FvH4_5g24200

ankyrin repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0005106
Physical Location & Seq
Reverse (-)
15486259 .. 15488425
2167 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24200.t1

Sequence Viewer

Length: 522 bp
ATGCTGCGAGAGCAGGAGCGAGGGTCGCTCAGGCGGAGCTTGTCGAGGAGGCGGTCGTTTCGGTCTGGGTTGGGTATGGATGACAGAGGCTGGACTCTGCTGCATATCGGTTCTCGCAAGGGTGATCTGAAACAGGTGAGGCGACTTCTTGACGAGGGAATGGATGTGAATGTTGCTGCTTGGGGTCCCAAATCTAAAGGGATTACCCCACTTCACCTTGCGGCTGAGGGTGGCCATGTTGAGGTCATGGATGAGTTGCTTGAGCGTGGTGCTAATATTGATGCCAGAACTAAGGGTGCTTGCGGCTGGACTCCGCTTCACAATGCAGCCAAAGAGAGGAGGAGGGAAGCAGTCAAATTTCTAGTAGAGAATGGGGCATTCTTGCCAGATGACATGTATGATTGTAGGTTTAATCCTCCACTCCATTATTGCCCCGGTCTTGAGTGGGCTTATGAGGAGATGAAGCGTCTTCAGATAGAAACATCATCATCAGGGGACAGCTCTTACAGTTCTGAGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000278 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0001508 GO:0001932 GO:0001933 GO:0002028 GO:0003008 GO:0003254 GO:0003674 GO:0003824 GO:0004842 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005783 GO:0005794 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0006810 GO:0006888 GO:0006892 GO:0006893 GO:0006996 GO:0007009 GO:0007010 GO:0007016 GO:0007049 GO:0007154 GO:0007275 GO:0007399 GO:0007409 GO:0007528 GO:0008037 GO:0008092 GO:0008104 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009553 GO:0009566 GO:0009567 GO:0009628 GO:0009639 GO:0009642 GO:0009644 GO:0009653 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009962 GO:0009963 GO:0009986 GO:0009987 GO:0009988 GO:0010033 GO:0010035 GO:0010038 GO:0010218 GO:0010256 GO:0010313 GO:0010468 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0010647 GO:0010649 GO:0010650 GO:0010765 GO:0010959 GO:0010960 GO:0012505 GO:0014704 GO:0014731 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0016328 GO:0016528 GO:0016529 GO:0016567 GO:0016740 GO:0019220 GO:0019222 GO:0019226 GO:0019228 GO:0019538 GO:0019787 GO:0019899 GO:0019953 GO:0022008 GO:0022402 GO:0022407 GO:0022409 GO:0022412 GO:0022414 GO:0022607 GO:0022898 GO:0023052 GO:0030016 GO:0030017 GO:0030018 GO:0030030 GO:0030054 GO:0030154 GO:0030155 GO:0030182 GO:0030315 GO:0030424 GO:0030425 GO:0030507 GO:0030674 GO:0031175 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031537 GO:0031539 GO:0031540 GO:0031542 GO:0031594 GO:0031625 GO:0031674 GO:0032026 GO:0032268 GO:0032269 GO:0032386 GO:0032388 GO:0032409 GO:0032410 GO:0032411 GO:0032412 GO:0032413 GO:0032414 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032507 GO:0032879 GO:0032880 GO:0032989 GO:0032990 GO:0032991 GO:0033036 GO:0033157 GO:0033267 GO:0033268 GO:0034110 GO:0034112 GO:0034285 GO:0034613 GO:0034762 GO:0034763 GO:0034764 GO:0034765 GO:0034766 GO:0034767 GO:0035637 GO:0036211 GO:0036477 GO:0042221 GO:0042325 GO:0042326 GO:0042383 GO:0042391 GO:0042592 GO:0042886 GO:0042995 GO:0043001 GO:0043005 GO:0043034 GO:0043170 GO:0043194 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043266 GO:0043267 GO:0043269 GO:0043270 GO:0043271 GO:0043292 GO:0043412 GO:0044085 GO:0044091 GO:0044092 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044291 GO:0044304 GO:0044325 GO:0044389 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044456 GO:0044459 GO:0044463 GO:0044464 GO:0044703 GO:0045026 GO:0045184 GO:0045185 GO:0045202 GO:0045211 GO:0045296 GO:0045760 GO:0045785 GO:0045838 GO:0045936 GO:0046907 GO:0048193 GO:0048229 GO:0048468 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050808 GO:0050839 GO:0050877 GO:0050896 GO:0051049 GO:0051050 GO:0051051 GO:0051171 GO:0051172 GO:0051174 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051235 GO:0051246 GO:0051248 GO:0051301 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051716 GO:0055065 GO:0055080 GO:0060090 GO:0060255 GO:0060341 GO:0061024 GO:0061025 GO:0061564 GO:0061640 GO:0061936 GO:0061951 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070647 GO:0070727 GO:0070887 GO:0071241 GO:0071248 GO:0071286 GO:0071702 GO:0071704 GO:0071705 GO:0071709 GO:0071840 GO:0071944 GO:0072507 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0080090 GO:0080173 GO:0090087 GO:0090150 GO:0090313 GO:0090314 GO:0090316 GO:0097060 GO:0097447 GO:0097458 GO:0098590 GO:0098771 GO:0098794 GO:0098876 GO:0098900 GO:0098901 GO:0098902 GO:0099080 GO:0099081 GO:0099512 GO:0120025 GO:0120036 GO:0120038 GO:0120039 GO:0140096 GO:1900825 GO:1900827 GO:1901016 GO:1901017 GO:1901379 GO:1901380 GO:1901564 GO:1901700 GO:1902259 GO:1902260 GO:1902305 GO:1902307 GO:1902494 GO:1903047 GO:1903533 GO:1903817 GO:1903827 GO:1903829 GO:1904062 GO:1904063 GO:1904064 GO:1904181 GO:1904951 GO:1905475 GO:1905477 GO:1990234 GO:1990778 GO:2000649 GO:2000651 GO:2001257 GO:2001258 GO:2001259
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_3 Ank_4

Protein Analysis

174

Amino Acids

19.55

Weight (kDa)

7.77

Isoelectric Point (pI)

68.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 27 - 96 1.8e-11 Ankyrin repeats (3 copies)
Ank_2 PF12796 66 - 126 6.6e-14 Ankyrin repeats (3 copies)
Ank PF00023 67 - 98 8e-10 Ankyrin repeat
Ank_3 PF13606 67 - 95 1.4e-06 Ankyrin repeat
Ank_4 PF13637 71 - 122 1.7e-11 Ankyrin repeats (many copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 34, 52, 221, 303, 314
AcoI YGGCCR 1 cut(s) 232
AcsI RAATTY 1 cut(s) 356
AcuI CTGAAG 1 cut(s) 455
AfiI CCNNNNNNNGG 2 cut(s) 241, 336
AflIII ACRYGT 1 cut(s) 393
AluBI AGCT 3 cut(s) 39, 501, 519
AluI AGCT 3 cut(s) 39, 501, 519
AlwNI CAGNNNCTG 1 cut(s) 90
AoxI GGCC 1 cut(s) 232
ApeKI GCWGC 4 cut(s) 4, 100, 176, 326
ApoI RAATTY 1 cut(s) 356
AspS9I GGNCC 1 cut(s) 185
AsuC2I CCSGG 1 cut(s) 435
AsuHPI GGTGA 3 cut(s) 134, 148, 206
AvaII GGWCC 1 cut(s) 185
BalI TGGCCA 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 461
BbvCI CCTCAGC 1 cut(s) 225
BbvI GCAGC 3 cut(s) 87, 163, 338
BcnI CCSGG 1 cut(s) 435
BfaI CTAG 1 cut(s) 362
BisI GCNGC 6 cut(s) 5, 101, 177, 222, 304, 327
BlsI GCNGC 6 cut(s) 6, 102, 178, 223, 305, 328
Bme1390I CCNGG 1 cut(s) 435
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 2 cut(s) 186, 187
BmrFI CCNGG 1 cut(s) 435
BmsI GCATC 1 cut(s) 271
BpiI GAAGAC 1 cut(s) 461
BplI GAGNNNNNCTC 2 cut(s) 12, 44
Bpu10I CCTNAGC 2 cut(s) 29, 225
BpuEI CTTGAG 2 cut(s) 281, 461
BpuMI CCSGG 1 cut(s) 435
BsaJI CCNNGG 1 cut(s) 433
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bsc4I CCNNNNNNNGG 2 cut(s) 241, 336
BseDI CCNNGG 1 cut(s) 433
BseGI GGATG 3 cut(s) 85, 169, 256
BseLI CCNNNNNNNGG 2 cut(s) 241, 336
BseMII CTCAG 3 cut(s) 43, 216, 504
BseRI GAGGAG 4 cut(s) 61, 352, 355, 470
BseXI GCAGC 3 cut(s) 87, 163, 338
Bsh1285I CGRYCG 1 cut(s) 56
BshFI GGCC 1 cut(s) 234
BsiEI CGRYCG 1 cut(s) 56
BsiSI CCGG 1 cut(s) 435
BslFI GGGAC 2 cut(s) 171, 509
BslI CCNNNNNNNGG 2 cut(s) 241, 336
BsmFI GGGAC 2 cut(s) 171, 509
BsmI GAATGC 1 cut(s) 377
BsnI GGCC 1 cut(s) 234
Bsp143I GATC 1 cut(s) 124
BspACI CCGC 5 cut(s) 34, 52, 221, 303, 314
BspANI GGCC 1 cut(s) 234
BspCNI CTCAG 3 cut(s) 42, 217, 505
BspLI GGNNCC 2 cut(s) 186, 187
BssECI CCNNGG 1 cut(s) 433
BssMI GATC 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 509
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 4 cut(s) 29, 225, 291, 513
BstF5I GGATG 3 cut(s) 85, 169, 256
BstKTI GATC 1 cut(s) 127
BstMBI GATC 1 cut(s) 124
BstMCI CGRYCG 1 cut(s) 56
BstMWI GCNNNNNNNGC 2 cut(s) 10, 25
BstNSI RCATGY 1 cut(s) 397
BstSCI CCNGG 1 cut(s) 433
BstV1I GCAGC 3 cut(s) 87, 163, 338
BstV2I GAAGAC 1 cut(s) 461
BsuRI GGCC 1 cut(s) 234
BtsCI GGATG 3 cut(s) 85, 169, 256
Cac8I GCNNGC 1 cut(s) 301
CaiI CAGNNNCTG 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 185
CseI GACGC 1 cut(s) 455
CviAII CATG 3 cut(s) 236, 247, 394
CviJI RGCY 9 cut(s) 39, 90, 224, 234, 306, 329, 449, 501, 519
CviKI_1 RGCY 9 cut(s) 39, 90, 224, 234, 306, 329, 449, 501, 519
DdeI CTNAG 4 cut(s) 29, 225, 291, 513
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
EaeI YGGCCR 1 cut(s) 232
EciI GGCGGA 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 185
Eco57I CTGAAG 1 cut(s) 455
EcoO109I RGGNCCY 1 cut(s) 185
FaeI CATG 3 cut(s) 239, 250, 397
FaiI YATR 7 cut(s) 77, 105, 237, 248, 395, 399, 453
FaqI GGGAC 2 cut(s) 171, 509
FatI CATG 3 cut(s) 235, 246, 393
Fnu4HI GCNGC 6 cut(s) 5, 101, 177, 222, 304, 327
FokI GGATG 3 cut(s) 92, 176, 263
Fsp4HI GCNGC 6 cut(s) 5, 101, 177, 222, 304, 327
FspBI CTAG 1 cut(s) 362
GluI GCNGC 6 cut(s) 5, 101, 177, 222, 304, 327
HaeIII GGCC 1 cut(s) 234
HapII CCGG 1 cut(s) 435
HgaI GACGC 1 cut(s) 455
Hin1II CATG 3 cut(s) 239, 250, 397
HinfI GANTC 2 cut(s) 94, 310
HpaII CCGG 1 cut(s) 435
HphI GGTGA 3 cut(s) 134, 148, 206
Hpy188I TCNGA 3 cut(s) 129, 474, 514
Hpy188III TCNNGA 2 cut(s) 149, 440
HpyCH4III ACNGT 1 cut(s) 509
HpyCH4V TGCA 2 cut(s) 103, 326
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 25
HpyF3I CTNAG 4 cut(s) 29, 225, 291, 513
Hsp92II CATG 3 cut(s) 239, 250, 397
KflI GGGWCCC 1 cut(s) 185
Kzo9I GATC 1 cut(s) 124
LmnI GCTCC 2 cut(s) 16, 36
LpnPI CCDG 9 cut(s) 16, 51, 76, 119, 292, 298, 399, 448, 477
Lsp1109I GCAGC 3 cut(s) 87, 163, 338
LweI GCATC 1 cut(s) 271
MaeI CTAG 1 cut(s) 362
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MboII GAAGA 1 cut(s) 461
MlsI TGGCCA 1 cut(s) 234
MluCI AATT 1 cut(s) 356
MluNI TGGCCA 1 cut(s) 234
MlyI GAGTC 2 cut(s) 88, 304
Mox20I TGGCCA 1 cut(s) 234
MscI TGGCCA 1 cut(s) 234
MseI TTAA 1 cut(s) 411
Msp20I TGGCCA 1 cut(s) 234
MspI CCGG 1 cut(s) 435
MspR9I CCNGG 1 cut(s) 435
Mva1269I GAATGC 1 cut(s) 377
MwoI GCNNNNNNNGC 2 cut(s) 10, 25
NciI CCSGG 1 cut(s) 435
NdeII GATC 1 cut(s) 124
NlaIII CATG 3 cut(s) 239, 250, 397
NlaIV GGNNCC 2 cut(s) 186, 187
NspI RCATGY 1 cut(s) 397
PciI ACATGT 1 cut(s) 393
PctI GAATGC 1 cut(s) 377
PkrI GCNGC 6 cut(s) 6, 102, 178, 223, 305, 328
PleI GAGTC 2 cut(s) 88, 304
PpsI GAGTC 2 cut(s) 88, 304
PpuMI RGGWCCY 1 cut(s) 185
PscI ACATGT 1 cut(s) 393
Psp5II RGGWCCY 1 cut(s) 185
PspN4I GGNNCC 2 cut(s) 186, 187
PspPI GGNCC 1 cut(s) 185
PspPPI RGGWCCY 1 cut(s) 185
PstNI CAGNNNCTG 1 cut(s) 90
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 6 cut(s) 5, 101, 177, 222, 304, 327
Sau3AI GATC 1 cut(s) 124
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 2 cut(s) 88, 304
ScrFI CCNGG 1 cut(s) 435
SetI ASST 7 cut(s) 41, 138, 219, 246, 410, 503, 521
SfaNI GCATC 1 cut(s) 271
SinI GGWCC 1 cut(s) 185
SmlI CTYRAG 2 cut(s) 260, 440
SmoI CTYRAG 2 cut(s) 260, 440
Sse9I AATT 1 cut(s) 356
SsiI CCGC 5 cut(s) 34, 52, 221, 303, 314
SspI AATATT 1 cut(s) 277
SspMI CTAG 1 cut(s) 362
StyD4I CCNGG 1 cut(s) 433
TaaI ACNGT 1 cut(s) 509
TaqI TCGA 1 cut(s) 44
TaqII GACCGA 1 cut(s) 51
TasI AATT 1 cut(s) 356
TauI GCSGC 2 cut(s) 224, 306
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TseI GCWGC 4 cut(s) 4, 100, 176, 326
TspDTI ATGAA 1 cut(s) 476
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 1 cut(s) 356
XceI RCATGY 1 cut(s) 397
XspI CTAG 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.