Rh7BG407800

PB1 domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Forward (+)
45735366 .. 45737928
2563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG407800.1

Sequence Viewer

Length: 1422 bp
ATGGAGAACTACTCCAACCACTCCTACCCTGACTCCCGCGAGTCGTCCCCACGCTCCCGCGAAATCGACTGCGACACTCCCTCCTGGGACGATCAGCCTCCGTCCTCCGCCGCCGCCGCCGCCACCACCTACAAGGTCAAGCTCATGTGCAGCTACGGCGGCAAAATCCAGCCCCGACCCCACGACAACCAGCTCGCCTACGTCGGCGGCGATACCAAAATCCTCGCCGTCGATCGCAGCATCAAGCTCTCCGCCTTCATTTCCAAGCTCTCCTCCCTCTGCGAAACCCCCGACGGCGCCGTCTGCTTCAAGTACCAGCTCCCCGGCGAGGATCTCGACGCCCTCATCTCCGTCACCAACGACGAGGACCTCGACCACATGATGATCGAGTACGACCGCCTCTACCGCGCCTCCGCTAAGCCCGCGCGTCTCAGGCTCTTCCTCTTCCCGATCAACCCTTCCGCTCCGGCCAGCTTCGGCTCCAACGAGTCCAAGTCCGAGCGCCAGTGGTTCGTCGACGCCTTGAATTCCGTTCAGATCCAGTCCCCGGAAGGCTCCTCTCCCACCGCTCCGGTCTCCGCCTCCTCCACCAACCCCGATTTCCTCTTCGGATTCGACAAGGGATACGCCGCCGCCGCCGCTCCCGTCGCGAAATTGCCTGATTCCGTCACGCCTCCGACGGTTCCTGATTCGCTTGTGAAGAACACGCTCGCCGCCGGACCGGAATTGGTCTCGGAGCCGACGCTGTCTCAATTCGAGATTCAGAGGCAGATTCAGGAGCTACACAGAATGCAAATTGCTGCCGGTCACGAGCCGACTATCTATCAGAGGAAAAACGAAGAGGTTCCGAACCCTCGGGCTTACACAGCTGATTATTACTCTCAGAAGCTTCCGGAAAACATAGCTCCGGCGCCACCGGGAGCCGCTCCGGTTCCAATGCCGGCACACATGCAATTTCCGACTTCTTATATGCCGGAAAGGCACATAAACACTGGAAGTTATCAGGTGGCGGCGGCTCCCGGTGGAGGCGAGCAGCCTGTGTACCTCATTTCCACACCAGCTGGTGTATACCAGGCTCCGGCTCATAGACCGGCCACTGGACCAGTCGGGCAGGCTTACTATGGTGTACAGCAGAGAATGGTTCCCGAGGTGTACCGTGACGCACAGGCATACAATACGGCAGTGGCAGCTCAGCAGCAACAACAGCAGCAGCAGCAGCAGCAGCAAGCAAAGGTGGCTGCTTACAGTGAAGGGTTTACACAAGTGGGTTATGACAATTCTGGGAGGCAAGTGTACTACACCACAGCCGGAGGCGCGGTGGCTTCATCTTACCAGAATGTGGCGCCAGTGCCGGTTGCTGTTGATGCAAGACAAGGTGCTGGTGGTGGCGCTTTGAATCAAATTCAAGACGGTGCTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

473

Amino Acids

51.1

Weight (kDa)

5.27

Isoelectric Point (pI)

50.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1 PF00564 61 - 150 6.2e-16 PB1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 299
AccB1I GGYRCC 3 cut(s) 296, 910, 1342
AccB7I CCANNNNNTGG 1 cut(s) 1339
AccBSI CCGCTC 4 cut(s) 464, 569, 641, 926
AccI GTMKAC 2 cut(s) 516, 1068
AccII CGCG 7 cut(s) 39, 60, 408, 425, 427, 650, 1316
AccIII TCCGGA 1 cut(s) 892
AclWI GGATC 2 cut(s) 339, 532
AcoI YGGCCR 2 cut(s) 468, 1092
AcsI RAATTY 2 cut(s) 526, 1401
AcyI GRCGYC 5 cut(s) 297, 339, 519, 911, 1343
AfaI GTAC 6 cut(s) 314, 392, 1043, 1128, 1154, 1295
AfiI CCNNNNNNNGG 6 cut(s) 328, 547, 1025, 1078, 1097, 1339
AgsI TTSAA 4 cut(s) 310, 526, 1396, 1406
AjnI CCWGG 2 cut(s) 83, 1071
AjuI GAANNNNNNNTTGG 2 cut(s) 584, 616
Alw26I GTCTC 4 cut(s) 434, 580, 736, 753
AlwI GGATC 2 cut(s) 339, 532
Ama87I CYCGRG 2 cut(s) 855, 1145
Aor13HI TCCGGA 1 cut(s) 892
AoxI GGCC 2 cut(s) 468, 1092
ApoI RAATTY 2 cut(s) 526, 1401
Asp700I GAANNNNTTC 1 cut(s) 843
AspLEI GCGC 8 cut(s) 299, 410, 427, 504, 913, 1316, 1345, 1391
AspS9I GGNCC 3 cut(s) 367, 719, 1100
AsuC2I CCSGG 4 cut(s) 324, 548, 918, 1020
AsuHPI GGTGA 1 cut(s) 346
AvaI CYCGRG 2 cut(s) 855, 1145
AvaII GGWCC 3 cut(s) 367, 719, 1100
BanI GGYRCC 3 cut(s) 296, 910, 1342
BauI CACGAG 1 cut(s) 809
BceAI ACGGC 5 cut(s) 172, 212, 284, 310, 1194
BciT130I CCWGG 2 cut(s) 85, 1073
BciVI GTATCC 1 cut(s) 617
BcnI CCSGG 4 cut(s) 324, 548, 918, 1020
BcoDI GTCTC 4 cut(s) 434, 580, 736, 753
BfaI CTAG 1 cut(s) 1416
BfoI RGCGCY 5 cut(s) 300, 505, 914, 1346, 1392
BfuI GTATCC 1 cut(s) 617
BglI GCCNNNNNGGC 1 cut(s) 979
BlpI GCTNAGC 2 cut(s) 417, 1191
Bme1390I CCNGG 6 cut(s) 85, 324, 548, 918, 1020, 1073
Bme18I GGWCC 3 cut(s) 367, 719, 1100
BmeT110I CYCGRG 2 cut(s) 855, 1145
BmgT120I GGNCC 3 cut(s) 367, 719, 1100
BmrFI CCNGG 6 cut(s) 85, 324, 548, 918, 1020, 1073
BmsI GCATC 2 cut(s) 249, 1354
BplI GAGNNNNNCTC 1 cut(s) 28
Bpu1102I GCTNAGC 2 cut(s) 417, 1191
BpuMI CCSGG 4 cut(s) 324, 548, 918, 1020
BsaHI GRCGYC 5 cut(s) 297, 339, 519, 911, 1343
BsaI GGTCTC 2 cut(s) 580, 736
BsaJI CCNNGG 5 cut(s) 84, 322, 546, 854, 1146
BsaWI WCCGGW 4 cut(s) 571, 721, 892, 928
BsaXI ACNNNNNCTCC 8 cut(s) 17, 47, 65, 95, 395, 425, 1302, 1332
Bsc4I CCNNNNNNNGG 6 cut(s) 328, 547, 1025, 1078, 1097, 1339
Bse118I RCCGGY 4 cut(s) 803, 940, 1090, 1351
Bse1I ACTGG 6 cut(s) 505, 541, 997, 1102, 1103, 1346
BseAI TCCGGA 1 cut(s) 892
BseBI CCWGG 2 cut(s) 85, 1073
BseDI CCNNGG 5 cut(s) 84, 322, 546, 854, 1146
BseLI CCNNNNNNNGG 6 cut(s) 328, 547, 1025, 1078, 1097, 1339
BseMII CTCAG 3 cut(s) 445, 896, 1205
BseNI ACTGG 6 cut(s) 505, 541, 997, 1102, 1103, 1346
BseRI GAGGAG 3 cut(s) 262, 547, 574
BsgI GTGCAG 1 cut(s) 169
Bsh1236I CGCG 7 cut(s) 39, 60, 408, 425, 427, 650, 1316
Bsh1285I CGRYCG 2 cut(s) 235, 397
BshFI GGCC 2 cut(s) 470, 1094
BshNI GGYRCC 3 cut(s) 296, 910, 1342
BsiEI CGRYCG 2 cut(s) 235, 397
BsiHKCI CYCGRG 2 cut(s) 855, 1145
BslFI GGGAC 3 cut(s) 31, 101, 529
BslI CCNNNNNNNGG 6 cut(s) 328, 547, 1025, 1078, 1097, 1339
BsmAI GTCTC 4 cut(s) 434, 580, 736, 753
BsmBI CGTCTC 1 cut(s) 434
BsmFI GGGAC 3 cut(s) 31, 101, 529
BsmI GAATGC 1 cut(s) 795
BsnI GGCC 2 cut(s) 470, 1094
Bso31I GGTCTC 2 cut(s) 580, 736
BsoBI CYCGRG 2 cut(s) 855, 1145
Bsp13I TCCGGA 1 cut(s) 892
Bsp1407I TGTACA 1 cut(s) 1126
Bsp143I GATC 6 cut(s) 91, 232, 331, 384, 450, 537
Bsp1720I GCTNAGC 2 cut(s) 417, 1191
Bsp68I TCGCGA 1 cut(s) 650
BspANI GGCC 2 cut(s) 470, 1094
BspCNI CTCAG 3 cut(s) 444, 895, 1204
BspEI TCCGGA 1 cut(s) 892
BspFNI CGCG 7 cut(s) 39, 60, 408, 425, 427, 650, 1316
BspPI GGATC 2 cut(s) 339, 532
BspQI GCTCTTC 1 cut(s) 443
BspT107I GGYRCC 3 cut(s) 296, 910, 1342
BspTNI GGTCTC 2 cut(s) 580, 736
BsrBI CCGCTC 4 cut(s) 464, 569, 641, 926
BsrFI RCCGGY 4 cut(s) 803, 940, 1090, 1351
BsrGI TGTACA 1 cut(s) 1126
BsrI ACTGG 6 cut(s) 505, 541, 997, 1102, 1103, 1346
BssAI RCCGGY 4 cut(s) 803, 940, 1090, 1351
BssECI CCNNGG 5 cut(s) 84, 322, 546, 854, 1146
BssMI GATC 6 cut(s) 91, 232, 331, 384, 450, 537
BssNAI GTATAC 1 cut(s) 1069
BssNI GRCGYC 5 cut(s) 297, 339, 519, 911, 1343
BssSI CACGAG 1 cut(s) 809
Bst1107I GTATAC 1 cut(s) 1069
Bst2BI CACGAG 1 cut(s) 809
Bst2UI CCWGG 2 cut(s) 85, 1073
Bst4CI ACNGT 4 cut(s) 682, 1157, 1247, 1412
Bst6I CTCTTC 4 cut(s) 443, 449, 611, 834
BstACI GRCGYC 5 cut(s) 297, 339, 519, 911, 1343
BstAUI TGTACA 1 cut(s) 1126
BstC8I GCNNGC 8 cut(s) 195, 423, 472, 711, 942, 1031, 1113, 1227
BstDEI CTNAG 4 cut(s) 417, 431, 882, 1191
BstFNI CGCG 7 cut(s) 39, 60, 408, 425, 427, 650, 1316
BstH2I RGCGCY 5 cut(s) 300, 505, 914, 1346, 1392
BstHHI GCGC 8 cut(s) 299, 410, 427, 504, 913, 1316, 1345, 1391
BstKTI GATC 6 cut(s) 94, 235, 334, 387, 453, 540
BstMAI GTCTC 4 cut(s) 434, 580, 736, 753
BstMBI GATC 6 cut(s) 91, 232, 331, 384, 450, 537
BstMCI CGRYCG 2 cut(s) 235, 397
BstNI CCWGG 2 cut(s) 85, 1073
BstNSI RCATGY 1 cut(s) 952
BstSCI CCNGG 6 cut(s) 83, 322, 546, 916, 1018, 1071
BstUI CGCG 7 cut(s) 39, 60, 408, 425, 427, 650, 1316
BstX2I RGATCY 2 cut(s) 331, 537
BstYI RGATCY 2 cut(s) 331, 537
BstZ17I GTATAC 1 cut(s) 1069
BsuI GTATCC 1 cut(s) 617
BsuRI GGCC 2 cut(s) 470, 1094
BtsI GCAGTG 1 cut(s) 1188
BtsIMutI CAGTG 6 cut(s) 512, 990, 1095, 1188, 1252, 1353
BtuMI TCGCGA 1 cut(s) 650
Cac8I GCNNGC 8 cut(s) 195, 423, 472, 711, 942, 1031, 1113, 1227
CfoI GCGC 8 cut(s) 299, 410, 427, 504, 913, 1316, 1345, 1391
Cfr10I RCCGGY 4 cut(s) 803, 940, 1090, 1351
Cfr13I GGNCC 3 cut(s) 367, 719, 1100
CpoI CGGWCCG 1 cut(s) 719
CseI GACGC 5 cut(s) 347, 416, 527, 751, 1169
Csp6I GTAC 6 cut(s) 313, 391, 1042, 1127, 1153, 1294
CspI CGGWCCG 1 cut(s) 719
CviAII CATG 3 cut(s) 145, 379, 949
CviQI GTAC 6 cut(s) 313, 391, 1042, 1127, 1153, 1294
DdeI CTNAG 4 cut(s) 417, 431, 882, 1191
DinI GGCGCC 3 cut(s) 298, 912, 1344
DpnI GATC 6 cut(s) 93, 234, 333, 386, 452, 539
DpnII GATC 6 cut(s) 91, 232, 331, 384, 450, 537
DrdI GACNNNNNNGTC 1 cut(s) 299
DseDI GACNNNNNNGTC 1 cut(s) 299
EaeI YGGCCR 2 cut(s) 468, 1092
Eam1104I CTCTTC 4 cut(s) 443, 449, 611, 834
EarI CTCTTC 4 cut(s) 443, 449, 611, 834
EciI GGCGGA 3 cut(s) 97, 241, 568
Eco31I GGTCTC 2 cut(s) 580, 736
Eco47I GGWCC 3 cut(s) 367, 719, 1100
Eco88I CYCGRG 2 cut(s) 855, 1145
EcoO109I RGGNCCY 1 cut(s) 367
EcoRI GAATTC 1 cut(s) 526
EcoRII CCWGG 2 cut(s) 83, 1071
EgeI GGCGCC 3 cut(s) 298, 912, 1344
EheI GGCGCC 3 cut(s) 298, 912, 1344
Esp3I CGTCTC 1 cut(s) 434
FaeI CATG 3 cut(s) 148, 382, 952
FaqI GGGAC 3 cut(s) 31, 101, 529
FatI CATG 3 cut(s) 144, 378, 948
FauI CCCGC 3 cut(s) 44, 65, 430
FblI GTMKAC 2 cut(s) 516, 1068
FspBI CTAG 1 cut(s) 1416
GlaI GCGC 8 cut(s) 298, 409, 426, 503, 912, 1315, 1344, 1390
HaeII RGCGCY 5 cut(s) 300, 505, 914, 1346, 1392
HaeIII GGCC 2 cut(s) 470, 1094
HgaI GACGC 5 cut(s) 347, 416, 527, 751, 1169
HhaI GCGC 8 cut(s) 299, 410, 427, 504, 913, 1316, 1345, 1391
Hin1I GRCGYC 5 cut(s) 297, 339, 519, 911, 1343
Hin1II CATG 3 cut(s) 148, 382, 952
Hin6I GCGC 8 cut(s) 297, 408, 425, 502, 911, 1314, 1343, 1389
HinP1I GCGC 8 cut(s) 297, 408, 425, 502, 911, 1314, 1343, 1389
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HindIII AAGCTT 1 cut(s) 887
HinfI GANTC 9 cut(s) 32, 41, 488, 612, 662, 689, 760, 772, 1396
HphI GGTGA 1 cut(s) 346
Hpy166II GTNNAC 7 cut(s) 517, 1042, 1069, 1127, 1153, 1257, 1294
Hpy8I GTNNAC 7 cut(s) 517, 1042, 1069, 1127, 1153, 1257, 1294
HpyAV CCTTC 4 cut(s) 265, 468, 545, 1244
HpyCH4III ACNGT 4 cut(s) 682, 1157, 1247, 1412
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 4 cut(s) 150, 793, 952, 1367
HpyF3I CTNAG 4 cut(s) 417, 431, 882, 1191
HpySE526I ACGT 1 cut(s) 201
Hsp92I GRCGYC 5 cut(s) 297, 339, 519, 911, 1343
Hsp92II CATG 3 cut(s) 148, 382, 952
HspAI GCGC 8 cut(s) 297, 408, 425, 502, 911, 1314, 1343, 1389
KasI GGCGCC 3 cut(s) 296, 910, 1342
Kpn2I TCCGGA 1 cut(s) 892
KroI GCCGGC 1 cut(s) 940
KroNI GCCGGC 1 cut(s) 942
Kzo9I GATC 6 cut(s) 91, 232, 331, 384, 450, 537
LguI GCTCTTC 1 cut(s) 443
LweI GCATC 2 cut(s) 249, 1354
MaeI CTAG 1 cut(s) 1416
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 4 cut(s) 352, 667, 806, 1157
MalI GATC 6 cut(s) 93, 234, 333, 386, 452, 539
MbiI CCGCTC 4 cut(s) 464, 569, 641, 926
MboI GATC 6 cut(s) 91, 232, 331, 384, 450, 537
MboII GAAGA 5 cut(s) 430, 436, 598, 712, 851
MflI RGATCY 2 cut(s) 331, 537
MluCI AATT 8 cut(s) 526, 653, 725, 752, 795, 953, 1276, 1401
Mly113I GGCGCC 3 cut(s) 297, 911, 1343
MlyI GAGTC 3 cut(s) 26, 50, 497
MmeI TCCRAC 4 cut(s) 39, 507, 701, 983
MroI TCCGGA 1 cut(s) 892
MroNI GCCGGC 1 cut(s) 940
MroXI GAANNNNTTC 1 cut(s) 843
MspA1I CMGCKG 2 cut(s) 869, 1061
MspR9I CCNGG 6 cut(s) 85, 324, 548, 918, 1020, 1073
Mva1269I GAATGC 1 cut(s) 795
MvaI CCWGG 2 cut(s) 85, 1073
MvnI CGCG 7 cut(s) 39, 60, 408, 425, 427, 650, 1316
NaeI GCCGGC 1 cut(s) 942
NarI GGCGCC 3 cut(s) 297, 911, 1343
NciI CCSGG 4 cut(s) 324, 548, 918, 1020
NdeII GATC 6 cut(s) 91, 232, 331, 384, 450, 537
NgoMIV GCCGGC 1 cut(s) 940
NlaIII CATG 3 cut(s) 148, 382, 952
NmuCI GTSAC 4 cut(s) 352, 667, 806, 1157
NruI TCGCGA 1 cut(s) 650
NspI RCATGY 1 cut(s) 952
PciSI GCTCTTC 1 cut(s) 443
PcsI WCGNNNNNNNCGW 3 cut(s) 207, 369, 483
PctI GAATGC 1 cut(s) 795
PdiI GCCGGC 1 cut(s) 942
PdmI GAANNNNTTC 1 cut(s) 843
PfeI GAWTC 6 cut(s) 612, 662, 689, 760, 772, 1396
PflFI GACNNNGTC 1 cut(s) 745
PflMI CCANNNNNTGG 1 cut(s) 1339
Ple19I CGATCG 1 cut(s) 235
PleI GAGTC 3 cut(s) 26, 49, 496
PluTI GGCGCC 3 cut(s) 300, 914, 1346
PpsI GAGTC 3 cut(s) 26, 49, 496
PpuMI RGGWCCY 1 cut(s) 367
Psp5II RGGWCCY 1 cut(s) 367
Psp6I CCWGG 2 cut(s) 83, 1071
PspGI CCWGG 2 cut(s) 83, 1071
PspPI GGNCC 3 cut(s) 367, 719, 1100
PspPPI RGGWCCY 1 cut(s) 367
PsuI RGATCY 2 cut(s) 331, 537
PsyI GACNNNGTC 1 cut(s) 745
PvuI CGATCG 1 cut(s) 235
PvuII CAGCTG 2 cut(s) 869, 1061
RruI TCGCGA 1 cut(s) 650
RsaI GTAC 6 cut(s) 314, 392, 1043, 1128, 1154, 1295
RsaNI GTAC 6 cut(s) 313, 391, 1042, 1127, 1153, 1294
Rsr2I CGGWCCG 1 cut(s) 719
RsrII CGGWCCG 1 cut(s) 719
SalI GTCGAC 1 cut(s) 515
SapI GCTCTTC 1 cut(s) 443
Sau3AI GATC 6 cut(s) 91, 232, 331, 384, 450, 537
Sau96I GGNCC 3 cut(s) 367, 719, 1100
SchI GAGTC 3 cut(s) 26, 50, 497
ScrFI CCNGG 6 cut(s) 85, 324, 548, 918, 1020, 1073
SfaNI GCATC 2 cut(s) 249, 1354
SfoI GGCGCC 3 cut(s) 298, 912, 1344
SgrDI CGTCGACG 1 cut(s) 515
SinI GGWCC 3 cut(s) 367, 719, 1100
Sse9I AATT 8 cut(s) 526, 653, 725, 752, 795, 953, 1276, 1401
SspDI GGCGCC 3 cut(s) 296, 910, 1342
SspMI CTAG 1 cut(s) 1416
StyD4I CCNGG 6 cut(s) 83, 322, 546, 916, 1018, 1071
TaaI ACNGT 4 cut(s) 682, 1157, 1247, 1412
TaiI ACGT 1 cut(s) 204
TaqI TCGA 8 cut(s) 66, 231, 336, 372, 387, 516, 615, 756
TasI AATT 8 cut(s) 526, 653, 725, 752, 795, 953, 1276, 1401
TatI WGTACW 2 cut(s) 1126, 1293
TfiI GAWTC 6 cut(s) 612, 662, 689, 760, 772, 1396
TscAI CASTG 6 cut(s) 512, 997, 1102, 1188, 1252, 1353
TseFI GTSAC 4 cut(s) 352, 667, 806, 1157
Tsp45I GTSAC 4 cut(s) 352, 667, 806, 1157
TspDTI ATGAA 2 cut(s) 247, 1314
TspGWI ACGGA 4 cut(s) 90, 340, 520, 655
TspRI CASTG 6 cut(s) 512, 997, 1102, 1188, 1252, 1353
Tth111I GACNNNGTC 1 cut(s) 745
Van91I CCANNNNNTGG 1 cut(s) 1339
VpaK11BI GGWCC 3 cut(s) 367, 719, 1100
XapI RAATTY 2 cut(s) 526, 1401
XceI RCATGY 1 cut(s) 952
XmiI GTMKAC 2 cut(s) 516, 1068
XmnI GAANNNNTTC 1 cut(s) 843
XspI CTAG 1 cut(s) 1416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.