AT5G09620

Octicosapeptide Phox Bem1p

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002525
Physical Location & Seq
Reverse (-)
2983448 .. 2985760
2313 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G09620.2

Sequence Viewer

Length: 1596 bp
ATGGACAAGTTCTCGTACAATTCGTATCCAGATTCAGCTGAATCGTCGCCAAGATCTCGCGATGTCGAATTTGAAAATCCGTCGCCATGGGAGGACCAGCAGCAGCAGAACTACAAGGTGAAGCTCATGTGCAGCTATGGCGGCAAGATCCAGCCTCGTCCACACGATAACCAGCTTACTTATGTAAACGGCGATACCAAAATCATGTCGGTCGATCGTGGTATCAGATTTCCGGCTTTAGTATCGAAGCTCTCCGCCGTCTGCAGCGGTGGTGGTGATGGAGGAGAAATCTCGTTCAAGTATCAGCTTCCAGGTGAAGATCTAGATGCGTTGATTTCGGTGACTAATGATGAGGATCTGGAGCACATGATGCATGAGTACGATCGGTTGCTTCGTTTGTCTACTAAACCAGCTAGGATGCGTTTGTTTCTCTTCCCGTCTTCTCCCATTTCCGGCGGATTTGGCTCCGAAGGTTCGACTAAATCGGATCGGGATACGCTTAATCCAATCCCTAGCCGACCTGAATCGGAGAAATCTGTAACCGCTCCTCCGAATAATGCTGATTTCTTGTTTGGATCGGAGAAAGTAGCTCCAATTCCGCCGTCGCCAGTGAAGGTTCCTCAACCGGTACCGGAACCAGTGGTGCTTGAACCGCCGCAGATGTTCGTAGATCAACGGATGTTACAACCGGAACACGGCGTAAATCCGGCGGAGATTCAAAGACAAATCCAGGAATTTCAGATGATTCAAATCAGAGACCAAGAGCAACAAATGCTTCATCAGAATCAGCTACATCAACAACAACAACAACAAGAGGCTATACATCAAAATCAGCTTCATCACCAACAAGAGGTTATACATCAGAATCAGCTGCTTCAACAAGAGGCTATACATCAGAATCAGATGCTTCAACAACAACAACAACAAGAGGCTATGTACAGAAGAAAAACCGAAGACGAAGCCGGAAGATACTTCCCTCCCACATACACTCAAAATCCGGCGCCGGTGACGAATCAACAACCTCCGGTTGGCTACTGGCAAGGAAACACCAACAACAGTAATATTCAGGGGAATATCTACACAACAACGTCACAGAATCTACCGGAGCAACAACAACAACAACAACAAGTATACATGATTCCAGCTCAATCTCAAGCTCCAGGGACATTATACCAAAGCGTCATGAGACCAACGGTACAAGGAAACCAAGGTTATTACCCATCACCTGTTCAGCGACTTCATCATCCTGATGCATACATGGAACAGCAGAACCAGCCAGGTTACAACGTGGTTCAACCACAGCCAACGTTTTCAGGTGGTCCACAAGTTATGACTAGTGTTGGTCCGCAAGTTATGACTAGTGTCGGTCCTCCAATGGGGTTACAGGAACCTTATTCACAGATGGGGAAGCCTGTGTACTATACGGTGGCTGGAGAAGGCATGATGGTTCAACCGCCACCAGCCCAGCCTCAGCAGCAGCAGCAGCAGTACCAGGGAATGGGTCAACCGGTTAGTGGCATGACCGATCTCAGAACCGGACCGGATGGGAAAGTGGCGGTTAACATGGCTGCACCACAAGTTTCAGATTCGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1

Protein Analysis

531

Amino Acids

59.66

Weight (kDa)

5.2

Isoelectric Point (pI)

61.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1 PF00564 55 - 146 5.6e-18 PB1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 628
AccB1I GGYRCC 2 cut(s) 628, 1000
AccB7I CCANNNNNTGG 1 cut(s) 1498
AccBSI CCGCTC 1 cut(s) 545
AccI GTMKAC 2 cut(s) 401, 1131
AccII CGCG 1 cut(s) 60
AclI AACGTT 1 cut(s) 1307
AclWI GGATC 4 cut(s) 142, 363, 495, 583
AcsI RAATTY 2 cut(s) 68, 734
AcyI GRCGYC 1 cut(s) 1001
AfaI GTAC 7 cut(s) 17, 380, 630, 938, 1197, 1418, 1490
AfiI CCNNNNNNNGG 7 cut(s) 452, 695, 850, 1028, 1376, 1498, 1514
AgeI ACCGGT 2 cut(s) 625, 1507
AgsI TTSAA 9 cut(s) 74, 298, 650, 719, 749, 878, 911, 1295, 1451
AhlI ACTAGT 2 cut(s) 1334, 1358
AjnI CCWGG 5 cut(s) 310, 729, 1159, 1276, 1491
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 2 cut(s) 750, 1180
AlwI GGATC 4 cut(s) 142, 363, 495, 583
ApoI RAATTY 2 cut(s) 68, 734
AsiGI ACCGGT 2 cut(s) 625, 1507
Asp718I GGTACC 1 cut(s) 628
AspLEI GCGC 1 cut(s) 1003
AspS9I GGNCC 5 cut(s) 94, 1319, 1343, 1367, 1538
AsuHPI GGTGA 7 cut(s) 130, 287, 326, 352, 833, 1018, 1215
AvaII GGWCC 5 cut(s) 94, 1319, 1343, 1367, 1538
BanI GGYRCC 2 cut(s) 628, 1000
BarI GAAGNNNNNNTAC 2 cut(s) 1400, 1432
BbsI GAAGAC 2 cut(s) 432, 960
Bbv12I GWGCWC 1 cut(s) 366
BbvCI CCTCAGC 1 cut(s) 1470
BccI CCATC 5 cut(s) 272, 1228, 1396, 1438, 1538
BceAI ACGGC 4 cut(s) 205, 242, 586, 712
BciT130I CCWGG 5 cut(s) 312, 731, 1161, 1278, 1493
BciVI GTATCC 2 cut(s) 36, 487
BcoDI GTCTC 2 cut(s) 750, 1180
BcuI ACTAGT 2 cut(s) 1334, 1358
BfaI CTAG 5 cut(s) 323, 414, 513, 1335, 1359
BfmI CTRYAG 1 cut(s) 262
BfoI RGCGCY 1 cut(s) 1004
BfuI GTATCC 2 cut(s) 36, 487
BglII AGATCT 2 cut(s) 53, 319
Bme1390I CCNGG 5 cut(s) 312, 731, 1161, 1278, 1493
Bme18I GGWCC 5 cut(s) 94, 1319, 1343, 1367, 1538
BmgT120I GGNCC 5 cut(s) 94, 1319, 1343, 1367, 1538
BmiI GGNNCC 6 cut(s) 466, 618, 630, 636, 1002, 1389
BmrFI CCNGG 5 cut(s) 312, 731, 1161, 1278, 1493
BmsI GCATC 5 cut(s) 316, 360, 408, 894, 1240
BoxI GACNNNNGTC 1 cut(s) 1361
BpiI GAAGAC 2 cut(s) 432, 960
BpmI CTGGAG 3 cut(s) 380, 1143, 1452
Bpu10I CCTNAGC 1 cut(s) 1470
BpuEI CTTGAG 1 cut(s) 1137
BsaBI GATNNNNATC 2 cut(s) 354, 749
BsaHI GRCGYC 1 cut(s) 1001
BsaI GGTCTC 2 cut(s) 750, 1180
BsaJI CCNNGG 4 cut(s) 86, 1160, 1207, 1492
BsaWI WCCGGW 8 cut(s) 625, 631, 688, 1024, 1102, 1507, 1535, 1540
BsaXI ACNNNNNCTCC 2 cut(s) 532, 562
Bsc4I CCNNNNNNNGG 7 cut(s) 452, 695, 850, 1028, 1376, 1498, 1514
Bse118I RCCGGY 3 cut(s) 625, 1003, 1507
Bse1I ACTGG 3 cut(s) 608, 638, 1040
Bse8I GATNNNNATC 2 cut(s) 354, 749
BseBI CCWGG 5 cut(s) 312, 731, 1161, 1278, 1493
BseDI CCNNGG 4 cut(s) 86, 1160, 1207, 1492
BseGI GGATG 4 cut(s) 423, 684, 1243, 1549
BseJI GATNNNNATC 2 cut(s) 354, 749
BseLI CCNNNNNNNGG 7 cut(s) 452, 695, 850, 1028, 1376, 1498, 1514
BseMII CTCAG 2 cut(s) 1484, 1543
BseNI ACTGG 3 cut(s) 608, 638, 1040
BseRI GAGGAG 2 cut(s) 297, 537
BseYI CCCAGC 1 cut(s) 1464
BsgI GTGCAG 2 cut(s) 151, 1554
Bsh1236I CGCG 1 cut(s) 60
Bsh1285I CGRYCG 3 cut(s) 213, 217, 385
BshNI GGYRCC 2 cut(s) 628, 1000
BshTI ACCGGT 2 cut(s) 625, 1507
BsiEI CGRYCG 3 cut(s) 213, 217, 385
BsiHKAI GWGCWC 1 cut(s) 366
BslFI GGGAC 1 cut(s) 1177
BslI CCNNNNNNNGG 7 cut(s) 452, 695, 850, 1028, 1376, 1498, 1514
BsmAI GTCTC 2 cut(s) 750, 1180
BsmFI GGGAC 1 cut(s) 1177
Bso31I GGTCTC 2 cut(s) 750, 1180
Bsp1286I GDGCHC 1 cut(s) 366
Bsp1407I TGTACA 1 cut(s) 936
Bsp19I CCATGG 1 cut(s) 86
Bsp68I TCGCGA 1 cut(s) 60
BspCNI CTCAG 2 cut(s) 1483, 1542
BspFNI CGCG 1 cut(s) 60
BspHI TCATGA 1 cut(s) 1182
BspLI GGNNCC 6 cut(s) 466, 618, 630, 636, 1002, 1389
BspMAI CTGCAG 1 cut(s) 266
BspPI GGATC 4 cut(s) 142, 363, 495, 583
BspT107I GGYRCC 2 cut(s) 628, 1000
BspTNI GGTCTC 2 cut(s) 750, 1180
BsrBI CCGCTC 1 cut(s) 545
BsrFI RCCGGY 3 cut(s) 625, 1003, 1507
BsrGI TGTACA 1 cut(s) 936
BsrI ACTGG 3 cut(s) 608, 638, 1040
BssAI RCCGGY 3 cut(s) 625, 1003, 1507
BssECI CCNNGG 4 cut(s) 86, 1160, 1207, 1492
BssNAI GTATAC 1 cut(s) 1132
BssNI GRCGYC 1 cut(s) 1001
BssT1I CCWWGG 2 cut(s) 86, 1207
Bst1107I GTATAC 1 cut(s) 1132
Bst2UI CCWGG 5 cut(s) 312, 731, 1161, 1278, 1493
Bst4CI ACNGT 3 cut(s) 1058, 1195, 1426
Bst6I CTCTTC 1 cut(s) 437
BstACI GRCGYC 1 cut(s) 1001
BstAPI GCANNNNNTGC 2 cut(s) 370, 772
BstAUI TGTACA 1 cut(s) 936
BstDEI CTNAG 2 cut(s) 1470, 1529
BstDSI CCRYGG 1 cut(s) 86
BstF5I GGATG 4 cut(s) 423, 684, 1243, 1549
BstFNI CGCG 1 cut(s) 60
BstH2I RGCGCY 1 cut(s) 1004
BstHHI GCGC 1 cut(s) 1003
BstMAI GTCTC 2 cut(s) 750, 1180
BstMCI CGRYCG 3 cut(s) 213, 217, 385
BstNI CCWGG 5 cut(s) 312, 731, 1161, 1278, 1493
BstPAI GACNNNNGTC 1 cut(s) 1361
BstSCI CCNGG 5 cut(s) 310, 729, 1159, 1276, 1491
BstSFI CTRYAG 1 cut(s) 262
BstUI CGCG 1 cut(s) 60
BstV2I GAAGAC 2 cut(s) 432, 960
BstX2I RGATCY 4 cut(s) 53, 147, 319, 355
BstYI RGATCY 4 cut(s) 53, 147, 319, 355
BstZ17I GTATAC 1 cut(s) 1132
BsuI GTATCC 2 cut(s) 36, 487
BtgI CCRYGG 1 cut(s) 86
BtgZI GCGATG 1 cut(s) 75
BtsCI GGATG 4 cut(s) 423, 684, 1243, 1549
BtsIMutI CAGTG 2 cut(s) 615, 645
BtuMI TCGCGA 1 cut(s) 60
CciI TCATGA 1 cut(s) 1182
CfoI GCGC 1 cut(s) 1003
Cfr10I RCCGGY 3 cut(s) 625, 1003, 1507
Cfr13I GGNCC 5 cut(s) 94, 1319, 1343, 1367, 1538
CpoI CGGWCCG 1 cut(s) 1538
CseI GACGC 1 cut(s) 1168
Csp6I GTAC 7 cut(s) 16, 379, 629, 937, 1196, 1417, 1489
CspAI ACCGGT 2 cut(s) 625, 1507
CspI CGGWCCG 1 cut(s) 1538
CviQI GTAC 7 cut(s) 16, 379, 629, 937, 1196, 1417, 1489
DdeI CTNAG 2 cut(s) 1470, 1529
DinI GGCGCC 1 cut(s) 1002
Eam1104I CTCTTC 1 cut(s) 437
EarI CTCTTC 1 cut(s) 437
EciI GGCGGA 4 cut(s) 244, 471, 588, 725
Eco130I CCWWGG 2 cut(s) 86, 1207
Eco31I GGTCTC 2 cut(s) 750, 1180
Eco47I GGWCC 5 cut(s) 94, 1319, 1343, 1367, 1538
EcoRII CCWGG 5 cut(s) 310, 729, 1159, 1276, 1491
EcoT14I CCWWGG 2 cut(s) 86, 1207
EcoT22I ATGCAT 2 cut(s) 375, 1255
EgeI GGCGCC 1 cut(s) 1002
EheI GGCGCC 1 cut(s) 1002
ErhI CCWWGG 2 cut(s) 86, 1207
FaqI GGGAC 1 cut(s) 1177
FblI GTMKAC 2 cut(s) 401, 1131
FokI GGATG 4 cut(s) 430, 691, 1230, 1556
FspBI CTAG 5 cut(s) 323, 414, 513, 1335, 1359
GlaI GCGC 1 cut(s) 1002
GsaI CCCAGC 1 cut(s) 1468
GsuI CTGGAG 3 cut(s) 380, 1143, 1452
HaeII RGCGCY 1 cut(s) 1004
HgaI GACGC 1 cut(s) 1168
HhaI GCGC 1 cut(s) 1003
Hin1I GRCGYC 1 cut(s) 1001
Hin6I GCGC 1 cut(s) 1001
HinP1I GCGC 1 cut(s) 1001
HincII GTYRAC 2 cut(s) 1505, 1561
HindII GTYRAC 2 cut(s) 1505, 1561
HpaI GTTAAC 1 cut(s) 1561
HphI GGTGA 7 cut(s) 130, 287, 326, 352, 833, 1018, 1215
Hpy166II GTNNAC 8 cut(s) 161, 187, 402, 1132, 1322, 1417, 1505, 1561
Hpy188III TCNNGA 7 cut(s) 29, 59, 323, 359, 491, 1183, 1247
Hpy8I GTNNAC 8 cut(s) 161, 187, 402, 1132, 1322, 1417, 1505, 1561
Hpy99I CGWCG 3 cut(s) 49, 85, 607
HpyAV CCTTC 3 cut(s) 464, 607, 1430
HpyCH4III ACNGT 3 cut(s) 1058, 1195, 1426
HpyCH4IV ACGT 3 cut(s) 1088, 1287, 1307
HpyCH4V TGCA 5 cut(s) 132, 264, 373, 1253, 1571
HpyF3I CTNAG 2 cut(s) 1470, 1529
HpySE526I ACGT 3 cut(s) 1088, 1287, 1307
Hsp92I GRCGYC 1 cut(s) 1001
HspAI GCGC 1 cut(s) 1001
KasI GGCGCC 1 cut(s) 1000
KpnI GGTACC 1 cut(s) 632
KspAI GTTAAC 1 cut(s) 1561
LmnI GCTCC 6 cut(s) 361, 470, 550, 595, 1105, 1162
LweI GCATC 5 cut(s) 316, 360, 408, 894, 1240
MaeI CTAG 5 cut(s) 323, 414, 513, 1335, 1359
MaeII ACGT 3 cut(s) 1088, 1287, 1307
MaeIII GTNAC 7 cut(s) 340, 538, 681, 1006, 1089, 1280, 1380
MbiI CCGCTC 1 cut(s) 545
MboII GAAGA 6 cut(s) 329, 424, 432, 954, 965, 978
MflI RGATCY 4 cut(s) 53, 147, 319, 355
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 4 cut(s) 19, 68, 594, 734
Mly113I GGCGCC 1 cut(s) 1001
Mph1103I ATGCAT 2 cut(s) 375, 1255
MseI TTAA 2 cut(s) 501, 1560
MslI CAYNNNNRTG 1 cut(s) 1248
MspA1I CMGCKG 3 cut(s) 38, 267, 871
MspR9I CCNGG 5 cut(s) 312, 731, 1161, 1278, 1493
MvaI CCWGG 5 cut(s) 312, 731, 1161, 1278, 1493
MvnI CGCG 1 cut(s) 60
NarI GGCGCC 1 cut(s) 1001
NcoI CCATGG 1 cut(s) 86
NlaIV GGNNCC 6 cut(s) 466, 618, 630, 636, 1002, 1389
NmuCI GTSAC 3 cut(s) 340, 1006, 1089
NruI TCGCGA 1 cut(s) 60
NsiI ATGCAT 2 cut(s) 375, 1255
PagI TCATGA 1 cut(s) 1182
PcsI WCGNNNNNNNCGW 2 cut(s) 20, 391
PflMI CCANNNNNTGG 1 cut(s) 1498
PfoI TCCNGGA 1 cut(s) 729
PinAI ACCGGT 2 cut(s) 625, 1507
Ple19I CGATCG 2 cut(s) 217, 385
PluTI GGCGCC 1 cut(s) 1004
PshAI GACNNNNGTC 1 cut(s) 1361
Psp1406I AACGTT 1 cut(s) 1307
Psp6I CCWGG 5 cut(s) 310, 729, 1159, 1276, 1491
PspFI CCCAGC 1 cut(s) 1464
PspGI CCWGG 5 cut(s) 310, 729, 1159, 1276, 1491
PspN4I GGNNCC 6 cut(s) 466, 618, 630, 636, 1002, 1389
PspPI GGNCC 5 cut(s) 94, 1319, 1343, 1367, 1538
PstI CTGCAG 1 cut(s) 266
PsuI RGATCY 4 cut(s) 53, 147, 319, 355
PvuI CGATCG 2 cut(s) 217, 385
PvuII CAGCTG 2 cut(s) 38, 871
RruI TCGCGA 1 cut(s) 60
RsaI GTAC 7 cut(s) 17, 380, 630, 938, 1197, 1418, 1490
RsaNI GTAC 7 cut(s) 16, 379, 629, 937, 1196, 1417, 1489
RseI CAYNNNNRTG 1 cut(s) 1248
Rsr2I CGGWCCG 1 cut(s) 1538
RsrII CGGWCCG 1 cut(s) 1538
SaqAI TTAA 2 cut(s) 501, 1560
Sau96I GGNCC 5 cut(s) 94, 1319, 1343, 1367, 1538
ScrFI CCNGG 5 cut(s) 312, 731, 1161, 1278, 1493
SduI GDGCHC 1 cut(s) 366
SfaNI GCATC 5 cut(s) 316, 360, 408, 894, 1240
SfcI CTRYAG 1 cut(s) 262
SfoI GGCGCC 1 cut(s) 1002
SgrAI CRCCGGYG 1 cut(s) 1003
SinI GGWCC 5 cut(s) 94, 1319, 1343, 1367, 1538
SmiMI CAYNNNNRTG 1 cut(s) 1248
SmlI CTYRAG 1 cut(s) 1152
SmoI CTYRAG 1 cut(s) 1152
SpeI ACTAGT 2 cut(s) 1334, 1358
Sse9I AATT 4 cut(s) 19, 68, 594, 734
SspDI GGCGCC 1 cut(s) 1000
SspI AATATT 1 cut(s) 1063
SspMI CTAG 5 cut(s) 323, 414, 513, 1335, 1359
StyD4I CCNGG 5 cut(s) 310, 729, 1159, 1276, 1491
StyI CCWWGG 2 cut(s) 86, 1207
TaaI ACNGT 3 cut(s) 1058, 1195, 1426
TaiI ACGT 3 cut(s) 1091, 1290, 1310
TaqI TCGA 4 cut(s) 66, 213, 245, 476
TaqII GACCGA 3 cut(s) 199, 1355, 1538
TasI AATT 4 cut(s) 19, 68, 594, 734
TatI WGTACW 2 cut(s) 936, 1416
TauI GCSGC 2 cut(s) 144, 658
Tru1I TTAA 2 cut(s) 501, 1560
Tru9I TTAA 2 cut(s) 501, 1560
TscAI CASTG 2 cut(s) 615, 645
TseFI GTSAC 3 cut(s) 340, 1006, 1089
Tsp45I GTSAC 3 cut(s) 340, 1006, 1089
TspDTI ATGAA 3 cut(s) 767, 827, 1229
TspGWI ACGGA 2 cut(s) 69, 691
TspRI CASTG 2 cut(s) 615, 645
Van91I CCANNNNNTGG 1 cut(s) 1498
VpaK11BI GGWCC 5 cut(s) 94, 1319, 1343, 1367, 1538
XapI RAATTY 2 cut(s) 68, 734
XbaI TCTAGA 1 cut(s) 322
XmiI GTMKAC 2 cut(s) 401, 1131
XspI CTAG 5 cut(s) 323, 414, 513, 1335, 1359
Zsp2I ATGCAT 2 cut(s) 375, 1255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.