Rw2G044960

ankyrin repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0005106
Physical Location & Seq
Reverse (-)
71796197 .. 71796646
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G044960.1

Sequence Viewer

Length: 450 bp
ATGGATGATAGGGGATGGACTCTACTTCACATTGGTTGCCGCAAGGGTGATCTCAAAGAGGTGAAGCGGCTTCTCAACCAGGGTGTACTGGATGTGAATGTGGCTACATGCAGTGGTCAAAAATCAAGAGGGGTCACGCCTCTTCACCTCGCCGCAGAGGGCGGCCATGTTGACGTCATGGATGAGTTGCTTCAGCGTGGGGCTAACATAGATGCTAGAACTAAGCAGCTGGGCAGTGCTTGCGGCTGGACTCCGCTTCACAATGCAGCGAAAGAGAGGAGGAGGGAGGCAGTGAAGTTTCTGGTGGAGAATGGGGCGTTCTTGCCGGTTGACATGCAGGATTGTAGGTTTAACCCTCCACTCCATTACTGCCTCGGTCTCGAGTGGGCTTACGAGGACATGAAACGGCTTCAGCAACAAACGTCATCGTCAGGGGAGAGCTCTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000278 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0001508 GO:0001932 GO:0001933 GO:0002028 GO:0003008 GO:0003254 GO:0003674 GO:0003824 GO:0004842 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005783 GO:0005794 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0006810 GO:0006888 GO:0006892 GO:0006893 GO:0006996 GO:0007009 GO:0007010 GO:0007016 GO:0007049 GO:0007154 GO:0007275 GO:0007399 GO:0007409 GO:0007528 GO:0008037 GO:0008092 GO:0008104 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009553 GO:0009566 GO:0009567 GO:0009628 GO:0009639 GO:0009642 GO:0009644 GO:0009653 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009962 GO:0009963 GO:0009986 GO:0009987 GO:0009988 GO:0010033 GO:0010035 GO:0010038 GO:0010218 GO:0010256 GO:0010313 GO:0010468 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0010647 GO:0010649 GO:0010650 GO:0010765 GO:0010959 GO:0010960 GO:0012505 GO:0014704 GO:0014731 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0016328 GO:0016528 GO:0016529 GO:0016567 GO:0016740 GO:0019220 GO:0019222 GO:0019226 GO:0019228 GO:0019538 GO:0019787 GO:0019899 GO:0019953 GO:0022008 GO:0022402 GO:0022407 GO:0022409 GO:0022412 GO:0022414 GO:0022607 GO:0022898 GO:0023052 GO:0030016 GO:0030017 GO:0030018 GO:0030030 GO:0030054 GO:0030154 GO:0030155 GO:0030182 GO:0030315 GO:0030424 GO:0030425 GO:0030507 GO:0030674 GO:0031175 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031537 GO:0031539 GO:0031540 GO:0031542 GO:0031594 GO:0031625 GO:0031674 GO:0032026 GO:0032268 GO:0032269 GO:0032386 GO:0032388 GO:0032409 GO:0032410 GO:0032411 GO:0032412 GO:0032413 GO:0032414 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032507 GO:0032879 GO:0032880 GO:0032989 GO:0032990 GO:0032991 GO:0033036 GO:0033157 GO:0033267 GO:0033268 GO:0034110 GO:0034112 GO:0034285 GO:0034613 GO:0034762 GO:0034763 GO:0034764 GO:0034765 GO:0034766 GO:0034767 GO:0035637 GO:0036211 GO:0036477 GO:0042221 GO:0042325 GO:0042326 GO:0042383 GO:0042391 GO:0042592 GO:0042886 GO:0042995 GO:0043001 GO:0043005 GO:0043034 GO:0043170 GO:0043194 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043266 GO:0043267 GO:0043269 GO:0043270 GO:0043271 GO:0043292 GO:0043412 GO:0044085 GO:0044091 GO:0044092 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044291 GO:0044304 GO:0044325 GO:0044389 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044456 GO:0044459 GO:0044463 GO:0044464 GO:0044703 GO:0045026 GO:0045184 GO:0045185 GO:0045202 GO:0045211 GO:0045296 GO:0045760 GO:0045785 GO:0045838 GO:0045936 GO:0046907 GO:0048193 GO:0048229 GO:0048468 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050808 GO:0050839 GO:0050877 GO:0050896 GO:0051049 GO:0051050 GO:0051051 GO:0051171 GO:0051172 GO:0051174 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051235 GO:0051246 GO:0051248 GO:0051301 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051716 GO:0055065 GO:0055080 GO:0060090 GO:0060255 GO:0060341 GO:0061024 GO:0061025 GO:0061564 GO:0061640 GO:0061936 GO:0061951 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070647 GO:0070727 GO:0070887 GO:0071241 GO:0071248 GO:0071286 GO:0071702 GO:0071704 GO:0071705 GO:0071709 GO:0071840 GO:0071944 GO:0072507 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0080090 GO:0080173 GO:0090087 GO:0090150 GO:0090313 GO:0090314 GO:0090316 GO:0097060 GO:0097447 GO:0097458 GO:0098590 GO:0098771 GO:0098794 GO:0098876 GO:0098900 GO:0098901 GO:0098902 GO:0099080 GO:0099081 GO:0099512 GO:0120025 GO:0120036 GO:0120038 GO:0120039 GO:0140096 GO:1900825 GO:1900827 GO:1901016 GO:1901017 GO:1901379 GO:1901380 GO:1901564 GO:1901700 GO:1902259 GO:1902260 GO:1902305 GO:1902307 GO:1902494 GO:1903047 GO:1903533 GO:1903817 GO:1903827 GO:1903829 GO:1904062 GO:1904063 GO:1904064 GO:1904181 GO:1904951 GO:1905475 GO:1905477 GO:1990234 GO:1990778 GO:2000649 GO:2000651 GO:2001257 GO:2001258 GO:2001259
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_3 Ank_4

Protein Analysis

149

Amino Acids

16.56

Weight (kDa)

6.95

Isoelectric Point (pI)

48.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 2 - 73 5.6e-12 Ankyrin repeats (3 copies)
Ank PF00023 44 - 75 7.7e-10 Ankyrin repeat
Ank_3 PF13606 44 - 72 2.7e-06 Ankyrin repeat
Ank_4 PF13637 48 - 102 2.4e-10 Ankyrin repeats (many copies)
Ank_2 PF12796 80 - 125 7.9e-06 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 177
AciI CCGC 6 cut(s) 40, 67, 153, 162, 243, 254
AcoI YGGCCR 1 cut(s) 163
AcuI CTGAAG 2 cut(s) 176, 395
AcyI GRCGYC 1 cut(s) 174
AfaI GTAC 1 cut(s) 87
AjnI CCWGG 1 cut(s) 78
AluBI AGCT 2 cut(s) 229, 441
AluI AGCT 2 cut(s) 229, 441
Alw21I GWGCWC 1 cut(s) 443
Alw26I GTCTC 1 cut(s) 383
Ama87I CYCGRG 1 cut(s) 380
AoxI GGCC 1 cut(s) 163
ApeKI GCWGC 2 cut(s) 226, 266
AsuHPI GGTGA 3 cut(s) 59, 73, 137
AvaI CYCGRG 1 cut(s) 380
BanII GRGCYC 1 cut(s) 443
Bbv12I GWGCWC 1 cut(s) 443
BbvI GCAGC 2 cut(s) 238, 278
BccI CCATC 1 cut(s) 9
BceAI ACGGC 1 cut(s) 422
BciT130I CCWGG 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 1 cut(s) 216
BisI GCNGC 7 cut(s) 40, 68, 153, 163, 227, 244, 267
BlsI GCNGC 7 cut(s) 41, 69, 154, 164, 228, 245, 268
Bme1390I CCNGG 1 cut(s) 80
BmeT110I CYCGRG 1 cut(s) 380
BmrFI CCNGG 1 cut(s) 80
BmsI GCATC 1 cut(s) 202
BsaHI GRCGYC 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 383
BsaJI CCNNGG 2 cut(s) 79, 373
Bse118I RCCGGY 1 cut(s) 325
Bse1I ACTGG 1 cut(s) 93
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 2 cut(s) 79, 373
BseGI GGATG 4 cut(s) 10, 20, 97, 187
BseNI ACTGG 1 cut(s) 93
BseRI GAGGAG 2 cut(s) 292, 295
BseXI GCAGC 2 cut(s) 238, 278
BseYI CCCAGC 1 cut(s) 229
BshFI GGCC 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 443
BsiHKCI CYCGRG 1 cut(s) 380
BsiSI CCGG 1 cut(s) 326
BsmAI GTCTC 1 cut(s) 383
BsnI GGCC 1 cut(s) 165
Bso31I GGTCTC 1 cut(s) 383
BsoBI CYCGRG 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 443
Bsp143I GATC 1 cut(s) 49
BspACI CCGC 6 cut(s) 40, 67, 153, 162, 243, 254
BspANI GGCC 1 cut(s) 165
BspTNI GGTCTC 1 cut(s) 383
BsrFI RCCGGY 1 cut(s) 325
BsrI ACTGG 1 cut(s) 93
BssAI RCCGGY 1 cut(s) 325
BssECI CCNNGG 2 cut(s) 79, 373
BssMI GATC 1 cut(s) 49
BssNI GRCGYC 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 80
Bst6I CTCTTC 1 cut(s) 147
BstACI GRCGYC 1 cut(s) 174
BstAPI GCANNNNNTGC 1 cut(s) 240
BstC8I GCNNGC 1 cut(s) 241
BstDEI CTNAG 1 cut(s) 222
BstF5I GGATG 4 cut(s) 10, 20, 97, 187
BstKTI GATC 1 cut(s) 52
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 1 cut(s) 49
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstNI CCWGG 1 cut(s) 80
BstNSI RCATGY 2 cut(s) 111, 337
BstSCI CCNGG 1 cut(s) 78
BstV1I GCAGC 2 cut(s) 238, 278
BsuRI GGCC 1 cut(s) 165
BtsCI GGATG 4 cut(s) 10, 20, 97, 187
BtsI GCAGTG 3 cut(s) 118, 241, 297
BtsIMutI CAGTG 3 cut(s) 118, 241, 297
Cac8I GCNNGC 1 cut(s) 241
Cfr10I RCCGGY 1 cut(s) 325
Csp6I GTAC 1 cut(s) 86
CviAII CATG 5 cut(s) 108, 167, 178, 334, 400
CviJI RGCY 9 cut(s) 70, 104, 165, 203, 229, 246, 389, 409, 441
CviKI_1 RGCY 9 cut(s) 70, 104, 165, 203, 229, 246, 389, 409, 441
CviQI GTAC 1 cut(s) 86
DdeI CTNAG 1 cut(s) 222
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
EaeI YGGCCR 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Ecl136II GAGCTC 1 cut(s) 441
Eco24I GRGCYC 1 cut(s) 443
Eco31I GGTCTC 1 cut(s) 383
Eco53kI GAGCTC 1 cut(s) 441
Eco57I CTGAAG 2 cut(s) 176, 395
Eco88I CYCGRG 1 cut(s) 380
EcoICRI GAGCTC 1 cut(s) 441
EcoRII CCWGG 1 cut(s) 78
EcoT38I GRGCYC 1 cut(s) 443
FaeI CATG 5 cut(s) 111, 170, 181, 337, 403
FaiI YATR 6 cut(s) 109, 168, 179, 209, 335, 401
FatI CATG 5 cut(s) 107, 166, 177, 333, 399
Fnu4HI GCNGC 7 cut(s) 40, 68, 153, 163, 227, 244, 267
FokI GGATG 4 cut(s) 17, 27, 104, 194
FriOI GRGCYC 1 cut(s) 443
Fsp4HI GCNGC 7 cut(s) 40, 68, 153, 163, 227, 244, 267
FspBI CTAG 1 cut(s) 216
GluI GCNGC 7 cut(s) 40, 68, 153, 163, 227, 244, 267
GsaI CCCAGC 1 cut(s) 233
HaeIII GGCC 1 cut(s) 165
HapII CCGG 1 cut(s) 326
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 5 cut(s) 111, 170, 181, 337, 403
HincII GTYRAC 2 cut(s) 172, 331
HindII GTYRAC 2 cut(s) 172, 331
HinfI GANTC 2 cut(s) 19, 250
HpaII CCGG 1 cut(s) 326
HphI GGTGA 3 cut(s) 59, 73, 137
Hpy166II GTNNAC 3 cut(s) 86, 172, 331
Hpy188III TCNNGA 2 cut(s) 126, 380
Hpy8I GTNNAC 3 cut(s) 86, 172, 331
HpyCH4IV ACGT 2 cut(s) 174, 422
HpyCH4V TGCA 3 cut(s) 111, 266, 337
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
HpyF3I CTNAG 1 cut(s) 222
HpySE526I ACGT 2 cut(s) 174, 422
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 5 cut(s) 111, 170, 181, 337, 403
Kzo9I GATC 1 cut(s) 49
LpnPI CCDG 9 cut(s) 65, 74, 92, 215, 232, 287, 323, 339, 417
Lsp1109I GCAGC 2 cut(s) 238, 278
LweI GCATC 1 cut(s) 202
MaeI CTAG 1 cut(s) 216
MaeII ACGT 2 cut(s) 174, 422
MaeIII GTNAC 1 cut(s) 133
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MboII GAAGA 1 cut(s) 134
MhlI GDGCHC 1 cut(s) 443
MlyI GAGTC 2 cut(s) 13, 244
MseI TTAA 1 cut(s) 351
MspA1I CMGCKG 1 cut(s) 229
MspI CCGG 1 cut(s) 326
MspR9I CCNGG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 240
NdeII GATC 1 cut(s) 49
NlaIII CATG 5 cut(s) 111, 170, 181, 337, 403
NmuCI GTSAC 1 cut(s) 133
NspI RCATGY 2 cut(s) 111, 337
PaeR7I CTCGAG 1 cut(s) 380
PkrI GCNGC 7 cut(s) 41, 69, 154, 164, 228, 245, 268
PleI GAGTC 2 cut(s) 13, 244
PpsI GAGTC 2 cut(s) 13, 244
Psp124BI GAGCTC 1 cut(s) 443
Psp6I CCWGG 1 cut(s) 78
PspFI CCCAGC 1 cut(s) 229
PspGI CCWGG 1 cut(s) 78
PvuII CAGCTG 1 cut(s) 229
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
SacI GAGCTC 1 cut(s) 443
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 7 cut(s) 40, 68, 153, 163, 227, 244, 267
Sau3AI GATC 1 cut(s) 49
SchI GAGTC 2 cut(s) 13, 244
ScrFI CCNGG 1 cut(s) 80
SduI GDGCHC 1 cut(s) 443
SetI ASST 7 cut(s) 63, 150, 177, 231, 350, 425, 443
SfaNI GCATC 1 cut(s) 202
Sfr274I CTCGAG 1 cut(s) 380
SlaI CTCGAG 1 cut(s) 380
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
SsiI CCGC 6 cut(s) 40, 67, 153, 162, 243, 254
SspMI CTAG 1 cut(s) 216
SstI GAGCTC 1 cut(s) 443
StyD4I CCNGG 1 cut(s) 78
TaiI ACGT 2 cut(s) 177, 425
TaqI TCGA 1 cut(s) 381
TaqII GACCGA 1 cut(s) 365
TatI WGTACW 1 cut(s) 85
TauI GCSGC 5 cut(s) 42, 70, 155, 165, 246
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 3 cut(s) 118, 241, 297
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 2 cut(s) 226, 266
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 416
TspRI CASTG 3 cut(s) 118, 241, 297
XceI RCATGY 2 cut(s) 111, 337
XhoI CTCGAG 1 cut(s) 380
XspI CTAG 1 cut(s) 216
ZraI GACGTC 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.