AT5G61230

ankyrin repeat family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005106
Physical Location & Seq
Forward (+)
24627187 .. 24628968
1782 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G61230.1

Sequence Viewer

Length: 525 bp
ATGCTCCAAGAACCGTCGGCTGCATTCTCCCTCCGGCGTAACTCATTCAGACGCCGATCTCCCAGATCAAATGTCGATGACAGAGGCTGGAATCCGCTCCATATCAAAGCCAGAAAAGGCGATCTGAAATCTGTCAAGCAGCTTCTCGACCAAGGAATGGATGTGAATGCTCTAGCATGGGGACCCAAATCAAAAGGAGTGAGTGCACTTCACCTTGCAGCAGAGGGAGGTCACATTGAAGTCATGGATTTACTCCTAGAACGTGGGGCCAACATTGATGCTAAAACATGGGGCTCATGCGGGTGGACTCCTCTCCACGCTGCAGCCAAAGAGCGGAAGAGAGAAGCAGTGAAGTTTCTGGTGGAGAACGGCGCATTCTTGGCAGATGATATAACTGATACCAGGTTTAATCCGCCGGTGCATTACTGTCACGGCCTTGAATGGGCGTACGAGGAAATGAAGAAGCTTAACAGCGAGTCTTCTTCTTCATCTGGTGGAGACACATCTTCCAGTTCTGACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000278 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0001508 GO:0001932 GO:0001933 GO:0002028 GO:0003008 GO:0003254 GO:0003674 GO:0003824 GO:0004842 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005783 GO:0005794 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0006810 GO:0006888 GO:0006892 GO:0006893 GO:0006996 GO:0007009 GO:0007010 GO:0007016 GO:0007049 GO:0007154 GO:0007275 GO:0007399 GO:0007409 GO:0007528 GO:0008037 GO:0008092 GO:0008104 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009553 GO:0009566 GO:0009567 GO:0009628 GO:0009639 GO:0009642 GO:0009644 GO:0009653 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009962 GO:0009963 GO:0009986 GO:0009987 GO:0009988 GO:0010033 GO:0010035 GO:0010038 GO:0010218 GO:0010256 GO:0010313 GO:0010468 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0010647 GO:0010649 GO:0010650 GO:0010765 GO:0010959 GO:0010960 GO:0012505 GO:0014704 GO:0014731 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0016328 GO:0016528 GO:0016529 GO:0016567 GO:0016740 GO:0019220 GO:0019222 GO:0019226 GO:0019228 GO:0019538 GO:0019787 GO:0019899 GO:0019953 GO:0022008 GO:0022402 GO:0022407 GO:0022409 GO:0022412 GO:0022414 GO:0022607 GO:0022898 GO:0023052 GO:0030016 GO:0030017 GO:0030018 GO:0030030 GO:0030054 GO:0030154 GO:0030155 GO:0030182 GO:0030315 GO:0030424 GO:0030425 GO:0030507 GO:0030674 GO:0031175 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031537 GO:0031539 GO:0031540 GO:0031542 GO:0031594 GO:0031625 GO:0031674 GO:0032026 GO:0032268 GO:0032269 GO:0032386 GO:0032388 GO:0032409 GO:0032410 GO:0032411 GO:0032412 GO:0032413 GO:0032414 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032507 GO:0032879 GO:0032880 GO:0032989 GO:0032990 GO:0032991 GO:0033036 GO:0033157 GO:0033267 GO:0033268 GO:0034110 GO:0034112 GO:0034285 GO:0034613 GO:0034762 GO:0034763 GO:0034764 GO:0034765 GO:0034766 GO:0034767 GO:0035637 GO:0036211 GO:0036477 GO:0042221 GO:0042325 GO:0042326 GO:0042383 GO:0042391 GO:0042592 GO:0042886 GO:0042995 GO:0043001 GO:0043005 GO:0043034 GO:0043170 GO:0043194 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043266 GO:0043267 GO:0043269 GO:0043270 GO:0043271 GO:0043292 GO:0043412 GO:0044085 GO:0044091 GO:0044092 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044291 GO:0044304 GO:0044325 GO:0044389 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044456 GO:0044459 GO:0044463 GO:0044464 GO:0044703 GO:0045026 GO:0045184 GO:0045185 GO:0045202 GO:0045211 GO:0045296 GO:0045760 GO:0045785 GO:0045838 GO:0045936 GO:0046907 GO:0048193 GO:0048229 GO:0048468 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050808 GO:0050839 GO:0050877 GO:0050896 GO:0051049 GO:0051050 GO:0051051 GO:0051171 GO:0051172 GO:0051174 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051235 GO:0051246 GO:0051248 GO:0051301 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051716 GO:0055065 GO:0055080 GO:0060090 GO:0060255 GO:0060341 GO:0061024 GO:0061025 GO:0061564 GO:0061640 GO:0061936 GO:0061951 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070647 GO:0070727 GO:0070887 GO:0071241 GO:0071248 GO:0071286 GO:0071702 GO:0071704 GO:0071705 GO:0071709 GO:0071840 GO:0071944 GO:0072507 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0080090 GO:0080173 GO:0090087 GO:0090150 GO:0090313 GO:0090314 GO:0090316 GO:0097060 GO:0097447 GO:0097458 GO:0098590 GO:0098771 GO:0098794 GO:0098876 GO:0098900 GO:0098901 GO:0098902 GO:0099080 GO:0099081 GO:0099512 GO:0120025 GO:0120036 GO:0120038 GO:0120039 GO:0140096 GO:1900825 GO:1900827 GO:1901016 GO:1901017 GO:1901379 GO:1901380 GO:1901564 GO:1901700 GO:1902259 GO:1902260 GO:1902305 GO:1902307 GO:1902494 GO:1903047 GO:1903533 GO:1903817 GO:1903827 GO:1903829 GO:1904062 GO:1904063 GO:1904064 GO:1904181 GO:1904951 GO:1905475 GO:1905477 GO:1990234 GO:1990778 GO:2000649 GO:2000651 GO:2001257 GO:2001258 GO:2001259
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_3 Ank_4

Protein Analysis

174

Amino Acids

19.21

Weight (kDa)

7.83

Isoelectric Point (pI)

56.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 25 - 95 1.9e-13 Ankyrin repeats (3 copies)
Ank_KRIT1 PF24521 31 - 126 7.6e-07 KRIT1 ankyrin-repeats domain
Ank_4 PF13637 33 - 86 4.7e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 65 - 126 1.1e-13 Ankyrin repeats (3 copies)
Ank PF00023 66 - 96 2.8e-08 Ankyrin repeat
Ank_4 PF13637 70 - 121 6.5e-11 Ankyrin repeats (many copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 157
AccBSI CCGCTC 2 cut(s) 97, 334
AciI CCGC 4 cut(s) 95, 300, 334, 413
AcyI GRCGYC 1 cut(s) 52
AfaI GTAC 1 cut(s) 449
AfiI CCNNNNNNNGG 3 cut(s) 157, 333, 442
AgsI TTSAA 2 cut(s) 239, 440
AjnI CCWGG 1 cut(s) 401
AluBI AGCT 2 cut(s) 142, 466
AluI AGCT 2 cut(s) 142, 466
Alw21I GWGCWC 1 cut(s) 208
Alw26I GTCTC 1 cut(s) 492
Alw44I GTGCAC 1 cut(s) 204
AlwNI CAGNNNCTG 1 cut(s) 87
AoxI GGCC 2 cut(s) 267, 433
ApaLI GTGCAC 1 cut(s) 204
ApeKI GCWGC 5 cut(s) 20, 139, 218, 320, 323
AspLEI GCGC 1 cut(s) 374
AspS9I GGNCC 2 cut(s) 182, 267
AsuHPI GGTGA 1 cut(s) 203
AvaII GGWCC 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 208
BanII GRGCYC 1 cut(s) 296
BbsI GAAGAC 1 cut(s) 471
Bbv12I GWGCWC 1 cut(s) 208
BbvI GCAGC 5 cut(s) 7, 151, 230, 307, 335
BceAI ACGGC 2 cut(s) 385, 448
BciT130I CCWGG 1 cut(s) 403
BcoDI GTCTC 1 cut(s) 492
BfaI CTAG 2 cut(s) 173, 257
BfmI CTRYAG 1 cut(s) 321
BisI GCNGC 5 cut(s) 21, 140, 219, 321, 324
BlsI GCNGC 5 cut(s) 22, 141, 220, 322, 325
Bme1390I CCNGG 1 cut(s) 403
Bme18I GGWCC 1 cut(s) 182
BmgT120I GGNCC 2 cut(s) 182, 267
BmiI GGNNCC 3 cut(s) 183, 184, 268
BmrFI CCNGG 1 cut(s) 403
BmsI GCATC 1 cut(s) 268
BpiI GAAGAC 1 cut(s) 471
BsaHI GRCGYC 1 cut(s) 52
BsaJI CCNNGG 1 cut(s) 151
Bsc4I CCNNNNNNNGG 3 cut(s) 157, 333, 442
Bse118I RCCGGY 1 cut(s) 415
Bse1I ACTGG 1 cut(s) 510
BseBI CCWGG 1 cut(s) 403
BseDI CCNNGG 1 cut(s) 151
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 3 cut(s) 157, 333, 442
BseNI ACTGG 1 cut(s) 510
BseRI GAGGAG 1 cut(s) 300
BseSI GKGCMC 1 cut(s) 208
BseXI GCAGC 5 cut(s) 7, 151, 230, 307, 335
BshFI GGCC 2 cut(s) 269, 435
BsiHKAI GWGCWC 1 cut(s) 208
BsiSI CCGG 2 cut(s) 34, 416
BsiWI CGTACG 1 cut(s) 447
BslFI GGGAC 1 cut(s) 195
BslI CCNNNNNNNGG 3 cut(s) 157, 333, 442
BsmAI GTCTC 1 cut(s) 492
BsmFI GGGAC 1 cut(s) 195
BsmI GAATGC 3 cut(s) 23, 172, 374
BsnI GGCC 2 cut(s) 269, 435
Bsp1286I GDGCHC 2 cut(s) 208, 296
Bsp143I GATC 3 cut(s) 56, 65, 121
BspACI CCGC 4 cut(s) 95, 300, 334, 413
BspANI GGCC 2 cut(s) 269, 435
BspLI GGNNCC 3 cut(s) 183, 184, 268
BspMAI CTGCAG 1 cut(s) 325
BsrBI CCGCTC 2 cut(s) 97, 334
BsrFI RCCGGY 1 cut(s) 415
BsrI ACTGG 1 cut(s) 510
BssAI RCCGGY 1 cut(s) 415
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 3 cut(s) 56, 65, 121
BssNI GRCGYC 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 151
Bst2UI CCWGG 1 cut(s) 403
Bst4CI ACNGT 2 cut(s) 15, 428
Bst6I CTCTTC 1 cut(s) 332
BstACI GRCGYC 1 cut(s) 52
BstF5I GGATG 1 cut(s) 166
BstHHI GCGC 1 cut(s) 374
BstKTI GATC 3 cut(s) 59, 68, 124
BstMAI GTCTC 1 cut(s) 492
BstMBI GATC 3 cut(s) 56, 65, 121
BstMWI GCNNNNNNNGC 1 cut(s) 380
BstNI CCWGG 1 cut(s) 403
BstSCI CCNGG 1 cut(s) 401
BstSFI CTRYAG 1 cut(s) 321
BstSLI GKGCMC 1 cut(s) 208
BstV1I GCAGC 5 cut(s) 7, 151, 230, 307, 335
BstV2I GAAGAC 1 cut(s) 471
BsuRI GGCC 2 cut(s) 269, 435
BtsCI GGATG 1 cut(s) 166
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 1 cut(s) 354
CaiI CAGNNNCTG 1 cut(s) 87
CfoI GCGC 1 cut(s) 374
Cfr10I RCCGGY 1 cut(s) 415
Cfr13I GGNCC 2 cut(s) 182, 267
CseI GACGC 1 cut(s) 60
CsiI ACCWGGT 1 cut(s) 401
Csp6I GTAC 1 cut(s) 448
CviAII CATG 4 cut(s) 177, 244, 288, 297
CviJI RGCY 9 cut(s) 20, 87, 110, 142, 269, 294, 326, 435, 466
CviKI_1 RGCY 9 cut(s) 20, 87, 110, 142, 269, 294, 326, 435, 466
CviQI GTAC 1 cut(s) 448
DpnI GATC 3 cut(s) 58, 67, 123
DpnII GATC 3 cut(s) 56, 65, 121
Eam1104I CTCTTC 1 cut(s) 332
EarI CTCTTC 1 cut(s) 332
EciI GGCGGA 1 cut(s) 402
Eco130I CCWWGG 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 296
Eco47I GGWCC 1 cut(s) 182
EcoO109I RGGNCCY 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 401
EcoT14I CCWWGG 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 296
ErhI CCWWGG 1 cut(s) 151
FaeI CATG 4 cut(s) 180, 247, 291, 300
FaiI YATR 6 cut(s) 102, 178, 245, 289, 298, 392
FaqI GGGAC 1 cut(s) 195
FatI CATG 4 cut(s) 176, 243, 287, 296
FauI CCCGC 1 cut(s) 293
Fnu4HI GCNGC 5 cut(s) 21, 140, 219, 321, 324
FokI GGATG 1 cut(s) 173
FriOI GRGCYC 1 cut(s) 296
Fsp4HI GCNGC 5 cut(s) 21, 140, 219, 321, 324
FspBI CTAG 2 cut(s) 173, 257
GlaI GCGC 1 cut(s) 373
GluI GCNGC 5 cut(s) 21, 140, 219, 321, 324
HaeIII GGCC 2 cut(s) 269, 435
HapII CCGG 2 cut(s) 34, 416
HgaI GACGC 1 cut(s) 60
HhaI GCGC 1 cut(s) 374
Hin1I GRCGYC 1 cut(s) 52
Hin1II CATG 4 cut(s) 180, 247, 291, 300
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 3 cut(s) 91, 307, 476
HpaII CCGG 2 cut(s) 34, 416
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 2 cut(s) 206, 306
Hpy188I TCNGA 3 cut(s) 50, 126, 517
Hpy188III TCNNGA 1 cut(s) 146
Hpy8I GTNNAC 2 cut(s) 206, 306
Hpy99I CGWCG 1 cut(s) 19
HpyCH4III ACNGT 2 cut(s) 15, 428
HpyCH4IV ACGT 1 cut(s) 262
HpyCH4V TGCA 5 cut(s) 23, 206, 218, 323, 421
HpyF10VI GCNNNNNNNGC 1 cut(s) 380
HpySE526I ACGT 1 cut(s) 262
Hsp92I GRCGYC 1 cut(s) 52
Hsp92II CATG 4 cut(s) 180, 247, 291, 300
HspAI GCGC 1 cut(s) 372
KflI GGGWCCC 1 cut(s) 182
Kzo9I GATC 3 cut(s) 56, 65, 121
LmnI GCTCC 2 cut(s) 9, 102
LpnPI CCDG 9 cut(s) 47, 73, 76, 124, 344, 388, 415, 429, 477
Lsp1109I GCAGC 5 cut(s) 7, 151, 230, 307, 335
LweI GCATC 1 cut(s) 268
MabI ACCWGGT 1 cut(s) 401
MaeI CTAG 2 cut(s) 173, 257
MaeII ACGT 1 cut(s) 262
MaeIII GTNAC 3 cut(s) 38, 230, 428
MalI GATC 3 cut(s) 58, 67, 123
MbiI CCGCTC 2 cut(s) 97, 334
MboI GATC 3 cut(s) 56, 65, 121
MboII GAAGA 6 cut(s) 349, 471, 472, 474, 477, 498
MhlI GDGCHC 2 cut(s) 208, 296
MlyI GAGTC 2 cut(s) 301, 485
MnlI CCTC 6 cut(s) 41, 77, 217, 221, 321, 445
MseI TTAA 2 cut(s) 408, 468
MslI CAYNNNNRTG 1 cut(s) 301
MspI CCGG 2 cut(s) 34, 416
MspR9I CCNGG 1 cut(s) 403
Mva1269I GAATGC 3 cut(s) 23, 172, 374
MvaI CCWGG 1 cut(s) 403
MwoI GCNNNNNNNGC 1 cut(s) 380
NdeII GATC 3 cut(s) 56, 65, 121
NlaIII CATG 4 cut(s) 180, 247, 291, 300
NlaIV GGNNCC 3 cut(s) 183, 184, 268
NmuCI GTSAC 2 cut(s) 230, 428
PctI GAATGC 3 cut(s) 23, 172, 374
PfeI GAWTC 1 cut(s) 91
Pfl23II CGTACG 1 cut(s) 447
PflMI CCANNNNNTGG 1 cut(s) 157
PkrI GCNGC 5 cut(s) 22, 141, 220, 322, 325
PleI GAGTC 2 cut(s) 301, 484
PpsI GAGTC 2 cut(s) 301, 484
PpuMI RGGWCCY 1 cut(s) 182
Psp5II RGGWCCY 1 cut(s) 182
Psp6I CCWGG 1 cut(s) 401
PspGI CCWGG 1 cut(s) 401
PspLI CGTACG 1 cut(s) 447
PspN4I GGNNCC 3 cut(s) 183, 184, 268
PspPI GGNCC 2 cut(s) 182, 267
PspPPI RGGWCCY 1 cut(s) 182
PstI CTGCAG 1 cut(s) 325
PstNI CAGNNNCTG 1 cut(s) 87
RsaI GTAC 1 cut(s) 449
RsaNI GTAC 1 cut(s) 448
RseI CAYNNNNRTG 1 cut(s) 301
SaqAI TTAA 2 cut(s) 408, 468
SatI GCNGC 5 cut(s) 21, 140, 219, 321, 324
Sau3AI GATC 3 cut(s) 56, 65, 121
Sau96I GGNCC 2 cut(s) 182, 267
SchI GAGTC 2 cut(s) 301, 485
ScrFI CCNGG 1 cut(s) 403
SduI GDGCHC 2 cut(s) 208, 296
SetI ASST 6 cut(s) 144, 216, 232, 265, 407, 468
SexAI ACCWGGT 1 cut(s) 401
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 1 cut(s) 321
SgrAI CRCCGGYG 1 cut(s) 415
SinI GGWCC 1 cut(s) 182
SmiMI CAYNNNNRTG 1 cut(s) 301
SsiI CCGC 4 cut(s) 95, 300, 334, 413
SspMI CTAG 2 cut(s) 173, 257
StyD4I CCNGG 1 cut(s) 401
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 2 cut(s) 15, 428
TaiI ACGT 1 cut(s) 265
TaqI TCGA 2 cut(s) 75, 147
TfiI GAWTC 1 cut(s) 91
Tru1I TTAA 2 cut(s) 408, 468
Tru9I TTAA 2 cut(s) 408, 468
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 2 cut(s) 230, 428
TseI GCWGC 5 cut(s) 20, 139, 218, 320, 323
Tsp45I GTSAC 2 cut(s) 230, 428
TspDTI ATGAA 2 cut(s) 473, 477
TspRI CASTG 1 cut(s) 354
Van91I CCANNNNNTGG 1 cut(s) 157
VneI GTGCAC 1 cut(s) 204
VpaK11BI GGWCC 1 cut(s) 182
XspI CTAG 2 cut(s) 173, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.