Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8415439.1

Orthogroup ID

OG0002525

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1319

Gene Structure 1318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8415439.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1318 bp

atggagaactactcctacccggactcccgcgagtcgtccccacgctcccgcgaaatcgactgcgacactccctcctgggacgatcagcctccctcctccgccgccgccgcctccgccgccaccacctacaaggtcaagctcatgtgcagctacggcggcaaaatccagccccggccccacgacaaccagctcgcctacgtcggcggcgacaccaaaatcctcgccgtcgatcgcagcatcaagctctccgccttcatttccaagctctcctccctctgcgaaacccccgacggcgccgtctgcttcaagtaccagctccccggcgaggatctcgacgccctcatctccgtcaccaacgacgaggacctcgaccacatgatgatcgagtacgaccgcctctaccgcgcctccgctaagcccgcgcgtctcaggctcttcctcttcccgatcaacccttccgctccggccagcttcggctccaacgagtccaagtccgagcgccagtggttcgtcgacgccttgaattccgtgcagatccagtccccggaaggctcctctcccaccgctccggtctccgcctcctccaccaaccccgatttcctcttcggattcgacaagggatacgccgccgccgccgccgctcccgtcgcgaaattgcctgattccgtcacgcctccgactgttcctgattcgcttgtgaagaacgcgctcgccgccggaccggaattggtctcggagccgacgctgtctcaattcgagattcagaggcagattcaggagctacacagaatgcaaattgctgccggtcacgagccgactatctatcagaggaaaaacgatgaggttccgaaccctcgggcttacacagctgattattactctcagaagcttccagaaaacatagctgctccggcgccaccgggagccgctcctgttccaatgccggcacacatgcaatttccgacttcttatatgccggaaaggcacataaacactggaagttatcaggtggcggcggctcccggtggaggcgagcagcctgtgtacctcatttccacaccagctggcgtataccaggctccggctcatagaccggccactggaccagtcgggcaggcttactatggtgtgccgcagagaatggttcccgaggtgtaccgtgacgcacaggcatacaatacggcagtggcagctcagcagcagcagcaacaacagcagcagcagcagcaagcaaaggtggctgcttacagtgaagggtttacacaagtgggttatgacaattccgggaggcaagtgtactacactacagccggaggcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1

Protein Analysis

439

Amino Acids

47.59

Weight (kDa)

5.18

Isoelectric Point (pI)

50.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09620 AT5G09620 AT5G64430
fragaria_vesca	FvH4_2g11130 FvH4_5g33880 FvH4_5g33880
malus_domestica	MD05G1050100.v1.1 MD08G1208700.v1.1 MD10G1057400.v1.1 MD15G1392800.v1.1 MD17G1160300.v1.1
prunus_persica	Prupe.1G540000_v2.0.a1 Prupe.1G540000_v2.0.a1 Prupe.1G540000_v2.0.a1 Prupe.8G076200_v2.0.a1 Prupe.8G076200_v2.0.a1
pyrus_communis	pycom05g04200 pycom08g18010 pycom10g04430 pycom15g35330
rosa_chinensis	RchiOBHm_Chr6g0269391 RchiOBHm_Chr7g0233221
rosa_laevigata	RLG00000001285 RLG00000013852
rosa_multiflora	Rmu_co8262419.1_g000001 Rmu_co8415439.1_g000001 Rmu_ssc0000291.1_g000014
rosa_roxburghii	Rroxscaffold_3G00227470 Rroxscaffold_7G00198740
rosa_rugosa	Rorug06G0047400 Rorug07G0279600
rosa_samantha	Rh6AG167900 Rh6BG173400 Rh6CG167400 Rh6DG159300 Rh7AG435300 Rh7BG407800 Rh7CG454300 Rh7DG423300
rosa_wichuraiana	Rw6G014440 Rw7G035810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	296
AccB1I	GGYRCC	2 cut(s)	293, 913
AccBSI	CCGCTC	4 cut(s)	461, 566, 641, 929
AccI	GTMKAC	2 cut(s)	513, 1071
AccII	CGCG	7 cut(s)	30, 51, 405, 422, 424, 650, 707
AclWI	GGATC	2 cut(s)	336, 529
AcoI	YGGCCR	2 cut(s)	465, 1095
AcsI	RAATTY	1 cut(s)	523
AcyI	GRCGYC	4 cut(s)	294, 336, 516, 914
AfaI	GTAC	5 cut(s)	311, 389, 1046, 1157, 1298
AfiI	CCNNNNNNNGG	5 cut(s)	325, 544, 1028, 1081, 1100
AgsI	TTSAA	2 cut(s)	307, 523
AjnI	CCWGG	2 cut(s)	74, 1074
AjuI	GAANNNNNNNTTGG	2 cut(s)	581, 613
Alw26I	GTCTC	4 cut(s)	431, 577, 736, 753
AlwI	GGATC	2 cut(s)	336, 529
Ama87I	CYCGRG	2 cut(s)	855, 1148
AoxI	GGCC	3 cut(s)	173, 465, 1095
ApoI	RAATTY	1 cut(s)	523
AspLEI	GCGC	6 cut(s)	296, 407, 424, 501, 709, 916
AspS9I	GGNCC	4 cut(s)	174, 364, 719, 1103
AsuC2I	CCSGG	7 cut(s)	20, 172, 321, 545, 921, 1023, 1285
AsuHPI	GGTGA	1 cut(s)	343
AvaI	CYCGRG	2 cut(s)	855, 1148
AvaII	GGWCC	3 cut(s)	364, 719, 1103
BanI	GGYRCC	2 cut(s)	293, 913
BauI	CACGAG	1 cut(s)	809
BceAI	ACGGC	5 cut(s)	169, 209, 281, 307, 1197
BciT130I	CCWGG	2 cut(s)	76, 1076
BciVI	GTATCC	1 cut(s)	614
BcnI	CCSGG	7 cut(s)	20, 172, 321, 545, 921, 1023, 1285
BcoDI	GTCTC	4 cut(s)	431, 577, 736, 753
BfmI	CTRYAG	1 cut(s)	1305
BfoI	RGCGCY	3 cut(s)	297, 502, 917
BfuI	GTATCC	1 cut(s)	614
BglI	GCCNNNNNGGC	1 cut(s)	982
BlpI	GCTNAGC	2 cut(s)	414, 1194
Bme1390I	CCNGG	9 cut(s)	20, 76, 172, 321, 545, 921, 1023, 1076, 1285
Bme18I	GGWCC	3 cut(s)	364, 719, 1103
BmeT110I	CYCGRG	2 cut(s)	855, 1148
BmgT120I	GGNCC	4 cut(s)	174, 364, 719, 1103
BmrFI	CCNGG	9 cut(s)	20, 76, 172, 321, 545, 921, 1023, 1076, 1285
BmsI	GCATC	1 cut(s)	246
BplI	GAGNNNNNCTC	1 cut(s)	28
Bpu1102I	GCTNAGC	2 cut(s)	414, 1194
BpuMI	CCSGG	7 cut(s)	20, 172, 321, 545, 921, 1023, 1285
BsaHI	GRCGYC	4 cut(s)	294, 336, 516, 914
BsaI	GGTCTC	2 cut(s)	577, 736
BsaJI	CCNNGG	6 cut(s)	75, 170, 319, 543, 854, 1149
BsaWI	WCCGGW	2 cut(s)	568, 721
BsaXI	ACNNNNNCTCC	6 cut(s)	8, 38, 56, 86, 392, 422
Bsc4I	CCNNNNNNNGG	5 cut(s)	325, 544, 1028, 1081, 1100
Bse118I	RCCGGY	3 cut(s)	803, 943, 1093
Bse1I	ACTGG	5 cut(s)	502, 538, 1000, 1105, 1106
BseBI	CCWGG	2 cut(s)	76, 1076
BseDI	CCNNGG	6 cut(s)	75, 170, 319, 543, 854, 1149
BseLI	CCNNNNNNNGG	5 cut(s)	325, 544, 1028, 1081, 1100
BseMII	CTCAG	3 cut(s)	442, 896, 1208
BseNI	ACTGG	5 cut(s)	502, 538, 1000, 1105, 1106
BseRI	GAGGAG	4 cut(s)	85, 259, 544, 571
BsgI	GTGCAG	2 cut(s)	166, 551
Bsh1236I	CGCG	7 cut(s)	30, 51, 405, 422, 424, 650, 707
Bsh1285I	CGRYCG	2 cut(s)	232, 394
BshFI	GGCC	3 cut(s)	175, 467, 1097
BshNI	GGYRCC	2 cut(s)	293, 913
BsiEI	CGRYCG	2 cut(s)	232, 394
BsiHKCI	CYCGRG	2 cut(s)	855, 1148
BslFI	GGGAC	3 cut(s)	22, 92, 526
BslI	CCNNNNNNNGG	5 cut(s)	325, 544, 1028, 1081, 1100
BsmAI	GTCTC	4 cut(s)	431, 577, 736, 753
BsmBI	CGTCTC	1 cut(s)	431
BsmFI	GGGAC	3 cut(s)	22, 92, 526
BsmI	GAATGC	1 cut(s)	795
BsnI	GGCC	3 cut(s)	175, 467, 1097
Bso31I	GGTCTC	2 cut(s)	577, 736
BsoBI	CYCGRG	2 cut(s)	855, 1148
Bsp143I	GATC	6 cut(s)	82, 229, 328, 381, 447, 534
Bsp1720I	GCTNAGC	2 cut(s)	414, 1194
Bsp68I	TCGCGA	1 cut(s)	650
BspANI	GGCC	3 cut(s)	175, 467, 1097
BspCNI	CTCAG	3 cut(s)	441, 895, 1207
BspFNI	CGCG	7 cut(s)	30, 51, 405, 422, 424, 650, 707
BspPI	GGATC	2 cut(s)	336, 529
BspQI	GCTCTTC	1 cut(s)	440
BspT107I	GGYRCC	2 cut(s)	293, 913
BspTNI	GGTCTC	2 cut(s)	577, 736
BsrBI	CCGCTC	4 cut(s)	461, 566, 641, 929
BsrFI	RCCGGY	3 cut(s)	803, 943, 1093
BsrI	ACTGG	5 cut(s)	502, 538, 1000, 1105, 1106
BssAI	RCCGGY	3 cut(s)	803, 943, 1093
BssECI	CCNNGG	6 cut(s)	75, 170, 319, 543, 854, 1149
BssMI	GATC	6 cut(s)	82, 229, 328, 381, 447, 534
BssNAI	GTATAC	1 cut(s)	1072
BssNI	GRCGYC	4 cut(s)	294, 336, 516, 914
BssSI	CACGAG	1 cut(s)	809
Bst1107I	GTATAC	1 cut(s)	1072
Bst2BI	CACGAG	1 cut(s)	809
Bst2UI	CCWGG	2 cut(s)	76, 1076
Bst4CI	ACNGT	3 cut(s)	682, 1160, 1250
Bst6I	CTCTTC	3 cut(s)	440, 446, 608
BstACI	GRCGYC	4 cut(s)	294, 336, 516, 914
BstC8I	GCNNGC	9 cut(s)	192, 420, 469, 711, 945, 1034, 1066, 1116, 1230
BstDEI	CTNAG	4 cut(s)	414, 428, 882, 1194
BstFNI	CGCG	7 cut(s)	30, 51, 405, 422, 424, 650, 707
BstH2I	RGCGCY	3 cut(s)	297, 502, 917
BstHHI	GCGC	6 cut(s)	296, 407, 424, 501, 709, 916
BstKTI	GATC	6 cut(s)	85, 232, 331, 384, 450, 537
BstMAI	GTCTC	4 cut(s)	431, 577, 736, 753
BstMBI	GATC	6 cut(s)	82, 229, 328, 381, 447, 534
BstMCI	CGRYCG	2 cut(s)	232, 394
BstNI	CCWGG	2 cut(s)	76, 1076
BstNSI	RCATGY	1 cut(s)	955
BstSCI	CCNGG	9 cut(s)	18, 74, 170, 319, 543, 919, 1021, 1074, 1283
BstSFI	CTRYAG	1 cut(s)	1305
BstUI	CGCG	7 cut(s)	30, 51, 405, 422, 424, 650, 707
BstX2I	RGATCY	2 cut(s)	328, 534
BstYI	RGATCY	2 cut(s)	328, 534
BstZ17I	GTATAC	1 cut(s)	1072
BsuI	GTATCC	1 cut(s)	614
BsuRI	GGCC	3 cut(s)	175, 467, 1097
BtsI	GCAGTG	1 cut(s)	1191
BtsIMutI	CAGTG	5 cut(s)	509, 993, 1098, 1191, 1255
BtuMI	TCGCGA	1 cut(s)	650
Cac8I	GCNNGC	9 cut(s)	192, 420, 469, 711, 945, 1034, 1066, 1116, 1230
CfoI	GCGC	6 cut(s)	296, 407, 424, 501, 709, 916
Cfr10I	RCCGGY	3 cut(s)	803, 943, 1093
Cfr13I	GGNCC	4 cut(s)	174, 364, 719, 1103
CpoI	CGGWCCG	1 cut(s)	719
CseI	GACGC	5 cut(s)	344, 413, 524, 751, 1172
Csp6I	GTAC	5 cut(s)	310, 388, 1045, 1156, 1297
CspI	CGGWCCG	1 cut(s)	719
CviAII	CATG	3 cut(s)	142, 376, 952
CviQI	GTAC	5 cut(s)	310, 388, 1045, 1156, 1297
DdeI	CTNAG	4 cut(s)	414, 428, 882, 1194
DinI	GGCGCC	2 cut(s)	295, 915
DpnI	GATC	6 cut(s)	84, 231, 330, 383, 449, 536
DpnII	GATC	6 cut(s)	82, 229, 328, 381, 447, 534
DrdI	GACNNNNNNGTC	1 cut(s)	296
DseDI	GACNNNNNNGTC	1 cut(s)	296
EaeI	YGGCCR	2 cut(s)	465, 1095
Eam1104I	CTCTTC	3 cut(s)	440, 446, 608
EarI	CTCTTC	3 cut(s)	440, 446, 608
EciI	GGCGGA	4 cut(s)	88, 103, 238, 565
Eco31I	GGTCTC	2 cut(s)	577, 736
Eco47I	GGWCC	3 cut(s)	364, 719, 1103
Eco88I	CYCGRG	2 cut(s)	855, 1148
EcoO109I	RGGNCCY	1 cut(s)	364
EcoRI	GAATTC	1 cut(s)	523
EcoRII	CCWGG	2 cut(s)	74, 1074
EgeI	GGCGCC	2 cut(s)	295, 915
EheI	GGCGCC	2 cut(s)	295, 915
Esp3I	CGTCTC	1 cut(s)	431
FaeI	CATG	3 cut(s)	145, 379, 955
FaqI	GGGAC	3 cut(s)	22, 92, 526
FatI	CATG	3 cut(s)	141, 375, 951
FauI	CCCGC	3 cut(s)	35, 56, 427
FblI	GTMKAC	2 cut(s)	513, 1071
GlaI	GCGC	6 cut(s)	295, 406, 423, 500, 708, 915
HaeII	RGCGCY	3 cut(s)	297, 502, 917
HaeIII	GGCC	3 cut(s)	175, 467, 1097
HgaI	GACGC	5 cut(s)	344, 413, 524, 751, 1172
HhaI	GCGC	6 cut(s)	296, 407, 424, 501, 709, 916
Hin1I	GRCGYC	4 cut(s)	294, 336, 516, 914
Hin1II	CATG	3 cut(s)	145, 379, 955
Hin6I	GCGC	6 cut(s)	294, 405, 422, 499, 707, 914
HinP1I	GCGC	6 cut(s)	294, 405, 422, 499, 707, 914
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HindIII	AAGCTT	1 cut(s)	887
HinfI	GANTC	8 cut(s)	23, 32, 485, 609, 662, 689, 760, 772
HphI	GGTGA	1 cut(s)	343
Hpy166II	GTNNAC	6 cut(s)	514, 1045, 1072, 1156, 1260, 1297
Hpy188I	TCNGA	9 cut(s)	496, 608, 678, 736, 765, 828, 849, 885, 963
Hpy188III	TCNNGA	9 cut(s)	332, 445, 649, 686, 757, 776, 809, 893, 1148
Hpy8I	GTNNAC	6 cut(s)	514, 1045, 1072, 1156, 1260, 1297
Hpy99I	CGWCG	9 cut(s)	203, 230, 293, 338, 362, 515, 518, 650, 745
HpyAV	CCTTC	4 cut(s)	262, 465, 542, 1247
HpyCH4III	ACNGT	3 cut(s)	682, 1160, 1250
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	4 cut(s)	147, 532, 793, 955
HpyF3I	CTNAG	4 cut(s)	414, 428, 882, 1194
HpySE526I	ACGT	1 cut(s)	198
Hsp92I	GRCGYC	4 cut(s)	294, 336, 516, 914
Hsp92II	CATG	3 cut(s)	145, 379, 955
HspAI	GCGC	6 cut(s)	294, 405, 422, 499, 707, 914
KasI	GGCGCC	2 cut(s)	293, 913
KroI	GCCGGC	1 cut(s)	943
KroNI	GCCGGC	1 cut(s)	945
Kzo9I	GATC	6 cut(s)	82, 229, 328, 381, 447, 534
LguI	GCTCTTC	1 cut(s)	440
LweI	GCATC	1 cut(s)	246
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	4 cut(s)	349, 667, 806, 1160
MalI	GATC	6 cut(s)	84, 231, 330, 383, 449, 536
MbiI	CCGCTC	4 cut(s)	461, 566, 641, 929
MboI	GATC	6 cut(s)	82, 229, 328, 381, 447, 534
MboII	GAAGA	4 cut(s)	427, 433, 595, 712
MflI	RGATCY	2 cut(s)	328, 534
MluCI	AATT	7 cut(s)	523, 653, 725, 752, 795, 956, 1279
Mly113I	GGCGCC	2 cut(s)	294, 914
MlyI	GAGTC	3 cut(s)	17, 41, 494
MmeI	TCCRAC	3 cut(s)	504, 701, 986
MroNI	GCCGGC	1 cut(s)	943
MspA1I	CMGCKG	2 cut(s)	869, 1064
MspR9I	CCNGG	9 cut(s)	20, 76, 172, 321, 545, 921, 1023, 1076, 1285
Mva1269I	GAATGC	1 cut(s)	795
MvaI	CCWGG	2 cut(s)	76, 1076
MvnI	CGCG	7 cut(s)	30, 51, 405, 422, 424, 650, 707
NaeI	GCCGGC	1 cut(s)	945
NarI	GGCGCC	2 cut(s)	294, 914
NciI	CCSGG	7 cut(s)	20, 172, 321, 545, 921, 1023, 1285
NdeII	GATC	6 cut(s)	82, 229, 328, 381, 447, 534
NgoMIV	GCCGGC	1 cut(s)	943
NlaIII	CATG	3 cut(s)	145, 379, 955
NmuCI	GTSAC	4 cut(s)	349, 667, 806, 1160
NruI	TCGCGA	1 cut(s)	650
NspI	RCATGY	1 cut(s)	955
PciSI	GCTCTTC	1 cut(s)	440
PcsI	WCGNNNNNNNCGW	3 cut(s)	204, 366, 480
PctI	GAATGC	1 cut(s)	795
PdiI	GCCGGC	1 cut(s)	945
PfeI	GAWTC	5 cut(s)	609, 662, 689, 760, 772
PflFI	GACNNNGTC	1 cut(s)	745
PfoI	TCCNGGA	1 cut(s)	1283
Ple19I	CGATCG	1 cut(s)	232
PleI	GAGTC	3 cut(s)	17, 40, 493
PluTI	GGCGCC	2 cut(s)	297, 917
PpsI	GAGTC	3 cut(s)	17, 40, 493
PpuMI	RGGWCCY	1 cut(s)	364
Psp5II	RGGWCCY	1 cut(s)	364
Psp6I	CCWGG	2 cut(s)	74, 1074
PspGI	CCWGG	2 cut(s)	74, 1074
PspPI	GGNCC	4 cut(s)	174, 364, 719, 1103
PspPPI	RGGWCCY	1 cut(s)	364
PsrI	GAACNNNNNNTAC	1 cut(s)	31
PsuI	RGATCY	2 cut(s)	328, 534
PsyI	GACNNNGTC	1 cut(s)	745
PvuI	CGATCG	1 cut(s)	232
PvuII	CAGCTG	2 cut(s)	869, 1064
RruI	TCGCGA	1 cut(s)	650
RsaI	GTAC	5 cut(s)	311, 389, 1046, 1157, 1298
RsaNI	GTAC	5 cut(s)	310, 388, 1045, 1156, 1297
Rsr2I	CGGWCCG	1 cut(s)	719
RsrII	CGGWCCG	1 cut(s)	719
SalI	GTCGAC	1 cut(s)	512
SapI	GCTCTTC	1 cut(s)	440
Sau3AI	GATC	6 cut(s)	82, 229, 328, 381, 447, 534
Sau96I	GGNCC	4 cut(s)	174, 364, 719, 1103
SchI	GAGTC	3 cut(s)	17, 41, 494
ScrFI	CCNGG	9 cut(s)	20, 76, 172, 321, 545, 921, 1023, 1076, 1285
SfaNI	GCATC	1 cut(s)	246
SfcI	CTRYAG	1 cut(s)	1305
SfoI	GGCGCC	2 cut(s)	295, 915
SgrDI	CGTCGACG	1 cut(s)	512
SinI	GGWCC	3 cut(s)	364, 719, 1103
Sse9I	AATT	7 cut(s)	523, 653, 725, 752, 795, 956, 1279
SspDI	GGCGCC	2 cut(s)	293, 913
StyD4I	CCNGG	9 cut(s)	18, 74, 170, 319, 543, 919, 1021, 1074, 1283
TaaI	ACNGT	3 cut(s)	682, 1160, 1250
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	8 cut(s)	57, 228, 333, 369, 384, 513, 612, 756
TasI	AATT	7 cut(s)	523, 653, 725, 752, 795, 956, 1279
TatI	WGTACW	1 cut(s)	1296
TfiI	GAWTC	5 cut(s)	609, 662, 689, 760, 772
TscAI	CASTG	5 cut(s)	509, 1000, 1105, 1191, 1255
TseFI	GTSAC	4 cut(s)	349, 667, 806, 1160
Tsp45I	GTSAC	4 cut(s)	349, 667, 806, 1160
TspDTI	ATGAA	1 cut(s)	244
TspGWI	ACGGA	3 cut(s)	337, 517, 655
TspRI	CASTG	5 cut(s)	509, 1000, 1105, 1191, 1255
Tth111I	GACNNNGTC	1 cut(s)	745
VpaK11BI	GGWCC	3 cut(s)	364, 719, 1103
XapI	RAATTY	1 cut(s)	523
XceI	RCATGY	1 cut(s)	955
XmiI	GTMKAC	2 cut(s)	513, 1071

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.