RLG00000002764

ankyrin repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0005106
Physical Location & Seq
Forward (+)
39447774 .. 39450235
2462 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002764

Sequence Viewer

Length: 585 bp
ATGAATTTAATCTCGTCGCCGCTGGCCGTTTCCGCCCTCGTCATCTTCGAGATTGAGAATCTTCGTGTCTTCGAGCAGGAGCGAGGATCACTCAGGCGGAGCTTGTCGAGGAGGCGTTCGTTTCGGTCTGGGGCGGGTATGGATGATAGGGGATGGACTCTGCTGCATGTCGGTTCTCGCAAGGGTGATCTGAAACAGGTGAGGCGACTTCTTGACGAGGGAATGGATGTGAATGTAGCTGCTTGGGGTCCCAAATCTAAAGGGATTACCCCTCTTCACCTCGCTGCTGAGGGTGGCCATCTTGAGGTTATGGATGAGTTGCTTGAGCGTGGTGCCAACATTGATGCCAGAACCAAGGGTGCTTGCGGCTGGACTCCGCTTCACAATGCAGCCAAAGAAAGGAGGAGGGAAGCAGTCAAATTTCTAGTAGAGAATGGGGCATTCTTGCCAGATGACATGTATGATTGTAGGTTTAATCCTCCACTCCATTACTGCCCTGGTCTTGAGTGGGCTTATGAGGAGATGAAGCGTCTCCAGTTAGAAACATCATCGTCAGGGGACAGCTCTTACAGCTCTGAGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000278 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0001508 GO:0001932 GO:0001933 GO:0002028 GO:0003008 GO:0003254 GO:0003674 GO:0003824 GO:0004842 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005783 GO:0005794 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0006810 GO:0006888 GO:0006892 GO:0006893 GO:0006996 GO:0007009 GO:0007010 GO:0007016 GO:0007049 GO:0007154 GO:0007275 GO:0007399 GO:0007409 GO:0007528 GO:0008037 GO:0008092 GO:0008104 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009553 GO:0009566 GO:0009567 GO:0009628 GO:0009639 GO:0009642 GO:0009644 GO:0009653 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009962 GO:0009963 GO:0009986 GO:0009987 GO:0009988 GO:0010033 GO:0010035 GO:0010038 GO:0010218 GO:0010256 GO:0010313 GO:0010468 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0010647 GO:0010649 GO:0010650 GO:0010765 GO:0010959 GO:0010960 GO:0012505 GO:0014704 GO:0014731 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0016328 GO:0016528 GO:0016529 GO:0016567 GO:0016740 GO:0019220 GO:0019222 GO:0019226 GO:0019228 GO:0019538 GO:0019787 GO:0019899 GO:0019953 GO:0022008 GO:0022402 GO:0022407 GO:0022409 GO:0022412 GO:0022414 GO:0022607 GO:0022898 GO:0023052 GO:0030016 GO:0030017 GO:0030018 GO:0030030 GO:0030054 GO:0030154 GO:0030155 GO:0030182 GO:0030315 GO:0030424 GO:0030425 GO:0030507 GO:0030674 GO:0031175 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031537 GO:0031539 GO:0031540 GO:0031542 GO:0031594 GO:0031625 GO:0031674 GO:0032026 GO:0032268 GO:0032269 GO:0032386 GO:0032388 GO:0032409 GO:0032410 GO:0032411 GO:0032412 GO:0032413 GO:0032414 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032507 GO:0032879 GO:0032880 GO:0032989 GO:0032990 GO:0032991 GO:0033036 GO:0033157 GO:0033267 GO:0033268 GO:0034110 GO:0034112 GO:0034285 GO:0034613 GO:0034762 GO:0034763 GO:0034764 GO:0034765 GO:0034766 GO:0034767 GO:0035637 GO:0036211 GO:0036477 GO:0042221 GO:0042325 GO:0042326 GO:0042383 GO:0042391 GO:0042592 GO:0042886 GO:0042995 GO:0043001 GO:0043005 GO:0043034 GO:0043170 GO:0043194 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043266 GO:0043267 GO:0043269 GO:0043270 GO:0043271 GO:0043292 GO:0043412 GO:0044085 GO:0044091 GO:0044092 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044291 GO:0044304 GO:0044325 GO:0044389 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044456 GO:0044459 GO:0044463 GO:0044464 GO:0044703 GO:0045026 GO:0045184 GO:0045185 GO:0045202 GO:0045211 GO:0045296 GO:0045760 GO:0045785 GO:0045838 GO:0045936 GO:0046907 GO:0048193 GO:0048229 GO:0048468 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050808 GO:0050839 GO:0050877 GO:0050896 GO:0051049 GO:0051050 GO:0051051 GO:0051171 GO:0051172 GO:0051174 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051235 GO:0051246 GO:0051248 GO:0051301 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051716 GO:0055065 GO:0055080 GO:0060090 GO:0060255 GO:0060341 GO:0061024 GO:0061025 GO:0061564 GO:0061640 GO:0061936 GO:0061951 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070647 GO:0070727 GO:0070887 GO:0071241 GO:0071248 GO:0071286 GO:0071702 GO:0071704 GO:0071705 GO:0071709 GO:0071840 GO:0071944 GO:0072507 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0080090 GO:0080173 GO:0090087 GO:0090150 GO:0090313 GO:0090314 GO:0090316 GO:0097060 GO:0097447 GO:0097458 GO:0098590 GO:0098771 GO:0098794 GO:0098876 GO:0098900 GO:0098901 GO:0098902 GO:0099080 GO:0099081 GO:0099512 GO:0120025 GO:0120036 GO:0120038 GO:0120039 GO:0140096 GO:1900825 GO:1900827 GO:1901016 GO:1901017 GO:1901379 GO:1901380 GO:1901564 GO:1901700 GO:1902259 GO:1902260 GO:1902305 GO:1902307 GO:1902494 GO:1903047 GO:1903533 GO:1903817 GO:1903827 GO:1903829 GO:1904062 GO:1904063 GO:1904064 GO:1904181 GO:1904951 GO:1905475 GO:1905477 GO:1990234 GO:1990778 GO:2000649 GO:2000651 GO:2001257 GO:2001258 GO:2001259
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_3 Ank_4

Protein Analysis

195

Amino Acids

21.76

Weight (kDa)

6.53

Isoelectric Point (pI)

63.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 47 - 117 1.8e-11 Ankyrin repeats (3 copies)
Ank_2 PF12796 87 - 147 8.9e-14 Ankyrin repeats (3 copies)
Ank PF00023 88 - 119 1e-09 Ankyrin repeat
Ank_3 PF13606 88 - 116 1.6e-06 Ankyrin repeat
Ank_4 PF13637 92 - 143 1.1e-11 Ankyrin repeats (many copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 332
AciI CCGC 6 cut(s) 20, 33, 97, 134, 366, 377
AclWI GGATC 1 cut(s) 94
AcoI YGGCCR 2 cut(s) 24, 295
AcsI RAATTY 2 cut(s) 4, 419
AfiI CCNNNNNNNGG 2 cut(s) 304, 399
AflIII ACRYGT 1 cut(s) 456
AjnI CCWGG 1 cut(s) 496
AluBI AGCT 5 cut(s) 102, 239, 564, 573, 582
AluI AGCT 5 cut(s) 102, 239, 564, 573, 582
Alw26I GTCTC 1 cut(s) 536
AlwI GGATC 1 cut(s) 94
AoxI GGCC 2 cut(s) 24, 295
ApeKI GCWGC 4 cut(s) 163, 239, 284, 389
ApoI RAATTY 2 cut(s) 4, 419
AspS9I GGNCC 1 cut(s) 248
AsuHPI GGTGA 3 cut(s) 197, 211, 269
AvaII GGWCC 1 cut(s) 248
BalI TGGCCA 1 cut(s) 297
BanI GGYRCC 1 cut(s) 332
BbsI GAAGAC 1 cut(s) 61
BbvCI CCTCAGC 1 cut(s) 288
BbvI GCAGC 4 cut(s) 150, 226, 271, 401
BccI CCATC 2 cut(s) 147, 306
BceAI ACGGC 1 cut(s) 11
BciT130I CCWGG 1 cut(s) 498
BcoDI GTCTC 1 cut(s) 536
BfaI CTAG 1 cut(s) 425
BisI GCNGC 6 cut(s) 20, 164, 240, 285, 367, 390
BlsI GCNGC 6 cut(s) 21, 165, 241, 286, 368, 391
Bme1390I CCNGG 1 cut(s) 498
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 3 cut(s) 249, 250, 334
BmrFI CCNGG 1 cut(s) 498
BmsI GCATC 1 cut(s) 334
BpiI GAAGAC 1 cut(s) 61
BplI GAGNNNNNCTC 2 cut(s) 75, 107
BpmI CTGGAG 1 cut(s) 518
Bpu10I CCTNAGC 1 cut(s) 288
BpuEI CTTGAG 3 cut(s) 323, 344, 524
BsaJI CCNNGG 2 cut(s) 354, 496
Bsc4I CCNNNNNNNGG 2 cut(s) 304, 399
Bse1I ACTGG 1 cut(s) 535
BseBI CCWGG 1 cut(s) 498
BseDI CCNNGG 2 cut(s) 354, 496
BseGI GGATG 4 cut(s) 148, 158, 232, 319
BseLI CCNNNNNNNGG 2 cut(s) 304, 399
BseMII CTCAG 3 cut(s) 106, 279, 567
BseNI ACTGG 1 cut(s) 535
BseRI GAGGAG 3 cut(s) 124, 418, 533
BseXI GCAGC 4 cut(s) 150, 226, 271, 401
BshFI GGCC 2 cut(s) 26, 297
BshNI GGYRCC 1 cut(s) 332
BslFI GGGAC 2 cut(s) 234, 572
BslI CCNNNNNNNGG 2 cut(s) 304, 399
BsmAI GTCTC 1 cut(s) 536
BsmBI CGTCTC 1 cut(s) 536
BsmFI GGGAC 2 cut(s) 234, 572
BsmI GAATGC 1 cut(s) 440
BsnI GGCC 2 cut(s) 26, 297
Bsp143I GATC 2 cut(s) 86, 187
BspACI CCGC 6 cut(s) 20, 33, 97, 134, 366, 377
BspANI GGCC 2 cut(s) 26, 297
BspCNI CTCAG 3 cut(s) 105, 280, 568
BspLI GGNNCC 3 cut(s) 249, 250, 334
BspPI GGATC 1 cut(s) 94
BspT107I GGYRCC 1 cut(s) 332
BsrI ACTGG 1 cut(s) 535
BssECI CCNNGG 2 cut(s) 354, 496
BssMI GATC 2 cut(s) 86, 187
BssT1I CCWWGG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 498
Bst6I CTCTTC 1 cut(s) 279
BstC8I GCNNGC 2 cut(s) 24, 364
BstDEI CTNAG 3 cut(s) 92, 288, 576
BstF5I GGATG 4 cut(s) 148, 158, 232, 319
BstKTI GATC 2 cut(s) 89, 190
BstMAI GTCTC 1 cut(s) 536
BstMBI GATC 2 cut(s) 86, 187
BstMWI GCNNNNNNNGC 3 cut(s) 32, 570, 579
BstNI CCWGG 1 cut(s) 498
BstNSI RCATGY 2 cut(s) 170, 460
BstSCI CCNGG 1 cut(s) 496
BstV1I GCAGC 4 cut(s) 150, 226, 271, 401
BstV2I GAAGAC 1 cut(s) 61
BsuRI GGCC 2 cut(s) 26, 297
BtsCI GGATG 4 cut(s) 148, 158, 232, 319
Cac8I GCNNGC 2 cut(s) 24, 364
Cfr13I GGNCC 1 cut(s) 248
CseI GACGC 1 cut(s) 518
CviAII CATG 2 cut(s) 167, 457
DdeI CTNAG 3 cut(s) 92, 288, 576
DpnI GATC 2 cut(s) 88, 189
DpnII GATC 2 cut(s) 86, 187
EaeI YGGCCR 2 cut(s) 24, 295
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
EciI GGCGGA 2 cut(s) 22, 112
Eco130I CCWWGG 1 cut(s) 354
Eco47I GGWCC 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 496
EcoT14I CCWWGG 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 354
Esp3I CGTCTC 1 cut(s) 536
FaeI CATG 2 cut(s) 170, 460
FaiI YATR 6 cut(s) 140, 168, 311, 458, 462, 516
FaqI GGGAC 2 cut(s) 234, 572
FatI CATG 2 cut(s) 166, 456
FauI CCCGC 1 cut(s) 127
Fnu4HI GCNGC 6 cut(s) 20, 164, 240, 285, 367, 390
FokI GGATG 4 cut(s) 155, 165, 239, 326
Fsp4HI GCNGC 6 cut(s) 20, 164, 240, 285, 367, 390
FspBI CTAG 1 cut(s) 425
GluI GCNGC 6 cut(s) 20, 164, 240, 285, 367, 390
GsuI CTGGAG 1 cut(s) 518
HaeIII GGCC 2 cut(s) 26, 297
HgaI GACGC 1 cut(s) 518
Hin1II CATG 2 cut(s) 170, 460
HinfI GANTC 3 cut(s) 58, 157, 373
HphI GGTGA 3 cut(s) 197, 211, 269
Hpy188I TCNGA 2 cut(s) 192, 577
Hpy188III TCNNGA 4 cut(s) 49, 212, 302, 503
Hpy99I CGWCG 1 cut(s) 19
HpyCH4V TGCA 2 cut(s) 166, 389
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 570, 579
HpyF3I CTNAG 3 cut(s) 92, 288, 576
Hsp92II CATG 2 cut(s) 170, 460
KflI GGGWCCC 1 cut(s) 248
Kzo9I GATC 2 cut(s) 86, 187
LmnI GCTCC 2 cut(s) 79, 99
Lsp1109I GCAGC 4 cut(s) 150, 226, 271, 401
LweI GCATC 1 cut(s) 334
MaeI CTAG 1 cut(s) 425
MalI GATC 2 cut(s) 88, 189
MboI GATC 2 cut(s) 86, 187
MboII GAAGA 4 cut(s) 37, 53, 61, 266
MlsI TGGCCA 1 cut(s) 297
MluCI AATT 2 cut(s) 4, 419
MluNI TGGCCA 1 cut(s) 297
MlyI GAGTC 2 cut(s) 151, 367
Mox20I TGGCCA 1 cut(s) 297
MscI TGGCCA 1 cut(s) 297
MseI TTAA 2 cut(s) 8, 474
Msp20I TGGCCA 1 cut(s) 297
MspA1I CMGCKG 1 cut(s) 22
MspR9I CCNGG 1 cut(s) 498
Mva1269I GAATGC 1 cut(s) 440
MvaI CCWGG 1 cut(s) 498
MwoI GCNNNNNNNGC 3 cut(s) 32, 570, 579
NdeII GATC 2 cut(s) 86, 187
NlaIII CATG 2 cut(s) 170, 460
NlaIV GGNNCC 3 cut(s) 249, 250, 334
NspI RCATGY 2 cut(s) 170, 460
PciI ACATGT 1 cut(s) 456
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PctI GAATGC 1 cut(s) 440
PfeI GAWTC 1 cut(s) 58
PkrI GCNGC 6 cut(s) 21, 165, 241, 286, 368, 391
PleI GAGTC 2 cut(s) 151, 367
PpsI GAGTC 2 cut(s) 151, 367
PpuMI RGGWCCY 1 cut(s) 248
PscI ACATGT 1 cut(s) 456
Psp5II RGGWCCY 1 cut(s) 248
Psp6I CCWGG 1 cut(s) 496
PspGI CCWGG 1 cut(s) 496
PspN4I GGNNCC 3 cut(s) 249, 250, 334
PspPI GGNCC 1 cut(s) 248
PspPPI RGGWCCY 1 cut(s) 248
SaqAI TTAA 2 cut(s) 8, 474
SatI GCNGC 6 cut(s) 20, 164, 240, 285, 367, 390
Sau3AI GATC 2 cut(s) 86, 187
Sau96I GGNCC 1 cut(s) 248
SchI GAGTC 2 cut(s) 151, 367
ScrFI CCNGG 1 cut(s) 498
SetI ASST 9 cut(s) 104, 201, 241, 282, 309, 473, 566, 575, 584
SfaNI GCATC 1 cut(s) 334
SinI GGWCC 1 cut(s) 248
SmlI CTYRAG 3 cut(s) 302, 323, 503
SmoI CTYRAG 3 cut(s) 302, 323, 503
Sse9I AATT 2 cut(s) 4, 419
SsiI CCGC 6 cut(s) 20, 33, 97, 134, 366, 377
SspMI CTAG 1 cut(s) 425
StyD4I CCNGG 1 cut(s) 496
StyI CCWWGG 1 cut(s) 354
TaqI TCGA 3 cut(s) 48, 72, 107
TaqII GACCGA 1 cut(s) 114
TasI AATT 2 cut(s) 4, 419
TauI GCSGC 2 cut(s) 22, 369
TfiI GAWTC 1 cut(s) 58
Tru1I TTAA 2 cut(s) 8, 474
Tru9I TTAA 2 cut(s) 8, 474
TseI GCWGC 4 cut(s) 163, 239, 284, 389
TspDTI ATGAA 2 cut(s) 17, 539
VpaK11BI GGWCC 1 cut(s) 248
XapI RAATTY 2 cut(s) 4, 419
XceI RCATGY 2 cut(s) 170, 460
XcmI CCANNNNNNNNNTGG 1 cut(s) 494
XspI CTAG 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.