RchiOBHm_Chr7g0214011

ankyrin repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0005106
Physical Location & Seq
Reverse (-)
31207219 .. 31210329
3111 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19152

Sequence Viewer

Length: 531 bp
ATGGGAACTATGCTGCAAGAGCAGGAGCGAGGATCGCTCAGGCGGAGCTTGTCGAGGAGGCGTTCGTTTCGGTCTGGGGCGGGTATGGATGATAGGGGATGGACTCTGCTGCATGTCGGTTCTCGCAAGGGTGATCTGAAACAGGTGAGGCGACTTCTTGACGAGGGAATGGATGTGAATGTAGCTGCTTGGGGTCCCAAATCTAAAGGGATTACCCCTCTTCACCTCGCTGCTGAGGGTGGCCATCTTGAGGTTATGGATGAGTTGCTTGAGCGTGGTGCTAACATTGATGCCAGAACCAAGGGTGCTTGCGGCTGGACTCCGCTTCACAATGCAGCCAAAGAGAGGAGGAGGGAAGCAGTCAAATTCTTAGTAGAGAATGGGGCATTCTTGCCAGATGACATGTATGATTGTAGGTTTAATCCTCCACTCCATTACTGCCCTGGTCTTGAGTGGGCTTATGAGGAGATGAAGCGTCTCCAGTTAGAAACATCATCATCAGGGGACAGCTCTTACAGCTCTGAGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000278 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0001508 GO:0001932 GO:0001933 GO:0002028 GO:0003008 GO:0003254 GO:0003674 GO:0003824 GO:0004842 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005783 GO:0005794 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0006810 GO:0006888 GO:0006892 GO:0006893 GO:0006996 GO:0007009 GO:0007010 GO:0007016 GO:0007049 GO:0007154 GO:0007275 GO:0007399 GO:0007409 GO:0007528 GO:0008037 GO:0008092 GO:0008104 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009553 GO:0009566 GO:0009567 GO:0009628 GO:0009639 GO:0009642 GO:0009644 GO:0009653 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009962 GO:0009963 GO:0009986 GO:0009987 GO:0009988 GO:0010033 GO:0010035 GO:0010038 GO:0010218 GO:0010256 GO:0010313 GO:0010468 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0010647 GO:0010649 GO:0010650 GO:0010765 GO:0010959 GO:0010960 GO:0012505 GO:0014704 GO:0014731 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0016328 GO:0016528 GO:0016529 GO:0016567 GO:0016740 GO:0019220 GO:0019222 GO:0019226 GO:0019228 GO:0019538 GO:0019787 GO:0019899 GO:0019953 GO:0022008 GO:0022402 GO:0022407 GO:0022409 GO:0022412 GO:0022414 GO:0022607 GO:0022898 GO:0023052 GO:0030016 GO:0030017 GO:0030018 GO:0030030 GO:0030054 GO:0030154 GO:0030155 GO:0030182 GO:0030315 GO:0030424 GO:0030425 GO:0030507 GO:0030674 GO:0031175 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031537 GO:0031539 GO:0031540 GO:0031542 GO:0031594 GO:0031625 GO:0031674 GO:0032026 GO:0032268 GO:0032269 GO:0032386 GO:0032388 GO:0032409 GO:0032410 GO:0032411 GO:0032412 GO:0032413 GO:0032414 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032507 GO:0032879 GO:0032880 GO:0032989 GO:0032990 GO:0032991 GO:0033036 GO:0033157 GO:0033267 GO:0033268 GO:0034110 GO:0034112 GO:0034285 GO:0034613 GO:0034762 GO:0034763 GO:0034764 GO:0034765 GO:0034766 GO:0034767 GO:0035637 GO:0036211 GO:0036477 GO:0042221 GO:0042325 GO:0042326 GO:0042383 GO:0042391 GO:0042592 GO:0042886 GO:0042995 GO:0043001 GO:0043005 GO:0043034 GO:0043170 GO:0043194 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043266 GO:0043267 GO:0043269 GO:0043270 GO:0043271 GO:0043292 GO:0043412 GO:0044085 GO:0044091 GO:0044092 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044291 GO:0044304 GO:0044325 GO:0044389 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044456 GO:0044459 GO:0044463 GO:0044464 GO:0044703 GO:0045026 GO:0045184 GO:0045185 GO:0045202 GO:0045211 GO:0045296 GO:0045760 GO:0045785 GO:0045838 GO:0045936 GO:0046907 GO:0048193 GO:0048229 GO:0048468 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050808 GO:0050839 GO:0050877 GO:0050896 GO:0051049 GO:0051050 GO:0051051 GO:0051171 GO:0051172 GO:0051174 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051235 GO:0051246 GO:0051248 GO:0051301 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051716 GO:0055065 GO:0055080 GO:0060090 GO:0060255 GO:0060341 GO:0061024 GO:0061025 GO:0061564 GO:0061640 GO:0061936 GO:0061951 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070647 GO:0070727 GO:0070887 GO:0071241 GO:0071248 GO:0071286 GO:0071702 GO:0071704 GO:0071705 GO:0071709 GO:0071840 GO:0071944 GO:0072507 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0080090 GO:0080173 GO:0090087 GO:0090150 GO:0090313 GO:0090314 GO:0090316 GO:0097060 GO:0097447 GO:0097458 GO:0098590 GO:0098771 GO:0098794 GO:0098876 GO:0098900 GO:0098901 GO:0098902 GO:0099080 GO:0099081 GO:0099512 GO:0120025 GO:0120036 GO:0120038 GO:0120039 GO:0140096 GO:1900825 GO:1900827 GO:1901016 GO:1901017 GO:1901379 GO:1901380 GO:1901564 GO:1901700 GO:1902259 GO:1902260 GO:1902305 GO:1902307 GO:1902494 GO:1903047 GO:1903533 GO:1903817 GO:1903827 GO:1903829 GO:1904062 GO:1904063 GO:1904064 GO:1904181 GO:1904951 GO:1905475 GO:1905477 GO:1990234 GO:1990778 GO:2000649 GO:2000651 GO:2001257 GO:2001258 GO:2001259
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_3 Ank_4

Protein Analysis

176

Amino Acids

19.77

Weight (kDa)

6.97

Isoelectric Point (pI)

63.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 29 - 99 1.5e-11 Ankyrin repeats (3 copies)
Ank_2 PF12796 69 - 129 7.3e-14 Ankyrin repeats (3 copies)
Ank PF00023 70 - 101 8.5e-10 Ankyrin repeat
Ank_3 PF13606 70 - 98 1.4e-06 Ankyrin repeat
Ank_4 PF13637 74 - 125 9e-12 Ankyrin repeats (many copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 43, 80, 312, 323
AclWI GGATC 1 cut(s) 40
AcoI YGGCCR 1 cut(s) 241
AcsI RAATTY 1 cut(s) 365
AfiI CCNNNNNNNGG 2 cut(s) 250, 345
AflIII ACRYGT 1 cut(s) 402
AjnI CCWGG 1 cut(s) 442
AluBI AGCT 5 cut(s) 48, 185, 510, 519, 528
AluI AGCT 5 cut(s) 48, 185, 510, 519, 528
Alw26I GTCTC 1 cut(s) 482
AlwI GGATC 1 cut(s) 40
AoxI GGCC 1 cut(s) 241
ApeKI GCWGC 5 cut(s) 13, 109, 185, 230, 335
ApoI RAATTY 1 cut(s) 365
AspS9I GGNCC 1 cut(s) 194
AsuHPI GGTGA 3 cut(s) 143, 157, 215
AvaII GGWCC 1 cut(s) 194
BalI TGGCCA 1 cut(s) 243
BbvCI CCTCAGC 1 cut(s) 234
BbvI GCAGC 4 cut(s) 96, 172, 217, 347
BccI CCATC 2 cut(s) 93, 252
BciT130I CCWGG 1 cut(s) 444
BcoDI GTCTC 1 cut(s) 482
BisI GCNGC 6 cut(s) 14, 110, 186, 231, 313, 336
BlsI GCNGC 6 cut(s) 15, 111, 187, 232, 314, 337
Bme1390I CCNGG 1 cut(s) 444
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 2 cut(s) 195, 196
BmrFI CCNGG 1 cut(s) 444
BmsI GCATC 1 cut(s) 280
BplI GAGNNNNNCTC 2 cut(s) 21, 53
BpmI CTGGAG 1 cut(s) 464
Bpu10I CCTNAGC 2 cut(s) 38, 234
BpuEI CTTGAG 3 cut(s) 269, 290, 470
BsaJI CCNNGG 2 cut(s) 300, 442
Bsc4I CCNNNNNNNGG 2 cut(s) 250, 345
Bse1I ACTGG 1 cut(s) 481
BseBI CCWGG 1 cut(s) 444
BseDI CCNNGG 2 cut(s) 300, 442
BseGI GGATG 4 cut(s) 94, 104, 178, 265
BseLI CCNNNNNNNGG 2 cut(s) 250, 345
BseMII CTCAG 3 cut(s) 52, 225, 513
BseNI ACTGG 1 cut(s) 481
BseRI GAGGAG 4 cut(s) 70, 361, 364, 479
BseXI GCAGC 4 cut(s) 96, 172, 217, 347
BshFI GGCC 1 cut(s) 243
BslFI GGGAC 2 cut(s) 180, 518
BslI CCNNNNNNNGG 2 cut(s) 250, 345
BsmAI GTCTC 1 cut(s) 482
BsmBI CGTCTC 1 cut(s) 482
BsmFI GGGAC 2 cut(s) 180, 518
BsmI GAATGC 1 cut(s) 386
BsnI GGCC 1 cut(s) 243
Bsp143I GATC 2 cut(s) 32, 133
BspACI CCGC 4 cut(s) 43, 80, 312, 323
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 3 cut(s) 51, 226, 514
BspLI GGNNCC 2 cut(s) 195, 196
BspPI GGATC 1 cut(s) 40
BsrI ACTGG 1 cut(s) 481
BssECI CCNNGG 2 cut(s) 300, 442
BssMI GATC 2 cut(s) 32, 133
BssT1I CCWWGG 1 cut(s) 300
Bst2UI CCWGG 1 cut(s) 444
Bst6I CTCTTC 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 310
BstDEI CTNAG 4 cut(s) 38, 234, 370, 522
BstF5I GGATG 4 cut(s) 94, 104, 178, 265
BstKTI GATC 2 cut(s) 35, 136
BstMAI GTCTC 1 cut(s) 482
BstMBI GATC 2 cut(s) 32, 133
BstMWI GCNNNNNNNGC 4 cut(s) 19, 34, 516, 525
BstNI CCWGG 1 cut(s) 444
BstNSI RCATGY 2 cut(s) 116, 406
BstSCI CCNGG 1 cut(s) 442
BstV1I GCAGC 4 cut(s) 96, 172, 217, 347
BsuRI GGCC 1 cut(s) 243
BtsCI GGATG 4 cut(s) 94, 104, 178, 265
Cac8I GCNNGC 1 cut(s) 310
Cfr13I GGNCC 1 cut(s) 194
CseI GACGC 1 cut(s) 464
CviAII CATG 2 cut(s) 113, 403
CviJI RGCY 9 cut(s) 48, 185, 243, 315, 338, 458, 510, 519, 528
CviKI_1 RGCY 9 cut(s) 48, 185, 243, 315, 338, 458, 510, 519, 528
DdeI CTNAG 4 cut(s) 38, 234, 370, 522
DpnI GATC 2 cut(s) 34, 135
DpnII GATC 2 cut(s) 32, 133
EaeI YGGCCR 1 cut(s) 241
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
EciI GGCGGA 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 194
EcoO109I RGGNCCY 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 300
Esp3I CGTCTC 1 cut(s) 482
FaeI CATG 2 cut(s) 116, 406
FaiI YATR 7 cut(s) 11, 86, 114, 257, 404, 408, 462
FaqI GGGAC 2 cut(s) 180, 518
FatI CATG 2 cut(s) 112, 402
FauI CCCGC 1 cut(s) 73
Fnu4HI GCNGC 6 cut(s) 14, 110, 186, 231, 313, 336
FokI GGATG 4 cut(s) 101, 111, 185, 272
Fsp4HI GCNGC 6 cut(s) 14, 110, 186, 231, 313, 336
GluI GCNGC 6 cut(s) 14, 110, 186, 231, 313, 336
GsuI CTGGAG 1 cut(s) 464
HaeIII GGCC 1 cut(s) 243
HgaI GACGC 1 cut(s) 464
Hin1II CATG 2 cut(s) 116, 406
HinfI GANTC 2 cut(s) 103, 319
HphI GGTGA 3 cut(s) 143, 157, 215
Hpy188I TCNGA 2 cut(s) 138, 523
Hpy188III TCNNGA 3 cut(s) 158, 248, 449
HpyCH4V TGCA 3 cut(s) 16, 112, 335
HpyF10VI GCNNNNNNNGC 4 cut(s) 19, 34, 516, 525
HpyF3I CTNAG 4 cut(s) 38, 234, 370, 522
Hsp92II CATG 2 cut(s) 116, 406
KflI GGGWCCC 1 cut(s) 194
Kzo9I GATC 2 cut(s) 32, 133
LmnI GCTCC 2 cut(s) 25, 45
Lsp1109I GCAGC 4 cut(s) 96, 172, 217, 347
LweI GCATC 1 cut(s) 280
MalI GATC 2 cut(s) 34, 135
MboI GATC 2 cut(s) 32, 133
MboII GAAGA 1 cut(s) 212
MlsI TGGCCA 1 cut(s) 243
MluCI AATT 1 cut(s) 365
MluNI TGGCCA 1 cut(s) 243
MlyI GAGTC 2 cut(s) 97, 313
Mox20I TGGCCA 1 cut(s) 243
MscI TGGCCA 1 cut(s) 243
MseI TTAA 1 cut(s) 420
Msp20I TGGCCA 1 cut(s) 243
MspR9I CCNGG 1 cut(s) 444
Mva1269I GAATGC 1 cut(s) 386
MvaI CCWGG 1 cut(s) 444
MwoI GCNNNNNNNGC 4 cut(s) 19, 34, 516, 525
NdeII GATC 2 cut(s) 32, 133
NlaIII CATG 2 cut(s) 116, 406
NlaIV GGNNCC 2 cut(s) 195, 196
NspI RCATGY 2 cut(s) 116, 406
PciI ACATGT 1 cut(s) 402
PctI GAATGC 1 cut(s) 386
PkrI GCNGC 6 cut(s) 15, 111, 187, 232, 314, 337
PleI GAGTC 2 cut(s) 97, 313
PpsI GAGTC 2 cut(s) 97, 313
PpuMI RGGWCCY 1 cut(s) 194
PscI ACATGT 1 cut(s) 402
Psp5II RGGWCCY 1 cut(s) 194
Psp6I CCWGG 1 cut(s) 442
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 2 cut(s) 195, 196
PspPI GGNCC 1 cut(s) 194
PspPPI RGGWCCY 1 cut(s) 194
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 6 cut(s) 14, 110, 186, 231, 313, 336
Sau3AI GATC 2 cut(s) 32, 133
Sau96I GGNCC 1 cut(s) 194
SchI GAGTC 2 cut(s) 97, 313
ScrFI CCNGG 1 cut(s) 444
SetI ASST 9 cut(s) 50, 147, 187, 228, 255, 419, 512, 521, 530
SfaNI GCATC 1 cut(s) 280
SinI GGWCC 1 cut(s) 194
SmlI CTYRAG 3 cut(s) 248, 269, 449
SmoI CTYRAG 3 cut(s) 248, 269, 449
Sse9I AATT 1 cut(s) 365
SsiI CCGC 4 cut(s) 43, 80, 312, 323
StyD4I CCNGG 1 cut(s) 442
StyI CCWWGG 1 cut(s) 300
TaqI TCGA 1 cut(s) 53
TaqII GACCGA 1 cut(s) 60
TasI AATT 1 cut(s) 365
TauI GCSGC 1 cut(s) 315
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TseI GCWGC 5 cut(s) 13, 109, 185, 230, 335
TspDTI ATGAA 1 cut(s) 485
VpaK11BI GGWCC 1 cut(s) 194
XapI RAATTY 1 cut(s) 365
XceI RCATGY 2 cut(s) 116, 406
XcmI CCANNNNNNNNNTGG 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.