AT5G64430

Octicosapeptide Phox Bem1p

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002525
Physical Location & Seq
Reverse (-)
25762160 .. 25764420
2261 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G64430.1

Sequence Viewer

Length: 1542 bp
ATGGAGAAATTCTCGTACAACTCTTATCCAGATTCAACCGACTCGTCACCGAGATCTCGTGAGATCGAATTCGATAACCCGCCGCCTCCATGGGATGATCAGAACCAGAACCAGCAGCAACATAGCTACAAGGTGAAGTTTATGTGCAGCTATGGCGGCAAGATTCAGCCACGGCCTCACGATAATCAGCTCACTTACGTAAACGGAGAAACGAAGATTCTTTCCGTTGATCGCGGGATTAGATTCCCTGTTTTAGCTTCCAAACTCTCCACCGTATGCGGCGGCGGTGATGGCGGCGGAGGAGAAGTTACGTTTAAGTATCAGCTTCCGGGAGAAGACTTAGACGCTTTGATCTCGGTTACGAACGATGATGATCTGGAGCATATGATGCACGAGTACGATCGCTTGCTTCGTTTGTCGTCTAAGCCAGCGAGGATGCGTTTGTTTCTCTTCCCGGCTTCTTCTGGATTTGGTTCTCAAAGTTCGACTCAATCGGATCGAGATCGCTTCGTCGAGGCGTTGAACACTGTTCCTAGGCTATCTGAATCGGAGAAATCCGTAACTGCTCCTCCGAATAATGCGGATTTTTTGTTTGGATCGGAGAAAGTTGCAGCTCCGCCGCCGCCACCACCGGCTGAGGTGAAATTACCGGTTCCTGTGGCGTTAGAACCGCCTTTGTTTAACGATCCGCGTGTGATTCAACCGGATCACGTCGTAAATCCGATGGAAATTCAAAGACAAATGCAGGAATTTCAGAGGATGCATATTAGGGATCAAGAACAACAACAACAACAGGAAGCTGTATACAGAAGGAAGAGTAACGAAGACGGTTTAATAGAAACCGGAGGTGGATACTTCTCTCCACCGTACATACAAAATCCTGCGCCACCACCGCCACAGCAGACGATTCCTCAAACGAATCCGCAAGCTCCTCCGATGACGACTTTCTGGCAAGGAAACCACAATCCAGGAGTCGTATTTCCAACAACCACACATGGATTAGGATTACCAGAGCAACCAGTTTACATGATCCCATCTCCATCTCCATCTCCGGTGTACCACGCGCCACCACCACCGCAACCGCAAGGTGTCATCAGACCAATACTTACAGGACAAGTAAACCAAGGCGGCTACTATCCTCAGGTACAGAGAGTGGCTTCAGATACTTACAGAGAACCACACCAATCACCGTACAACGTGGCTCAGCCACTTCAGGCACCTATAGGAACAAAAGCAGCACAACAACAACAACCTCCTCCTCCTCAGCCTTTTACCTCTGGTCCTCCACCACCGCAATACACCGCAGTACCACCGCCACGACAAGTAGTAGGATTACCAGATACATCAGCGTATACTCAGGTGACTTACACTGGAGGAATGGGGAAACAAGTTTATTACACGGAGGCTCCACCGCCGCAGTACCATGGAGTTGGCTTACCTGTAACTGGTATGAGTGAATTGAGAACTGGACCGGACGGGAAGCTTGTTGCTATGAACATGGCACCTAAAGTTTCATCTCAGAGTTCAGATTCGGCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1

Protein Analysis

513

Amino Acids

56.44

Weight (kDa)

5.6

Isoelectric Point (pI)

65.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1 PF00564 60 - 152 1.1e-18 PB1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1216, 1501
AccI GTMKAC 2 cut(s) 804, 1352
AccII CGCG 3 cut(s) 234, 691, 1064
AclWI GGATC 6 cut(s) 504, 604, 680, 714, 780, 1024
AcsI RAATTY 4 cut(s) 8, 68, 729, 749
AcuI CTGAAG 2 cut(s) 1143, 1196
AfaI GTAC 8 cut(s) 17, 398, 869, 1058, 1146, 1193, 1308, 1421
AfiI CCNNNNNNNGG 1 cut(s) 1445
AgeI ACCGGT 1 cut(s) 649
AgsI TTSAA 4 cut(s) 36, 523, 701, 734
AjiI CACGTC 1 cut(s) 712
AjnI CCWGG 1 cut(s) 967
AluBI AGCT 9 cut(s) 126, 150, 190, 257, 325, 614, 800, 929, 1483
AluI AGCT 9 cut(s) 126, 150, 190, 257, 325, 614, 800, 929, 1483
AlwI GGATC 6 cut(s) 504, 604, 680, 714, 780, 1024
AoxI GGCC 1 cut(s) 173
ApeKI GCWGC 4 cut(s) 115, 147, 611, 1235
ApoI RAATTY 4 cut(s) 8, 68, 729, 749
AsiGI ACCGGT 1 cut(s) 649
AspA2I CCTAGG 1 cut(s) 533
AspLEI GCGC 2 cut(s) 886, 1066
AspS9I GGNCC 2 cut(s) 1280, 1469
AsuC2I CCSGG 2 cut(s) 330, 455
AsuHPI GGTGA 6 cut(s) 39, 145, 299, 652, 1179, 1372
AvaII GGWCC 2 cut(s) 1280, 1469
AvrII CCTAGG 1 cut(s) 533
AxyI CCTNAGG 1 cut(s) 1140
BaeI ACNNNNGTAYC 2 cut(s) 1290, 1323
BanI GGYRCC 2 cut(s) 1216, 1501
BauI CACGAG 2 cut(s) 57, 392
BbsI GAAGAC 2 cut(s) 342, 831
BbvCI CCTCAGC 2 cut(s) 636, 1263
BbvI GCAGC 4 cut(s) 127, 159, 623, 1247
BccI CCATC 5 cut(s) 284, 718, 1042, 1048, 1054
BceAI ACGGC 1 cut(s) 188
BciT130I CCWGG 1 cut(s) 969
BciVI GTATCC 1 cut(s) 845
BclI TGATCA 1 cut(s) 97
BcnI CCSGG 2 cut(s) 330, 455
BfaI CTAG 1 cut(s) 534
BfmI CTRYAG 1 cut(s) 1221
BfuI GTATCC 1 cut(s) 845
BglII AGATCT 1 cut(s) 53
BlnI CCTAGG 1 cut(s) 533
BlpI GCTNAGC 1 cut(s) 1203
Bme1390I CCNGG 3 cut(s) 330, 455, 969
Bme18I GGWCC 2 cut(s) 1280, 1469
BmgBI CACGTC 1 cut(s) 712
BmgT120I GGNCC 2 cut(s) 1280, 1469
BmiI GGNNCC 4 cut(s) 654, 1218, 1407, 1503
BmrFI CCNGG 3 cut(s) 330, 455, 969
BmsI GCATC 3 cut(s) 378, 426, 750
BpiI GAAGAC 2 cut(s) 342, 831
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 2 cut(s) 398, 1392
Bpu10I CCTNAGC 2 cut(s) 636, 1263
Bpu1102I GCTNAGC 1 cut(s) 1203
BpuMI CCSGG 2 cut(s) 330, 455
BsaAI YACGTR 1 cut(s) 199
BsaBI GATNNNNATC 2 cut(s) 372, 501
BsaJI CCNNGG 5 cut(s) 89, 170, 533, 1123, 1423
BsaWI WCCGGW 5 cut(s) 649, 703, 842, 1051, 1471
BsaXI ACNNNNNCTCC 6 cut(s) 291, 321, 553, 583, 1390, 1420
Bsc4I CCNNNNNNNGG 1 cut(s) 1445
Bse118I RCCGGY 2 cut(s) 631, 649
Bse1I ACTGG 4 cut(s) 1019, 1375, 1450, 1471
Bse21I CCTNAGG 1 cut(s) 1140
Bse8I GATNNNNATC 2 cut(s) 372, 501
BseBI CCWGG 1 cut(s) 969
BseDI CCNNGG 5 cut(s) 89, 170, 533, 1123, 1423
BseGI GGATG 3 cut(s) 100, 441, 765
BseJI GATNNNNATC 2 cut(s) 372, 501
BseLI CCNNNNNNNGG 1 cut(s) 1445
BseMII CTCAG 6 cut(s) 627, 1154, 1217, 1277, 1370, 1532
BseNI ACTGG 4 cut(s) 1019, 1375, 1450, 1471
BseRI GAGGAG 6 cut(s) 315, 558, 921, 1245, 1248, 1251
BseXI GCAGC 4 cut(s) 127, 159, 623, 1247
BsgI GTGCAG 1 cut(s) 166
Bsh1236I CGCG 3 cut(s) 234, 691, 1064
Bsh1285I CGRYCG 1 cut(s) 403
BshFI GGCC 1 cut(s) 175
BshNI GGYRCC 2 cut(s) 1216, 1501
BshTI ACCGGT 1 cut(s) 649
BsiEI CGRYCG 1 cut(s) 403
BsiSI CCGG 8 cut(s) 329, 455, 632, 650, 704, 843, 1052, 1472
BslI CCNNNNNNNGG 1 cut(s) 1445
BsnI GGCC 1 cut(s) 175
Bsp1720I GCTNAGC 1 cut(s) 1203
Bsp19I CCATGG 2 cut(s) 89, 1423
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 6 cut(s) 628, 1153, 1216, 1276, 1369, 1531
BspFNI CGCG 3 cut(s) 234, 691, 1064
BspLI GGNNCC 4 cut(s) 654, 1218, 1407, 1503
BspPI GGATC 6 cut(s) 504, 604, 680, 714, 780, 1024
BspT107I GGYRCC 2 cut(s) 1216, 1501
BsrFI RCCGGY 2 cut(s) 631, 649
BsrI ACTGG 4 cut(s) 1019, 1375, 1450, 1471
BssAI RCCGGY 2 cut(s) 631, 649
BssECI CCNNGG 5 cut(s) 89, 170, 533, 1123, 1423
BssNAI GTATAC 2 cut(s) 805, 1353
BssSI CACGAG 2 cut(s) 57, 392
BssT1I CCWWGG 4 cut(s) 89, 533, 1123, 1423
Bst1107I GTATAC 2 cut(s) 805, 1353
Bst2BI CACGAG 2 cut(s) 57, 392
Bst2UI CCWGG 1 cut(s) 969
Bst4CI ACNGT 5 cut(s) 274, 529, 830, 867, 1191
Bst6I CTCTTC 2 cut(s) 455, 809
BstAPI GCANNNNNTGC 1 cut(s) 388
BstBAI YACGTR 1 cut(s) 199
BstC8I GCNNGC 3 cut(s) 407, 429, 927
BstDEI CTNAG 8 cut(s) 340, 423, 636, 1140, 1203, 1263, 1356, 1518
BstDSI CCRYGG 3 cut(s) 89, 170, 1423
BstF5I GGATG 3 cut(s) 100, 441, 765
BstFNI CGCG 3 cut(s) 234, 691, 1064
BstHHI GCGC 2 cut(s) 886, 1066
BstMCI CGRYCG 1 cut(s) 403
BstMWI GCNNNNNNNGC 5 cut(s) 153, 156, 291, 388, 892
BstNI CCWGG 1 cut(s) 969
BstSCI CCNGG 3 cut(s) 328, 453, 967
BstSFI CTRYAG 1 cut(s) 1221
BstSNI TACGTA 1 cut(s) 199
BstUI CGCG 3 cut(s) 234, 691, 1064
BstV1I GCAGC 4 cut(s) 127, 159, 623, 1247
BstV2I GAAGAC 2 cut(s) 342, 831
BstX2I RGATCY 1 cut(s) 53
BstXI CCANNNNNNTGG 1 cut(s) 1430
BstYI RGATCY 1 cut(s) 53
BstZ17I GTATAC 2 cut(s) 805, 1353
Bsu36I CCTNAGG 1 cut(s) 1140
BsuI GTATCC 1 cut(s) 845
BsuRI GGCC 1 cut(s) 175
BtgI CCRYGG 3 cut(s) 89, 170, 1423
BtrI CACGTC 1 cut(s) 712
BtsCI GGATG 3 cut(s) 100, 441, 765
BtsIMutI CAGTG 2 cut(s) 525, 1368
Cac8I GCNNGC 3 cut(s) 407, 429, 927
CfoI GCGC 2 cut(s) 886, 1066
Cfr10I RCCGGY 2 cut(s) 631, 649
Cfr13I GGNCC 2 cut(s) 1280, 1469
CseI GACGC 1 cut(s) 353
Csp6I GTAC 8 cut(s) 16, 397, 868, 1057, 1145, 1192, 1307, 1420
CspAI ACCGGT 1 cut(s) 649
CviAII CATG 5 cut(s) 90, 995, 1027, 1424, 1498
CviQI GTAC 8 cut(s) 16, 397, 868, 1057, 1145, 1192, 1307, 1420
DdeI CTNAG 8 cut(s) 340, 423, 636, 1140, 1203, 1263, 1356, 1518
Eam1104I CTCTTC 2 cut(s) 455, 809
EarI CTCTTC 2 cut(s) 455, 809
EciI GGCGGA 2 cut(s) 312, 606
Eco105I TACGTA 1 cut(s) 199
Eco130I CCWWGG 4 cut(s) 89, 533, 1123, 1423
Eco47I GGWCC 2 cut(s) 1280, 1469
Eco57I CTGAAG 2 cut(s) 1143, 1196
Eco81I CCTNAGG 1 cut(s) 1140
EcoRI GAATTC 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 967
EcoT14I CCWWGG 4 cut(s) 89, 533, 1123, 1423
EcoT22I ATGCAT 1 cut(s) 765
ErhI CCWWGG 4 cut(s) 89, 533, 1123, 1423
FaeI CATG 5 cut(s) 93, 998, 1030, 1427, 1501
FatI CATG 5 cut(s) 89, 994, 1026, 1423, 1497
FauI CCCGC 2 cut(s) 87, 227
FauNDI CATATG 1 cut(s) 384
FbaI TGATCA 1 cut(s) 97
FblI GTMKAC 2 cut(s) 804, 1352
FokI GGATG 3 cut(s) 107, 448, 772
FspBI CTAG 1 cut(s) 534
GlaI GCGC 2 cut(s) 885, 1065
GsuI CTGGAG 2 cut(s) 398, 1392
HaeIII GGCC 1 cut(s) 175
HapII CCGG 8 cut(s) 329, 455, 632, 650, 704, 843, 1052, 1472
HgaI GACGC 1 cut(s) 353
HhaI GCGC 2 cut(s) 886, 1066
Hin1II CATG 5 cut(s) 93, 998, 1030, 1427, 1501
Hin6I GCGC 2 cut(s) 884, 1064
HinP1I GCGC 2 cut(s) 884, 1064
HindIII AAGCTT 1 cut(s) 1481
HpaII CCGG 8 cut(s) 329, 455, 632, 650, 704, 843, 1052, 1472
HphI GGTGA 6 cut(s) 39, 145, 299, 652, 1179, 1372
Hpy166II GTNNAC 6 cut(s) 202, 805, 1024, 1057, 1120, 1353
Hpy188III TCNNGA 7 cut(s) 29, 59, 179, 377, 465, 500, 776
Hpy8I GTNNAC 6 cut(s) 202, 805, 1024, 1057, 1120, 1353
Hpy99I CGWCG 2 cut(s) 515, 716
HpyAV CCTTC 1 cut(s) 804
HpyCH4III ACNGT 5 cut(s) 274, 529, 830, 867, 1191
HpyCH4IV ACGT 4 cut(s) 198, 311, 711, 1197
HpyCH4V TGCA 5 cut(s) 147, 391, 611, 745, 763
HpyF10VI GCNNNNNNNGC 5 cut(s) 153, 156, 291, 388, 892
HpyF3I CTNAG 8 cut(s) 340, 423, 636, 1140, 1203, 1263, 1356, 1518
HpySE526I ACGT 4 cut(s) 198, 311, 711, 1197
Hsp92II CATG 5 cut(s) 93, 998, 1030, 1427, 1501
HspAI GCGC 2 cut(s) 884, 1064
Ksp22I TGATCA 1 cut(s) 97
LmnI GCTCC 5 cut(s) 379, 571, 619, 934, 1411
Lsp1109I GCAGC 4 cut(s) 127, 159, 623, 1247
LweI GCATC 3 cut(s) 378, 426, 750
MaeI CTAG 1 cut(s) 534
MaeII ACGT 4 cut(s) 198, 311, 711, 1197
MaeIII GTNAC 7 cut(s) 45, 307, 358, 559, 818, 1360, 1441
MboII GAAGA 6 cut(s) 226, 347, 442, 453, 826, 836
MflI RGATCY 1 cut(s) 53
MluCI AATT 6 cut(s) 8, 68, 644, 729, 749, 1457
MlyI GAGTC 3 cut(s) 35, 481, 981
MmeI TCCRAC 1 cut(s) 1007
Mph1103I ATGCAT 1 cut(s) 765
MseI TTAA 3 cut(s) 315, 681, 833
MspI CCGG 8 cut(s) 329, 455, 632, 650, 704, 843, 1052, 1472
MspR9I CCNGG 3 cut(s) 330, 455, 969
MvaI CCWGG 1 cut(s) 969
MvnI CGCG 3 cut(s) 234, 691, 1064
MwoI GCNNNNNNNGC 5 cut(s) 153, 156, 291, 388, 892
NciI CCSGG 2 cut(s) 330, 455
NcoI CCATGG 2 cut(s) 89, 1423
NdeI CATATG 1 cut(s) 384
NlaIII CATG 5 cut(s) 93, 998, 1030, 1427, 1501
NlaIV GGNNCC 4 cut(s) 654, 1218, 1407, 1503
NmuCI GTSAC 2 cut(s) 45, 1360
NsiI ATGCAT 1 cut(s) 765
PcsI WCGNNNNNNNCGW 1 cut(s) 409
PfeI GAWTC 9 cut(s) 32, 163, 217, 243, 545, 697, 907, 919, 1529
PfoI TCCNGGA 2 cut(s) 328, 967
PinAI ACCGGT 1 cut(s) 649
Ple19I CGATCG 1 cut(s) 403
PleI GAGTC 3 cut(s) 35, 481, 980
PpsI GAGTC 3 cut(s) 35, 481, 980
Ppu21I YACGTR 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 967
PspGI CCWGG 1 cut(s) 967
PspN4I GGNNCC 4 cut(s) 654, 1218, 1407, 1503
PspPI GGNCC 2 cut(s) 1280, 1469
PsuI RGATCY 1 cut(s) 53
PvuI CGATCG 1 cut(s) 403
RsaI GTAC 8 cut(s) 17, 398, 869, 1058, 1146, 1193, 1308, 1421
RsaNI GTAC 8 cut(s) 16, 397, 868, 1057, 1145, 1192, 1307, 1420
SaqAI TTAA 3 cut(s) 315, 681, 833
Sau96I GGNCC 2 cut(s) 1280, 1469
SchI GAGTC 3 cut(s) 35, 481, 981
ScrFI CCNGG 3 cut(s) 330, 455, 969
SfaNI GCATC 3 cut(s) 378, 426, 750
SfcI CTRYAG 1 cut(s) 1221
SinI GGWCC 2 cut(s) 1280, 1469
SnaBI TACGTA 1 cut(s) 199
Sse9I AATT 6 cut(s) 8, 68, 644, 729, 749, 1457
SspMI CTAG 1 cut(s) 534
StyD4I CCNGG 3 cut(s) 328, 453, 967
StyI CCWWGG 4 cut(s) 89, 533, 1123, 1423
TaaI ACNGT 5 cut(s) 274, 529, 830, 867, 1191
TaiI ACGT 4 cut(s) 201, 314, 714, 1200
TaqI TCGA 5 cut(s) 66, 72, 485, 499, 513
TasI AATT 6 cut(s) 8, 68, 644, 729, 749, 1457
TauI GCSGC 9 cut(s) 85, 159, 282, 285, 297, 622, 625, 1131, 1417
TfiI GAWTC 9 cut(s) 32, 163, 217, 243, 545, 697, 907, 919, 1529
Tru1I TTAA 3 cut(s) 315, 681, 833
Tru9I TTAA 3 cut(s) 315, 681, 833
TscAI CASTG 2 cut(s) 532, 1375
TseFI GTSAC 2 cut(s) 45, 1360
TseI GCWGC 4 cut(s) 115, 147, 611, 1235
Tsp45I GTSAC 2 cut(s) 45, 1360
TspDTI ATGAA 2 cut(s) 1503, 1508
TspGWI ACGGA 4 cut(s) 214, 219, 547, 1415
TspRI CASTG 2 cut(s) 532, 1375
VpaK11BI GGWCC 2 cut(s) 1280, 1469
XapI RAATTY 4 cut(s) 8, 68, 729, 749
XmaJI CCTAGG 1 cut(s) 533
XmiI GTMKAC 2 cut(s) 804, 1352
XspI CTAG 1 cut(s) 534
Zsp2I ATGCAT 1 cut(s) 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.