MD00G1078600.v1.1

ankyrin repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0005106
Physical Location & Seq
Forward (+)
15863992 .. 15866692
2701 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1078600.v1.1.491

Sequence Viewer

Length: 504 bp
ATGGGCACGCTCAGGCGGAGCTTGTCGCGAAGGCGGTCGTTTAGGTCCAGTGTGGACATGGATGATAGAGGATGGACTCTGCTTCATATTGGTTGTCGAAAGGGCGACCTGAAACAGGTGAGGCGGCTTCTTGACGAGGGAATGGATGTGAATGCTGCTGCTTGGGGTCGCAAATCGAAAGGGGTTACCCCTCTCCACCTAGCTGCTGAGGGTGGTCATTTAGATGTTATGGATGAATTACTTGAGCGTGGAGCTAACATTGATGCCAGAACTAAGGGTGCTTGTGGCTGGACTCCGCTTCACAGTGCAGCCAAAGAGAGGAGGAGGGAAGCAGTGAAATTTCTGGTAGAGAATGGAGCGTTCTTGCCAGATGACATTTATGATTGTCGGTTTAACCCTCCACTCCATTACTGCCCTGGGCTTGAGTGGGCTTACGAGGAGATGAAGCGTCTTCAGCTAGAAAGTGCATCATCGGGGGAGAGCTCTTGCAGCTCTGAAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000278 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0001508 GO:0001932 GO:0001933 GO:0002028 GO:0003008 GO:0003254 GO:0003674 GO:0003824 GO:0004842 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005783 GO:0005794 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0006810 GO:0006888 GO:0006892 GO:0006893 GO:0006996 GO:0007009 GO:0007010 GO:0007016 GO:0007049 GO:0007154 GO:0007275 GO:0007399 GO:0007409 GO:0007528 GO:0008037 GO:0008092 GO:0008104 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009553 GO:0009566 GO:0009567 GO:0009628 GO:0009639 GO:0009642 GO:0009644 GO:0009653 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009962 GO:0009963 GO:0009986 GO:0009987 GO:0009988 GO:0010033 GO:0010035 GO:0010038 GO:0010218 GO:0010256 GO:0010313 GO:0010468 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0010647 GO:0010649 GO:0010650 GO:0010765 GO:0010959 GO:0010960 GO:0012505 GO:0014704 GO:0014731 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0016328 GO:0016528 GO:0016529 GO:0016567 GO:0016740 GO:0019220 GO:0019222 GO:0019226 GO:0019228 GO:0019538 GO:0019787 GO:0019899 GO:0019953 GO:0022008 GO:0022402 GO:0022407 GO:0022409 GO:0022412 GO:0022414 GO:0022607 GO:0022898 GO:0023052 GO:0030016 GO:0030017 GO:0030018 GO:0030030 GO:0030054 GO:0030154 GO:0030155 GO:0030182 GO:0030315 GO:0030424 GO:0030425 GO:0030507 GO:0030674 GO:0031175 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031537 GO:0031539 GO:0031540 GO:0031542 GO:0031594 GO:0031625 GO:0031674 GO:0032026 GO:0032268 GO:0032269 GO:0032386 GO:0032388 GO:0032409 GO:0032410 GO:0032411 GO:0032412 GO:0032413 GO:0032414 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032507 GO:0032879 GO:0032880 GO:0032989 GO:0032990 GO:0032991 GO:0033036 GO:0033157 GO:0033267 GO:0033268 GO:0034110 GO:0034112 GO:0034285 GO:0034613 GO:0034762 GO:0034763 GO:0034764 GO:0034765 GO:0034766 GO:0034767 GO:0035637 GO:0036211 GO:0036477 GO:0042221 GO:0042325 GO:0042326 GO:0042383 GO:0042391 GO:0042592 GO:0042886 GO:0042995 GO:0043001 GO:0043005 GO:0043034 GO:0043170 GO:0043194 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043266 GO:0043267 GO:0043269 GO:0043270 GO:0043271 GO:0043292 GO:0043412 GO:0044085 GO:0044091 GO:0044092 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044291 GO:0044304 GO:0044325 GO:0044389 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044456 GO:0044459 GO:0044463 GO:0044464 GO:0044703 GO:0045026 GO:0045184 GO:0045185 GO:0045202 GO:0045211 GO:0045296 GO:0045760 GO:0045785 GO:0045838 GO:0045936 GO:0046907 GO:0048193 GO:0048229 GO:0048468 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050808 GO:0050839 GO:0050877 GO:0050896 GO:0051049 GO:0051050 GO:0051051 GO:0051171 GO:0051172 GO:0051174 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051235 GO:0051246 GO:0051248 GO:0051301 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051716 GO:0055065 GO:0055080 GO:0060090 GO:0060255 GO:0060341 GO:0061024 GO:0061025 GO:0061564 GO:0061640 GO:0061936 GO:0061951 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070647 GO:0070727 GO:0070887 GO:0071241 GO:0071248 GO:0071286 GO:0071702 GO:0071704 GO:0071705 GO:0071709 GO:0071840 GO:0071944 GO:0072507 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0080090 GO:0080173 GO:0090087 GO:0090150 GO:0090313 GO:0090314 GO:0090316 GO:0097060 GO:0097447 GO:0097458 GO:0098590 GO:0098771 GO:0098794 GO:0098876 GO:0098900 GO:0098901 GO:0098902 GO:0099080 GO:0099081 GO:0099512 GO:0120025 GO:0120036 GO:0120038 GO:0120039 GO:0140096 GO:1900825 GO:1900827 GO:1901016 GO:1901017 GO:1901379 GO:1901380 GO:1901564 GO:1901700 GO:1902259 GO:1902260 GO:1902305 GO:1902307 GO:1902494 GO:1903047 GO:1903533 GO:1903817 GO:1903827 GO:1903829 GO:1904062 GO:1904063 GO:1904064 GO:1904181 GO:1904951 GO:1905475 GO:1905477 GO:1990234 GO:1990778 GO:2000649 GO:2000651 GO:2001257 GO:2001258 GO:2001259
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_3 Ank_4

Protein Analysis

168

Amino Acids

18.71

Weight (kDa)

7.68

Isoelectric Point (pI)

61.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 19 - 90 3e-13 Ankyrin repeats (3 copies)
Ank_4 PF13637 28 - 76 6.9e-06 Ankyrin repeats (many copies)
Ank_2 PF12796 60 - 120 3.6e-14 Ankyrin repeats (3 copies)
Ank_5 PF13857 60 - 92 9.3e-06 Ankyrin repeats (many copies)
Ank PF00023 61 - 92 1.2e-09 Ankyrin repeat
Ank_3 PF13606 61 - 89 2.6e-06 Ankyrin repeat
Ank_4 PF13637 65 - 116 1.1e-11 Ankyrin repeats (many copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 28
AciI CCGC 4 cut(s) 16, 34, 124, 296
AcsI RAATTY 1 cut(s) 338
AcuI CTGAAG 1 cut(s) 437
AfiI CCNNNNNNNGG 2 cut(s) 115, 318
AjnI CCWGG 1 cut(s) 415
AluBI AGCT 6 cut(s) 21, 203, 254, 457, 483, 492
AluI AGCT 6 cut(s) 21, 203, 254, 457, 483, 492
Alw21I GWGCWC 1 cut(s) 485
ApeKI GCWGC 5 cut(s) 155, 158, 203, 308, 489
ApoI RAATTY 1 cut(s) 338
AspS9I GGNCC 1 cut(s) 45
AsuHPI GGTGA 1 cut(s) 130
AvaII GGWCC 1 cut(s) 45
BaeGI GKGCMC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 485
BbsI GAAGAC 1 cut(s) 443
Bbv12I GWGCWC 1 cut(s) 485
BbvCI CCTCAGC 1 cut(s) 207
BbvI GCAGC 4 cut(s) 142, 145, 190, 320
BccI CCATC 1 cut(s) 66
BciT130I CCWGG 1 cut(s) 417
BfaI CTAG 2 cut(s) 200, 458
BisI GCNGC 6 cut(s) 125, 156, 159, 204, 309, 490
BlsI GCNGC 6 cut(s) 126, 157, 160, 205, 310, 491
Bme1390I CCNGG 1 cut(s) 417
Bme18I GGWCC 1 cut(s) 45
BmgT120I GGNCC 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 417
BmsI GCATC 2 cut(s) 253, 476
BpiI GAAGAC 1 cut(s) 443
Bpu10I CCTNAGC 2 cut(s) 11, 207
BpuEI CTTGAG 2 cut(s) 263, 443
BsaJI CCNNGG 2 cut(s) 415, 416
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 318
Bse1I ACTGG 1 cut(s) 48
BseBI CCWGG 1 cut(s) 417
BseDI CCNNGG 2 cut(s) 415, 416
BseGI GGATG 4 cut(s) 67, 77, 151, 238
BseLI CCNNNNNNNGG 2 cut(s) 115, 318
BseMII CTCAG 2 cut(s) 25, 198
BseNI ACTGG 1 cut(s) 48
BseRI GAGGAG 3 cut(s) 334, 337, 452
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 4 cut(s) 142, 145, 190, 320
BsgI GTGCAG 1 cut(s) 327
Bsh1236I CGCG 1 cut(s) 28
Bsh1285I CGRYCG 1 cut(s) 38
BsiEI CGRYCG 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 485
BslI CCNNNNNNNGG 2 cut(s) 115, 318
BsmI GAATGC 1 cut(s) 157
Bsp1286I GDGCHC 2 cut(s) 8, 485
Bsp68I TCGCGA 1 cut(s) 28
BspACI CCGC 4 cut(s) 16, 34, 124, 296
BspCNI CTCAG 2 cut(s) 24, 199
BspFNI CGCG 1 cut(s) 28
BsrI ACTGG 1 cut(s) 48
BssECI CCNNGG 2 cut(s) 415, 416
Bst2UI CCWGG 1 cut(s) 417
Bst4CI ACNGT 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 8
BstDEI CTNAG 3 cut(s) 11, 207, 273
BstEII GGTNACC 1 cut(s) 184
BstENI CCTNNNNNAGG 1 cut(s) 113
BstF5I GGATG 4 cut(s) 67, 77, 151, 238
BstFNI CGCG 1 cut(s) 28
BstMCI CGRYCG 1 cut(s) 38
BstMWI GCNNNNNNNGC 3 cut(s) 454, 489, 498
BstNI CCWGG 1 cut(s) 417
BstPI GGTNACC 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 415
BstSLI GKGCMC 1 cut(s) 8
BstUI CGCG 1 cut(s) 28
BstV1I GCAGC 4 cut(s) 142, 145, 190, 320
BstV2I GAAGAC 1 cut(s) 443
BtsCI GGATG 4 cut(s) 67, 77, 151, 238
BtsI GCAGTG 1 cut(s) 339
BtsIMutI CAGTG 3 cut(s) 55, 310, 339
BtuMI TCGCGA 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 45
CseI GACGC 1 cut(s) 437
CviAII CATG 1 cut(s) 58
DdeI CTNAG 3 cut(s) 11, 207, 273
EciI GGCGGA 1 cut(s) 31
Ecl136II GAGCTC 1 cut(s) 483
Eco24I GRGCYC 1 cut(s) 485
Eco47I GGWCC 1 cut(s) 45
Eco53kI GAGCTC 1 cut(s) 483
Eco57I CTGAAG 1 cut(s) 437
Eco91I GGTNACC 1 cut(s) 184
EcoICRI GAGCTC 1 cut(s) 483
EcoNI CCTNNNNNAGG 1 cut(s) 113
EcoO65I GGTNACC 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 415
EcoT38I GRGCYC 1 cut(s) 485
FaeI CATG 1 cut(s) 61
FaiI YATR 4 cut(s) 59, 87, 230, 381
FatI CATG 1 cut(s) 57
Fnu4HI GCNGC 6 cut(s) 125, 156, 159, 204, 309, 490
FokI GGATG 4 cut(s) 74, 84, 158, 245
FriOI GRGCYC 1 cut(s) 485
Fsp4HI GCNGC 6 cut(s) 125, 156, 159, 204, 309, 490
FspBI CTAG 2 cut(s) 200, 458
GluI GCNGC 6 cut(s) 125, 156, 159, 204, 309, 490
HgaI GACGC 1 cut(s) 437
Hin1II CATG 1 cut(s) 61
HinfI GANTC 2 cut(s) 76, 292
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 1 cut(s) 496
Hpy188III TCNNGA 2 cut(s) 27, 131
Hpy8I GTNNAC 1 cut(s) 55
HpyAV CCTTC 2 cut(s) 24, 491
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4V TGCA 3 cut(s) 308, 467, 489
HpyF10VI GCNNNNNNNGC 3 cut(s) 454, 489, 498
HpyF3I CTNAG 3 cut(s) 11, 207, 273
Hsp92II CATG 1 cut(s) 61
LmnI GCTCC 3 cut(s) 18, 251, 356
LpnPI CCDG 9 cut(s) 61, 101, 122, 274, 280, 329, 381, 402, 429
Lsp1109I GCAGC 4 cut(s) 142, 145, 190, 320
LweI GCATC 2 cut(s) 253, 476
MaeI CTAG 2 cut(s) 200, 458
MaeIII GTNAC 1 cut(s) 184
MboII GAAGA 1 cut(s) 443
MhlI GDGCHC 2 cut(s) 8, 485
MluCI AATT 2 cut(s) 236, 338
MlyI GAGTC 2 cut(s) 70, 286
MseI TTAA 1 cut(s) 393
MslI CAYNNNNRTG 1 cut(s) 222
MspR9I CCNGG 1 cut(s) 417
Mva1269I GAATGC 1 cut(s) 157
MvaI CCWGG 1 cut(s) 417
MvnI CGCG 1 cut(s) 28
MwoI GCNNNNNNNGC 3 cut(s) 454, 489, 498
NlaIII CATG 1 cut(s) 61
NruI TCGCGA 1 cut(s) 28
PasI CCCWGGG 1 cut(s) 416
PctI GAATGC 1 cut(s) 157
PkrI GCNGC 6 cut(s) 126, 157, 160, 205, 310, 491
PleI GAGTC 2 cut(s) 70, 286
PpsI GAGTC 2 cut(s) 70, 286
Psp124BI GAGCTC 1 cut(s) 485
Psp6I CCWGG 1 cut(s) 415
PspEI GGTNACC 1 cut(s) 184
PspGI CCWGG 1 cut(s) 415
PspPI GGNCC 1 cut(s) 45
RruI TCGCGA 1 cut(s) 28
RseI CAYNNNNRTG 1 cut(s) 222
SacI GAGCTC 1 cut(s) 485
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 6 cut(s) 125, 156, 159, 204, 309, 490
Sau96I GGNCC 1 cut(s) 45
SchI GAGTC 2 cut(s) 70, 286
ScrFI CCNGG 1 cut(s) 417
SduI GDGCHC 2 cut(s) 8, 485
SfaNI GCATC 2 cut(s) 253, 476
SinI GGWCC 1 cut(s) 45
SmiMI CAYNNNNRTG 1 cut(s) 222
SmlI CTYRAG 2 cut(s) 242, 422
SmoI CTYRAG 2 cut(s) 242, 422
Sse9I AATT 2 cut(s) 236, 338
SsiI CCGC 4 cut(s) 16, 34, 124, 296
SspMI CTAG 2 cut(s) 200, 458
SstI GAGCTC 1 cut(s) 485
StyD4I CCNGG 1 cut(s) 415
TaaI ACNGT 1 cut(s) 305
TaqI TCGA 2 cut(s) 97, 176
TasI AATT 2 cut(s) 236, 338
TauI GCSGC 1 cut(s) 127
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 3 cut(s) 55, 310, 339
TseI GCWGC 5 cut(s) 155, 158, 203, 308, 489
TspDTI ATGAA 3 cut(s) 74, 249, 458
TspRI CASTG 3 cut(s) 55, 310, 339
VpaK11BI GGWCC 1 cut(s) 45
XagI CCTNNNNNAGG 1 cut(s) 113
XapI RAATTY 1 cut(s) 338
XcmI CCANNNNNNNNNTGG 2 cut(s) 55, 413
XspI CTAG 2 cut(s) 200, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.