ankyrin repeat
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G07840 AT5G61230 |
| fragaria_vesca | FvH4_5g24200 FvH4_6g43270 |
| malus_domestica | MD00G1078600.v1.1 MD06G1017600.v1.1 |
| prunus_persica | Prupe.5G018400_v2.0.a1 |
| pyrus_communis | pycom06g01430 pycom16g25570 |
| rosa_chinensis | RchiOBHm_Chr2g0159541 RchiOBHm_Chr7g0214011 |
| rosa_laevigata | RLG00000002764 RLG00000021164 |
| rosa_multiflora | Rmu_sc0004260.1_g000002 Rmu_sc0009579.1_g000008 Rmu_sc0012414.1_g000012 |
| rosa_roxburghii | Rroxscaffold_3G00245590 |
| rosa_rugosa | Rorug02G0476700 Rorug07G0145200 |
| rosa_samantha | Rh2AG543600 Rh2AG544000 Rh2BG556700 Rh2CG526900 Rh2DG565700 Rh7AG278700 Rh7BG272100 Rh7CG297600 Rh7DG284300 |
| rosa_wichuraiana | Rw2G044960 Rw7G023970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 246 |
| AciI | CCGC | 6 cut(s) | 109, 136, 222, 231, 312, 323 |
| AclWI | GGATC | 1 cut(s) | 42 |
| AcoI | YGGCCR | 2 cut(s) | 55, 232 |
| AcuI | CTGAAG | 2 cut(s) | 245, 464 |
| AcyI | GRCGYC | 1 cut(s) | 243 |
| AfaI | GTAC | 1 cut(s) | 156 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 27 |
| AjnI | CCWGG | 1 cut(s) | 147 |
| AluBI | AGCT | 2 cut(s) | 298, 510 |
| AluI | AGCT | 2 cut(s) | 298, 510 |
| Alw21I | GWGCWC | 1 cut(s) | 512 |
| Alw26I | GTCTC | 1 cut(s) | 452 |
| AlwI | GGATC | 1 cut(s) | 42 |
| Ama87I | CYCGRG | 1 cut(s) | 449 |
| AoxI | GGCC | 2 cut(s) | 55, 232 |
| ApeKI | GCWGC | 2 cut(s) | 295, 335 |
| AsuHPI | GGTGA | 4 cut(s) | 128, 142, 196, 206 |
| AvaI | CYCGRG | 1 cut(s) | 449 |
| BalI | TGGCCA | 1 cut(s) | 57 |
| BanII | GRGCYC | 1 cut(s) | 512 |
| Bbv12I | GWGCWC | 1 cut(s) | 512 |
| BbvI | GCAGC | 2 cut(s) | 307, 347 |
| BccI | CCATC | 1 cut(s) | 78 |
| BceAI | ACGGC | 1 cut(s) | 491 |
| BciT130I | CCWGG | 1 cut(s) | 149 |
| BclI | TGATCA | 1 cut(s) | 3 |
| BcoDI | GTCTC | 1 cut(s) | 452 |
| BfaI | CTAG | 1 cut(s) | 285 |
| BisI | GCNGC | 7 cut(s) | 109, 137, 222, 232, 296, 313, 336 |
| BlsI | GCNGC | 7 cut(s) | 110, 138, 223, 233, 297, 314, 337 |
| Bme1390I | CCNGG | 1 cut(s) | 149 |
| BmeT110I | CYCGRG | 1 cut(s) | 449 |
| BmiI | GGNNCC | 1 cut(s) | 64 |
| BmrFI | CCNGG | 1 cut(s) | 149 |
| BmsI | GCATC | 1 cut(s) | 271 |
| BsaHI | GRCGYC | 1 cut(s) | 243 |
| BsaI | GGTCTC | 1 cut(s) | 452 |
| BsaJI | CCNNGG | 3 cut(s) | 58, 148, 442 |
| BsaWI | WCCGGW | 1 cut(s) | 50 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 27 |
| Bse118I | RCCGGY | 1 cut(s) | 394 |
| Bse1I | ACTGG | 1 cut(s) | 162 |
| BseBI | CCWGG | 1 cut(s) | 149 |
| BseDI | CCNNGG | 3 cut(s) | 58, 148, 442 |
| BseGI | GGATG | 4 cut(s) | 79, 89, 166, 256 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 27 |
| BseNI | ACTGG | 1 cut(s) | 162 |
| BseRI | GAGGAG | 2 cut(s) | 361, 364 |
| BseXI | GCAGC | 2 cut(s) | 307, 347 |
| BseYI | CCCAGC | 1 cut(s) | 298 |
| BshFI | GGCC | 2 cut(s) | 57, 234 |
| BsiHKAI | GWGCWC | 1 cut(s) | 512 |
| BsiHKCI | CYCGRG | 1 cut(s) | 449 |
| BsiSI | CCGG | 2 cut(s) | 51, 395 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 27 |
| BsmAI | GTCTC | 1 cut(s) | 452 |
| BsnI | GGCC | 2 cut(s) | 57, 234 |
| Bso31I | GGTCTC | 1 cut(s) | 452 |
| BsoBI | CYCGRG | 1 cut(s) | 449 |
| Bsp1286I | GDGCHC | 1 cut(s) | 512 |
| Bsp143I | GATC | 3 cut(s) | 3, 47, 118 |
| Bsp19I | CCATGG | 1 cut(s) | 58 |
| BspACI | CCGC | 6 cut(s) | 109, 136, 222, 231, 312, 323 |
| BspANI | GGCC | 2 cut(s) | 57, 234 |
| BspLI | GGNNCC | 1 cut(s) | 64 |
| BspPI | GGATC | 1 cut(s) | 42 |
| BspTNI | GGTCTC | 1 cut(s) | 452 |
| BsrFI | RCCGGY | 1 cut(s) | 394 |
| BsrI | ACTGG | 1 cut(s) | 162 |
| BssAI | RCCGGY | 1 cut(s) | 394 |
| BssECI | CCNNGG | 3 cut(s) | 58, 148, 442 |
| BssMI | GATC | 3 cut(s) | 3, 47, 118 |
| BssNI | GRCGYC | 1 cut(s) | 243 |
| BssT1I | CCWWGG | 1 cut(s) | 58 |
| Bst2UI | CCWGG | 1 cut(s) | 149 |
| Bst6I | CTCTTC | 1 cut(s) | 216 |
| BstACI | GRCGYC | 1 cut(s) | 243 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 309 |
| BstC8I | GCNNGC | 2 cut(s) | 67, 310 |
| BstDEI | CTNAG | 1 cut(s) | 291 |
| BstDSI | CCRYGG | 1 cut(s) | 58 |
| BstEII | GGTNACC | 1 cut(s) | 202 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 25 |
| BstF5I | GGATG | 4 cut(s) | 79, 89, 166, 256 |
| BstKTI | GATC | 3 cut(s) | 6, 50, 121 |
| BstMAI | GTCTC | 1 cut(s) | 452 |
| BstMBI | GATC | 3 cut(s) | 3, 47, 118 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 309 |
| BstNI | CCWGG | 1 cut(s) | 149 |
| BstNSI | RCATGY | 2 cut(s) | 180, 406 |
| BstPI | GGTNACC | 1 cut(s) | 202 |
| BstSCI | CCNGG | 1 cut(s) | 147 |
| BstV1I | GCAGC | 2 cut(s) | 307, 347 |
| BstX2I | RGATCY | 1 cut(s) | 47 |
| BstYI | RGATCY | 1 cut(s) | 47 |
| BsuRI | GGCC | 2 cut(s) | 57, 234 |
| BtgI | CCRYGG | 1 cut(s) | 58 |
| BtsCI | GGATG | 4 cut(s) | 79, 89, 166, 256 |
| BtsI | GCAGTG | 3 cut(s) | 187, 310, 366 |
| BtsIMutI | CAGTG | 3 cut(s) | 187, 310, 366 |
| Cac8I | GCNNGC | 2 cut(s) | 67, 310 |
| Cfr10I | RCCGGY | 1 cut(s) | 394 |
| Csp6I | GTAC | 1 cut(s) | 155 |
| CviAII | CATG | 7 cut(s) | 59, 70, 177, 236, 247, 403, 469 |
| CviQI | GTAC | 1 cut(s) | 155 |
| DdeI | CTNAG | 1 cut(s) | 291 |
| DpnI | GATC | 3 cut(s) | 5, 49, 120 |
| DpnII | GATC | 3 cut(s) | 3, 47, 118 |
| EaeI | YGGCCR | 2 cut(s) | 55, 232 |
| Eam1104I | CTCTTC | 1 cut(s) | 216 |
| EarI | CTCTTC | 1 cut(s) | 216 |
| Ecl136II | GAGCTC | 1 cut(s) | 510 |
| Eco130I | CCWWGG | 1 cut(s) | 58 |
| Eco24I | GRGCYC | 1 cut(s) | 512 |
| Eco31I | GGTCTC | 1 cut(s) | 452 |
| Eco53kI | GAGCTC | 1 cut(s) | 510 |
| Eco57I | CTGAAG | 2 cut(s) | 245, 464 |
| Eco88I | CYCGRG | 1 cut(s) | 449 |
| Eco91I | GGTNACC | 1 cut(s) | 202 |
| EcoICRI | GAGCTC | 1 cut(s) | 510 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 25 |
| EcoO65I | GGTNACC | 1 cut(s) | 202 |
| EcoRII | CCWGG | 1 cut(s) | 147 |
| EcoT14I | CCWWGG | 1 cut(s) | 58 |
| EcoT38I | GRGCYC | 1 cut(s) | 512 |
| ErhI | CCWWGG | 1 cut(s) | 58 |
| FaeI | CATG | 7 cut(s) | 62, 73, 180, 239, 250, 406, 472 |
| FaiI | YATR | 8 cut(s) | 60, 71, 178, 237, 248, 278, 404, 470 |
| FatI | CATG | 7 cut(s) | 58, 69, 176, 235, 246, 402, 468 |
| FbaI | TGATCA | 1 cut(s) | 3 |
| Fnu4HI | GCNGC | 7 cut(s) | 109, 137, 222, 232, 296, 313, 336 |
| FokI | GGATG | 4 cut(s) | 86, 96, 173, 263 |
| FriOI | GRGCYC | 1 cut(s) | 512 |
| Fsp4HI | GCNGC | 7 cut(s) | 109, 137, 222, 232, 296, 313, 336 |
| FspBI | CTAG | 1 cut(s) | 285 |
| GluI | GCNGC | 7 cut(s) | 109, 137, 222, 232, 296, 313, 336 |
| GsaI | CCCAGC | 1 cut(s) | 302 |
| HaeIII | GGCC | 2 cut(s) | 57, 234 |
| HapII | CCGG | 2 cut(s) | 51, 395 |
| Hin1I | GRCGYC | 1 cut(s) | 243 |
| Hin1II | CATG | 7 cut(s) | 62, 73, 180, 239, 250, 406, 472 |
| HincII | GTYRAC | 2 cut(s) | 241, 400 |
| HindII | GTYRAC | 2 cut(s) | 241, 400 |
| HinfI | GANTC | 2 cut(s) | 88, 319 |
| HpaII | CCGG | 2 cut(s) | 51, 395 |
| HphI | GGTGA | 4 cut(s) | 128, 142, 196, 206 |
| Hpy166II | GTNNAC | 3 cut(s) | 155, 241, 400 |
| Hpy188III | TCNNGA | 2 cut(s) | 195, 449 |
| Hpy8I | GTNNAC | 3 cut(s) | 155, 241, 400 |
| HpyCH4IV | ACGT | 2 cut(s) | 243, 491 |
| HpyCH4V | TGCA | 3 cut(s) | 180, 335, 406 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 309 |
| HpyF3I | CTNAG | 1 cut(s) | 291 |
| HpySE526I | ACGT | 2 cut(s) | 243, 491 |
| Hsp92I | GRCGYC | 1 cut(s) | 243 |
| Hsp92II | CATG | 7 cut(s) | 62, 73, 180, 239, 250, 406, 472 |
| Ksp22I | TGATCA | 1 cut(s) | 3 |
| Kzo9I | GATC | 3 cut(s) | 3, 47, 118 |
| LmnI | GCTCC | 1 cut(s) | 62 |
| Lsp1109I | GCAGC | 2 cut(s) | 307, 347 |
| LweI | GCATC | 1 cut(s) | 271 |
| MaeI | CTAG | 1 cut(s) | 285 |
| MaeII | ACGT | 2 cut(s) | 243, 491 |
| MaeIII | GTNAC | 1 cut(s) | 202 |
| MalI | GATC | 3 cut(s) | 5, 49, 120 |
| MboI | GATC | 3 cut(s) | 3, 47, 118 |
| MboII | GAAGA | 1 cut(s) | 203 |
| MflI | RGATCY | 1 cut(s) | 47 |
| MhlI | GDGCHC | 1 cut(s) | 512 |
| MlsI | TGGCCA | 1 cut(s) | 57 |
| MluNI | TGGCCA | 1 cut(s) | 57 |
| MlyI | GAGTC | 2 cut(s) | 82, 313 |
| Mox20I | TGGCCA | 1 cut(s) | 57 |
| MscI | TGGCCA | 1 cut(s) | 57 |
| MseI | TTAA | 1 cut(s) | 420 |
| Msp20I | TGGCCA | 1 cut(s) | 57 |
| MspA1I | CMGCKG | 1 cut(s) | 298 |
| MspI | CCGG | 2 cut(s) | 51, 395 |
| MspR9I | CCNGG | 1 cut(s) | 149 |
| MvaI | CCWGG | 1 cut(s) | 149 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 309 |
| NcoI | CCATGG | 1 cut(s) | 58 |
| NdeII | GATC | 3 cut(s) | 3, 47, 118 |
| NlaIII | CATG | 7 cut(s) | 62, 73, 180, 239, 250, 406, 472 |
| NlaIV | GGNNCC | 1 cut(s) | 64 |
| NmuCI | GTSAC | 1 cut(s) | 202 |
| NspI | RCATGY | 2 cut(s) | 180, 406 |
| PaeR7I | CTCGAG | 1 cut(s) | 449 |
| PkrI | GCNGC | 7 cut(s) | 110, 138, 223, 233, 297, 314, 337 |
| PleI | GAGTC | 2 cut(s) | 82, 313 |
| PpsI | GAGTC | 2 cut(s) | 82, 313 |
| Psp124BI | GAGCTC | 1 cut(s) | 512 |
| Psp6I | CCWGG | 1 cut(s) | 147 |
| PspEI | GGTNACC | 1 cut(s) | 202 |
| PspFI | CCCAGC | 1 cut(s) | 298 |
| PspGI | CCWGG | 1 cut(s) | 147 |
| PspN4I | GGNNCC | 1 cut(s) | 64 |
| PsuI | RGATCY | 1 cut(s) | 47 |
| PvuII | CAGCTG | 1 cut(s) | 298 |
| RsaI | GTAC | 1 cut(s) | 156 |
| RsaNI | GTAC | 1 cut(s) | 155 |
| SacI | GAGCTC | 1 cut(s) | 512 |
| SaqAI | TTAA | 1 cut(s) | 420 |
| SatI | GCNGC | 7 cut(s) | 109, 137, 222, 232, 296, 313, 336 |
| Sau3AI | GATC | 3 cut(s) | 3, 47, 118 |
| SchI | GAGTC | 2 cut(s) | 82, 313 |
| ScrFI | CCNGG | 1 cut(s) | 149 |
| SduI | GDGCHC | 1 cut(s) | 512 |
| SetI | ASST | 9 cut(s) | 23, 132, 219, 246, 300, 368, 419, 494, 512 |
| SfaNI | GCATC | 1 cut(s) | 271 |
| Sfr274I | CTCGAG | 1 cut(s) | 449 |
| SlaI | CTCGAG | 1 cut(s) | 449 |
| SmlI | CTYRAG | 1 cut(s) | 449 |
| SmoI | CTYRAG | 1 cut(s) | 449 |
| SsiI | CCGC | 6 cut(s) | 109, 136, 222, 231, 312, 323 |
| SspMI | CTAG | 1 cut(s) | 285 |
| SstI | GAGCTC | 1 cut(s) | 512 |
| StyD4I | CCNGG | 1 cut(s) | 147 |
| StyI | CCWWGG | 1 cut(s) | 58 |
| TaiI | ACGT | 2 cut(s) | 246, 494 |
| TaqI | TCGA | 1 cut(s) | 450 |
| TaqII | GACCGA | 1 cut(s) | 434 |
| TatI | WGTACW | 1 cut(s) | 154 |
| TauI | GCSGC | 5 cut(s) | 111, 139, 224, 234, 315 |
| Tru1I | TTAA | 1 cut(s) | 420 |
| Tru9I | TTAA | 1 cut(s) | 420 |
| TscAI | CASTG | 3 cut(s) | 187, 310, 366 |
| TseFI | GTSAC | 1 cut(s) | 202 |
| TseI | GCWGC | 2 cut(s) | 295, 335 |
| Tsp45I | GTSAC | 1 cut(s) | 202 |
| TspDTI | ATGAA | 1 cut(s) | 485 |
| TspRI | CASTG | 3 cut(s) | 187, 310, 366 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 25 |
| XceI | RCATGY | 2 cut(s) | 180, 406 |
| XhoI | CTCGAG | 1 cut(s) | 449 |
| XspI | CTAG | 1 cut(s) | 285 |
| ZraI | GACGTC | 1 cut(s) | 244 |