Rmu_sc0004260.1_g000002

ankyrin repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004260.1
OG0005106
Physical Location & Seq
Reverse (-)
4260 .. 4799
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004260.1_g000002.1.cds

Sequence Viewer

Length: 540 bp
atgatcagagctgggaggattacctcgtcaaggaggcgttcgtgtattaggtccggtggccatggagccagcatggatgatactgataggggatggactctacttcacgttggttgccgcaagggcgatctcaaagaggtgaagcggcttctcgaccagggtgtactggatgtgaatatggctacatgcggtggtcaaaaatcaagaggggtcacccctcttcacctcgccgcagagggcggccatgttgacgtcatggatgagttgcttcagcgtggggctaacatagatgccagaactaagcagctgggcggtgcttgcggctggactccgcttcacaatgcggcgaaagagaggaggagggaggcaatgaagtttctggtggagaatggggcgttcttgccggttgacatgcatgattgtaggttcaaccctccactccattactgcctcggtctcgagtgggcttacgaggacattaaacggcttcagcaacaaacctcatcttcaggggagagctcttgcggatccgaaacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000278 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0001508 GO:0001932 GO:0001933 GO:0002028 GO:0003008 GO:0003254 GO:0003674 GO:0003824 GO:0004842 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005783 GO:0005794 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0006810 GO:0006888 GO:0006892 GO:0006893 GO:0006996 GO:0007009 GO:0007010 GO:0007016 GO:0007049 GO:0007154 GO:0007275 GO:0007399 GO:0007409 GO:0007528 GO:0008037 GO:0008092 GO:0008104 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009553 GO:0009566 GO:0009567 GO:0009628 GO:0009639 GO:0009642 GO:0009644 GO:0009653 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009962 GO:0009963 GO:0009986 GO:0009987 GO:0009988 GO:0010033 GO:0010035 GO:0010038 GO:0010218 GO:0010256 GO:0010313 GO:0010468 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0010647 GO:0010649 GO:0010650 GO:0010765 GO:0010959 GO:0010960 GO:0012505 GO:0014704 GO:0014731 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0016328 GO:0016528 GO:0016529 GO:0016567 GO:0016740 GO:0019220 GO:0019222 GO:0019226 GO:0019228 GO:0019538 GO:0019787 GO:0019899 GO:0019953 GO:0022008 GO:0022402 GO:0022407 GO:0022409 GO:0022412 GO:0022414 GO:0022607 GO:0022898 GO:0023052 GO:0030016 GO:0030017 GO:0030018 GO:0030030 GO:0030054 GO:0030154 GO:0030155 GO:0030182 GO:0030315 GO:0030424 GO:0030425 GO:0030507 GO:0030674 GO:0031175 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031537 GO:0031539 GO:0031540 GO:0031542 GO:0031594 GO:0031625 GO:0031674 GO:0032026 GO:0032268 GO:0032269 GO:0032386 GO:0032388 GO:0032409 GO:0032410 GO:0032411 GO:0032412 GO:0032413 GO:0032414 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032507 GO:0032879 GO:0032880 GO:0032989 GO:0032990 GO:0032991 GO:0033036 GO:0033157 GO:0033267 GO:0033268 GO:0034110 GO:0034112 GO:0034285 GO:0034613 GO:0034762 GO:0034763 GO:0034764 GO:0034765 GO:0034766 GO:0034767 GO:0035637 GO:0036211 GO:0036477 GO:0042221 GO:0042325 GO:0042326 GO:0042383 GO:0042391 GO:0042592 GO:0042886 GO:0042995 GO:0043001 GO:0043005 GO:0043034 GO:0043170 GO:0043194 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043266 GO:0043267 GO:0043269 GO:0043270 GO:0043271 GO:0043292 GO:0043412 GO:0044085 GO:0044091 GO:0044092 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044291 GO:0044304 GO:0044325 GO:0044389 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044456 GO:0044459 GO:0044463 GO:0044464 GO:0044703 GO:0045026 GO:0045184 GO:0045185 GO:0045202 GO:0045211 GO:0045296 GO:0045760 GO:0045785 GO:0045838 GO:0045936 GO:0046907 GO:0048193 GO:0048229 GO:0048468 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050808 GO:0050839 GO:0050877 GO:0050896 GO:0051049 GO:0051050 GO:0051051 GO:0051171 GO:0051172 GO:0051174 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051235 GO:0051246 GO:0051248 GO:0051301 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051716 GO:0055065 GO:0055080 GO:0060090 GO:0060255 GO:0060341 GO:0061024 GO:0061025 GO:0061564 GO:0061640 GO:0061936 GO:0061951 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070647 GO:0070727 GO:0070887 GO:0071241 GO:0071248 GO:0071286 GO:0071702 GO:0071704 GO:0071705 GO:0071709 GO:0071840 GO:0071944 GO:0072507 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0080090 GO:0080173 GO:0090087 GO:0090150 GO:0090313 GO:0090314 GO:0090316 GO:0097060 GO:0097447 GO:0097458 GO:0098590 GO:0098771 GO:0098794 GO:0098876 GO:0098900 GO:0098901 GO:0098902 GO:0099080 GO:0099081 GO:0099512 GO:0120025 GO:0120036 GO:0120038 GO:0120039 GO:0140096 GO:1900825 GO:1900827 GO:1901016 GO:1901017 GO:1901379 GO:1901380 GO:1901564 GO:1901700 GO:1902259 GO:1902260 GO:1902305 GO:1902307 GO:1902494 GO:1903047 GO:1903533 GO:1903817 GO:1903827 GO:1903829 GO:1904062 GO:1904063 GO:1904064 GO:1904181 GO:1904951 GO:1905475 GO:1905477 GO:1990234 GO:1990778 GO:2000649 GO:2000651 GO:2001257 GO:2001258 GO:2001259
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_3 Ank_4

Protein Analysis

179

Amino Acids

19.69

Weight (kDa)

8.52

Isoelectric Point (pI)

58.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 255
AclWI GGATC 2 cut(s) 522, 535
AcoI YGGCCR 2 cut(s) 58, 241
AcuI CTGAAG 3 cut(s) 254, 473, 492
AcyI GRCGYC 1 cut(s) 252
AfaI GTAC 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 30
AgsI TTSAA 1 cut(s) 430
AjnI CCWGG 1 cut(s) 156
AluBI AGCT 3 cut(s) 11, 307, 519
AluI AGCT 3 cut(s) 11, 307, 519
Alw21I GWGCWC 1 cut(s) 521
Alw26I GTCTC 1 cut(s) 461
AlwI GGATC 2 cut(s) 522, 535
Ama87I CYCGRG 1 cut(s) 458
AoxI GGCC 2 cut(s) 58, 241
ApeKI GCWGC 1 cut(s) 304
AspS9I GGNCC 1 cut(s) 51
AsuHPI GGTGA 3 cut(s) 151, 205, 215
AvaI CYCGRG 1 cut(s) 458
AvaII GGWCC 1 cut(s) 51
BalI TGGCCA 1 cut(s) 60
BamHI GGATCC 1 cut(s) 527
BanII GRGCYC 1 cut(s) 521
Bbv12I GWGCWC 1 cut(s) 521
BbvI GCAGC 1 cut(s) 316
BccI CCATC 1 cut(s) 87
BceAI ACGGC 1 cut(s) 500
BciT130I CCWGG 1 cut(s) 158
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 461
BglI GCCNNNNNGGC 1 cut(s) 123
BisI GCNGC 7 cut(s) 118, 146, 231, 241, 305, 322, 345
BlsI GCNGC 7 cut(s) 119, 147, 232, 242, 306, 323, 346
Bme1390I CCNGG 1 cut(s) 158
Bme18I GGWCC 1 cut(s) 51
BmeT110I CYCGRG 1 cut(s) 458
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 2 cut(s) 67, 529
BmrFI CCNGG 1 cut(s) 158
BmsI GCATC 1 cut(s) 280
BsaHI GRCGYC 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 461
BsaJI CCNNGG 3 cut(s) 61, 157, 451
BsaWI WCCGGW 1 cut(s) 53
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse118I RCCGGY 1 cut(s) 403
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 375
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 3 cut(s) 61, 157, 451
BseGI GGATG 4 cut(s) 82, 98, 175, 265
BseLI CCNNNNNNNGG 1 cut(s) 30
BseMI GCAATG 1 cut(s) 375
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 2 cut(s) 370, 373
BseXI GCAGC 1 cut(s) 316
BseYI CCCAGC 2 cut(s) 11, 307
BshFI GGCC 2 cut(s) 60, 243
BsiHKAI GWGCWC 1 cut(s) 521
BsiHKCI CYCGRG 1 cut(s) 458
BsiSI CCGG 2 cut(s) 54, 404
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 461
BsnI GGCC 2 cut(s) 60, 243
Bso31I GGTCTC 1 cut(s) 461
BsoBI CYCGRG 1 cut(s) 458
Bsp1286I GDGCHC 1 cut(s) 521
Bsp143I GATC 3 cut(s) 3, 127, 527
Bsp19I CCATGG 1 cut(s) 61
BspANI GGCC 2 cut(s) 60, 243
BspLI GGNNCC 2 cut(s) 67, 529
BspPI GGATC 2 cut(s) 522, 535
BspTNI GGTCTC 1 cut(s) 461
BsrDI GCAATG 1 cut(s) 375
BsrFI RCCGGY 1 cut(s) 403
BsrI ACTGG 1 cut(s) 171
BssAI RCCGGY 1 cut(s) 403
BssECI CCNNGG 3 cut(s) 61, 157, 451
BssMI GATC 3 cut(s) 3, 127, 527
BssNI GRCGYC 1 cut(s) 252
BssT1I CCWWGG 1 cut(s) 61
Bst2UI CCWGG 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 225
BstACI GRCGYC 1 cut(s) 252
BstC8I GCNNGC 2 cut(s) 70, 319
BstDEI CTNAG 1 cut(s) 300
BstDSI CCRYGG 1 cut(s) 61
BstEII GGTNACC 1 cut(s) 211
BstENI CCTNNNNNAGG 1 cut(s) 28
BstF5I GGATG 4 cut(s) 82, 98, 175, 265
BstKTI GATC 3 cut(s) 6, 130, 530
BstMAI GTCTC 1 cut(s) 461
BstMBI GATC 3 cut(s) 3, 127, 527
BstMWI GCNNNNNNNGC 2 cut(s) 123, 318
BstNI CCWGG 1 cut(s) 158
BstNSI RCATGY 2 cut(s) 189, 415
BstPI GGTNACC 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 316
BstX2I RGATCY 1 cut(s) 527
BstYI RGATCY 1 cut(s) 527
BsuRI GGCC 2 cut(s) 60, 243
BtgI CCRYGG 1 cut(s) 61
BtsCI GGATG 4 cut(s) 82, 98, 175, 265
Cac8I GCNNGC 2 cut(s) 70, 319
Cfr10I RCCGGY 1 cut(s) 403
Cfr13I GGNCC 1 cut(s) 51
Csp6I GTAC 1 cut(s) 164
CviAII CATG 7 cut(s) 62, 73, 186, 245, 256, 412, 416
CviQI GTAC 1 cut(s) 164
DdeI CTNAG 1 cut(s) 300
DpnI GATC 3 cut(s) 5, 129, 529
DpnII GATC 3 cut(s) 3, 127, 527
EaeI YGGCCR 2 cut(s) 58, 241
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Ecl136II GAGCTC 1 cut(s) 519
Eco130I CCWWGG 1 cut(s) 61
Eco24I GRGCYC 1 cut(s) 521
Eco31I GGTCTC 1 cut(s) 461
Eco47I GGWCC 1 cut(s) 51
Eco53kI GAGCTC 1 cut(s) 519
Eco57I CTGAAG 3 cut(s) 254, 473, 492
Eco88I CYCGRG 1 cut(s) 458
Eco91I GGTNACC 1 cut(s) 211
EcoICRI GAGCTC 1 cut(s) 519
EcoNI CCTNNNNNAGG 1 cut(s) 28
EcoO65I GGTNACC 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 61
EcoT22I ATGCAT 1 cut(s) 417
EcoT38I GRGCYC 1 cut(s) 521
ErhI CCWWGG 1 cut(s) 61
FaeI CATG 7 cut(s) 65, 76, 189, 248, 259, 415, 419
FaiI YATR 9 cut(s) 63, 74, 179, 187, 246, 257, 287, 413, 417
FatI CATG 7 cut(s) 61, 72, 185, 244, 255, 411, 415
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 7 cut(s) 118, 146, 231, 241, 305, 322, 345
FokI GGATG 4 cut(s) 89, 105, 182, 272
FriOI GRGCYC 1 cut(s) 521
Fsp4HI GCNGC 7 cut(s) 118, 146, 231, 241, 305, 322, 345
GluI GCNGC 7 cut(s) 118, 146, 231, 241, 305, 322, 345
GsaI CCCAGC 2 cut(s) 15, 311
HaeIII GGCC 2 cut(s) 60, 243
HapII CCGG 2 cut(s) 54, 404
Hin1I GRCGYC 1 cut(s) 252
Hin1II CATG 7 cut(s) 65, 76, 189, 248, 259, 415, 419
HincII GTYRAC 2 cut(s) 250, 409
HindII GTYRAC 2 cut(s) 250, 409
HinfI GANTC 2 cut(s) 97, 328
HpaII CCGG 2 cut(s) 54, 404
HphI GGTGA 3 cut(s) 151, 205, 215
Hpy166II GTNNAC 3 cut(s) 164, 250, 409
Hpy188I TCNGA 2 cut(s) 8, 532
Hpy188III TCNNGA 3 cut(s) 152, 204, 458
Hpy8I GTNNAC 3 cut(s) 164, 250, 409
HpyCH4IV ACGT 2 cut(s) 108, 252
HpyCH4V TGCA 1 cut(s) 415
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 318
HpyF3I CTNAG 1 cut(s) 300
HpySE526I ACGT 2 cut(s) 108, 252
Hsp92I GRCGYC 1 cut(s) 252
Hsp92II CATG 7 cut(s) 65, 76, 189, 248, 259, 415, 419
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 127, 527
LmnI GCTCC 1 cut(s) 65
Lsp1109I GCAGC 1 cut(s) 316
LweI GCATC 1 cut(s) 280
MaeII ACGT 2 cut(s) 108, 252
MaeIII GTNAC 1 cut(s) 211
MalI GATC 3 cut(s) 5, 129, 529
MboI GATC 3 cut(s) 3, 127, 527
MboII GAAGA 2 cut(s) 212, 498
MflI RGATCY 1 cut(s) 527
MhlI GDGCHC 1 cut(s) 521
MlsI TGGCCA 1 cut(s) 60
MluNI TGGCCA 1 cut(s) 60
MlyI GAGTC 2 cut(s) 91, 322
Mox20I TGGCCA 1 cut(s) 60
Mph1103I ATGCAT 1 cut(s) 417
MscI TGGCCA 1 cut(s) 60
MseI TTAA 1 cut(s) 480
Msp20I TGGCCA 1 cut(s) 60
MspA1I CMGCKG 1 cut(s) 307
MspI CCGG 2 cut(s) 54, 404
MspR9I CCNGG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 158
MwoI GCNNNNNNNGC 2 cut(s) 123, 318
NcoI CCATGG 1 cut(s) 61
NdeII GATC 3 cut(s) 3, 127, 527
NlaIII CATG 7 cut(s) 65, 76, 189, 248, 259, 415, 419
NlaIV GGNNCC 2 cut(s) 67, 529
NmuCI GTSAC 1 cut(s) 211
NsiI ATGCAT 1 cut(s) 417
NspI RCATGY 2 cut(s) 189, 415
PaeR7I CTCGAG 1 cut(s) 458
PkrI GCNGC 7 cut(s) 119, 147, 232, 242, 306, 323, 346
PleI GAGTC 2 cut(s) 91, 322
PpsI GAGTC 2 cut(s) 91, 322
Psp124BI GAGCTC 1 cut(s) 521
Psp6I CCWGG 1 cut(s) 156
PspEI GGTNACC 1 cut(s) 211
PspFI CCCAGC 2 cut(s) 11, 307
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 2 cut(s) 67, 529
PspPI GGNCC 1 cut(s) 51
PsuI RGATCY 1 cut(s) 527
PvuII CAGCTG 1 cut(s) 307
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
SacI GAGCTC 1 cut(s) 521
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 7 cut(s) 118, 146, 231, 241, 305, 322, 345
Sau3AI GATC 3 cut(s) 3, 127, 527
Sau96I GGNCC 1 cut(s) 51
SchI GAGTC 2 cut(s) 91, 322
ScrFI CCNGG 1 cut(s) 158
SduI GDGCHC 1 cut(s) 521
SfaNI GCATC 1 cut(s) 280
Sfr274I CTCGAG 1 cut(s) 458
SinI GGWCC 1 cut(s) 51
SlaI CTCGAG 1 cut(s) 458
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
SstI GAGCTC 1 cut(s) 521
StyD4I CCNGG 1 cut(s) 156
StyI CCWWGG 1 cut(s) 61
TaiI ACGT 2 cut(s) 111, 255
TaqI TCGA 2 cut(s) 153, 459
TaqII GACCGA 1 cut(s) 443
TatI WGTACW 1 cut(s) 163
TauI GCSGC 6 cut(s) 120, 148, 233, 243, 324, 347
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 1 cut(s) 304
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 51
XagI CCTNNNNNAGG 1 cut(s) 28
XceI RCATGY 2 cut(s) 189, 415
XhoI CTCGAG 1 cut(s) 458
ZraI GACGTC 1 cut(s) 253
Zsp2I ATGCAT 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.