RLG00000001285

PB1 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002525
Physical Location & Seq
Reverse (-)
13398807 .. 13401349
2543 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001285

Sequence Viewer

Length: 1431 bp
ATGGAGAACTACTCCAACCACTCCTACCCGGACTCCCGCGAGTCGTCCCCACGCTCCCGCGAAATCGACTGCGACACTCCCTCCTGGGACGATCAGCCTCCCTCCTCCGCCGCCGCCGCCGCCGCCACCACCTACAAGGTCAAGCTCATGTGCAGCTACGGCGGCAAAATCCAGCCCCGACCCCACGACAACCAGCTCGCCTACGTCGGCGGCGACACCAAAATCCTCGCCGTCGAGCGCAACATCAAGCTCTCCGCCTTCGTTTCCAAGCTCTCCTCCCTCTGCGAAACCCCCGACGGCGCCGTCTGCTTCAAGTACCAGCTCCCCGGCGAGGATCTCGACGCCCTCATCTCCGTCACCAACGACGAGGACCTCGACCACATGATGATCGAGTACGACCGCCTCTACCGCGCCTCCGCTAAGCCCGCGCGTCTCAGGCTCTTCCTCTTCCCGATCAACCCTTCCGCTCCGGCCAGCTTCGGCTCCAACGAGTCCAAGTCCGAGCGCCAGTGGTTCGTCGACGCCTTGAATTCCGTTCAGATCCAGTCCCCGGAAGGCTCCTCTCCCACCGCTCCGGTCTCCGCCTCCTCCACCAACCCCGATTTCCTCTTCGGATTCGACAAGGGATACGCCGCCGCCGCTCCTCCCGTCGCGAAAATGCCTGATTCCGTCACGCCTCCGACGGTACCTGATTTGCTTGTGAAGAACACGCTCGCCGCCGGACCGGAATTGGTCTCGGAGCCGACGCTGTCTCAATTCGAGATTCAGAGGCAGATTCAGGAGCTACACAGAATGCAAATTGCTGCTGGTCACGAGCCGACTATCTATCAGAGAAAAAACGAAGAGGTTCCGAACCCTCGGGCTTACACAGCTGATTATTACTCTCAGAAGGTTCCAGAAAACATACCTCCGGCGCCACCGGGAGCCGCTCCGGTTCCAGTGCCGGCACACATGCAATTTCCGACTTCTTATATGCCGGAAAGGCATGTAAACACCGGAAGTTATCAGGTGGCAGCGGCTCCCGGCGGAGGCGAGCAGCCTGTGTACCTCATTTCCACACCAGCTGGTGTATACCAGGCTCCGGCTCATAGACCGGCCACTGGACCAGTCGGGCAGGCTTACTATGGTGTACCGCAGAGAATGGTTCCCGAGGTGTACCGTGACGCACAGGCGTACAATACGGCAGTGGCAGCTCAGCAGCAACAACAGCAGCAGCAGCAGCAGCAGCAGCAAGCAAAGGTGGCTGCTTACAGTGAAGGGTTTACACAAGTGGGTTATGACAATTCTGGGAGGCAAGTGTACTACACTACAGCCGGAGGCGCAGTGGCTTCATCTTACCAGACTGTGGCGCCAGTACCGGTTGCTGTTGATGCAAGACAAGGTGGTGGCGGTGGTGGCGCTTTGAATCAAATTCCAGACGGTGGTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1

Protein Analysis

477

Amino Acids

51.31

Weight (kDa)

5.28

Isoelectric Point (pI)

52.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1 PF00564 62 - 151 4.6e-16 PB1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 302
Acc65I GGTACC 1 cut(s) 685
AccB1I GGYRCC 4 cut(s) 299, 685, 913, 1348
AccB7I CCANNNNNTGG 2 cut(s) 1345, 1421
AccBSI CCGCTC 4 cut(s) 467, 572, 641, 929
AccI GTMKAC 2 cut(s) 519, 1071
AccII CGCG 6 cut(s) 39, 60, 411, 428, 430, 653
AclWI GGATC 2 cut(s) 342, 535
AcoI YGGCCR 2 cut(s) 471, 1095
AcsI RAATTY 2 cut(s) 529, 1410
AcyI GRCGYC 5 cut(s) 300, 342, 522, 914, 1349
AfaI GTAC 9 cut(s) 317, 395, 687, 1046, 1131, 1157, 1175, 1301, 1356
AfiI CCNNNNNNNGG 7 cut(s) 331, 550, 1028, 1081, 1100, 1345, 1421
AgeI ACCGGT 1 cut(s) 1357
AgsI TTSAA 3 cut(s) 313, 529, 1405
AjnI CCWGG 2 cut(s) 83, 1074
AjuI GAANNNNNNNTTGG 2 cut(s) 587, 619
Alw26I GTCTC 4 cut(s) 437, 583, 739, 756
AlwI GGATC 2 cut(s) 342, 535
Ama87I CYCGRG 2 cut(s) 858, 1148
AoxI GGCC 2 cut(s) 471, 1095
ApoI RAATTY 2 cut(s) 529, 1410
AsiGI ACCGGT 1 cut(s) 1357
Asp700I GAANNNNTTC 1 cut(s) 846
Asp718I GGTACC 1 cut(s) 685
AspLEI GCGC 9 cut(s) 240, 302, 413, 430, 507, 916, 1322, 1351, 1400
AspS9I GGNCC 3 cut(s) 370, 722, 1103
AsuC2I CCSGG 5 cut(s) 29, 327, 551, 921, 1023
AsuHPI GGTGA 1 cut(s) 349
AvaI CYCGRG 2 cut(s) 858, 1148
AvaII GGWCC 3 cut(s) 370, 722, 1103
BanI GGYRCC 4 cut(s) 299, 685, 913, 1348
BauI CACGAG 1 cut(s) 812
BceAI ACGGC 5 cut(s) 175, 215, 287, 313, 1197
BciT130I CCWGG 2 cut(s) 85, 1076
BciVI GTATCC 1 cut(s) 620
BcnI CCSGG 5 cut(s) 29, 327, 551, 921, 1023
BcoDI GTCTC 4 cut(s) 437, 583, 739, 756
BfmI CTRYAG 1 cut(s) 1308
BfoI RGCGCY 5 cut(s) 303, 508, 917, 1352, 1401
BfuI GTATCC 1 cut(s) 620
BglI GCCNNNNNGGC 1 cut(s) 982
BlpI GCTNAGC 2 cut(s) 420, 1194
Bme1390I CCNGG 7 cut(s) 29, 85, 327, 551, 921, 1023, 1076
Bme18I GGWCC 3 cut(s) 370, 722, 1103
BmeT110I CYCGRG 2 cut(s) 858, 1148
BmgT120I GGNCC 3 cut(s) 370, 722, 1103
BmrFI CCNGG 7 cut(s) 29, 85, 327, 551, 921, 1023, 1076
BmsI GCATC 1 cut(s) 1360
BplI GAGNNNNNCTC 1 cut(s) 28
Bpu1102I GCTNAGC 2 cut(s) 420, 1194
BpuMI CCSGG 5 cut(s) 29, 327, 551, 921, 1023
BsaHI GRCGYC 5 cut(s) 300, 342, 522, 914, 1349
BsaI GGTCTC 2 cut(s) 583, 739
BsaJI CCNNGG 5 cut(s) 84, 325, 549, 857, 1149
BsaWI WCCGGW 5 cut(s) 574, 724, 931, 995, 1357
BsaXI ACNNNNNCTCC 8 cut(s) 17, 47, 65, 95, 398, 428, 1308, 1338
Bsc4I CCNNNNNNNGG 7 cut(s) 331, 550, 1028, 1081, 1100, 1345, 1421
Bse118I RCCGGY 3 cut(s) 943, 1093, 1357
Bse1I ACTGG 6 cut(s) 508, 544, 938, 1105, 1106, 1352
BseBI CCWGG 2 cut(s) 85, 1076
BseDI CCNNGG 5 cut(s) 84, 325, 549, 857, 1149
BseLI CCNNNNNNNGG 7 cut(s) 331, 550, 1028, 1081, 1100, 1345, 1421
BseMII CTCAG 3 cut(s) 448, 899, 1208
BseNI ACTGG 6 cut(s) 508, 544, 938, 1105, 1106, 1352
BseRI GAGGAG 5 cut(s) 94, 265, 550, 577, 633
BsgI GTGCAG 1 cut(s) 172
Bsh1236I CGCG 6 cut(s) 39, 60, 411, 428, 430, 653
Bsh1285I CGRYCG 1 cut(s) 400
BshFI GGCC 2 cut(s) 473, 1097
BshNI GGYRCC 4 cut(s) 299, 685, 913, 1348
BshTI ACCGGT 1 cut(s) 1357
BsiEI CGRYCG 1 cut(s) 400
BsiHKCI CYCGRG 2 cut(s) 858, 1148
BslFI GGGAC 3 cut(s) 31, 101, 532
BslI CCNNNNNNNGG 7 cut(s) 331, 550, 1028, 1081, 1100, 1345, 1421
BsmAI GTCTC 4 cut(s) 437, 583, 739, 756
BsmBI CGTCTC 1 cut(s) 437
BsmFI GGGAC 3 cut(s) 31, 101, 532
BsmI GAATGC 1 cut(s) 798
BsnI GGCC 2 cut(s) 473, 1097
Bso31I GGTCTC 2 cut(s) 583, 739
BsoBI CYCGRG 2 cut(s) 858, 1148
Bsp143I GATC 5 cut(s) 91, 334, 387, 453, 540
Bsp1720I GCTNAGC 2 cut(s) 420, 1194
Bsp68I TCGCGA 1 cut(s) 653
BspANI GGCC 2 cut(s) 473, 1097
BspCNI CTCAG 3 cut(s) 447, 898, 1207
BspFNI CGCG 6 cut(s) 39, 60, 411, 428, 430, 653
BspPI GGATC 2 cut(s) 342, 535
BspQI GCTCTTC 1 cut(s) 446
BspT107I GGYRCC 4 cut(s) 299, 685, 913, 1348
BspTNI GGTCTC 2 cut(s) 583, 739
BsrBI CCGCTC 4 cut(s) 467, 572, 641, 929
BsrFI RCCGGY 3 cut(s) 943, 1093, 1357
BsrI ACTGG 6 cut(s) 508, 544, 938, 1105, 1106, 1352
BssAI RCCGGY 3 cut(s) 943, 1093, 1357
BssECI CCNNGG 5 cut(s) 84, 325, 549, 857, 1149
BssMI GATC 5 cut(s) 91, 334, 387, 453, 540
BssNAI GTATAC 1 cut(s) 1072
BssNI GRCGYC 5 cut(s) 300, 342, 522, 914, 1349
BssSI CACGAG 1 cut(s) 812
Bst1107I GTATAC 1 cut(s) 1072
Bst2BI CACGAG 1 cut(s) 812
Bst2UI CCWGG 2 cut(s) 85, 1076
Bst4CI ACNGT 5 cut(s) 685, 1160, 1253, 1345, 1421
Bst6I CTCTTC 4 cut(s) 446, 452, 614, 837
BstACI GRCGYC 5 cut(s) 300, 342, 522, 914, 1349
BstC8I GCNNGC 8 cut(s) 198, 426, 475, 714, 945, 1034, 1116, 1233
BstDEI CTNAG 4 cut(s) 420, 434, 885, 1194
BstFNI CGCG 6 cut(s) 39, 60, 411, 428, 430, 653
BstH2I RGCGCY 5 cut(s) 303, 508, 917, 1352, 1401
BstHHI GCGC 9 cut(s) 240, 302, 413, 430, 507, 916, 1322, 1351, 1400
BstKTI GATC 5 cut(s) 94, 337, 390, 456, 543
BstMAI GTCTC 4 cut(s) 437, 583, 739, 756
BstMBI GATC 5 cut(s) 91, 334, 387, 453, 540
BstMCI CGRYCG 1 cut(s) 400
BstNI CCWGG 2 cut(s) 85, 1076
BstNSI RCATGY 2 cut(s) 955, 989
BstSCI CCNGG 7 cut(s) 27, 83, 325, 549, 919, 1021, 1074
BstSFI CTRYAG 1 cut(s) 1308
BstUI CGCG 6 cut(s) 39, 60, 411, 428, 430, 653
BstX2I RGATCY 2 cut(s) 334, 540
BstYI RGATCY 2 cut(s) 334, 540
BstZ17I GTATAC 1 cut(s) 1072
BsuI GTATCC 1 cut(s) 620
BsuRI GGCC 2 cut(s) 473, 1097
BtsI GCAGTG 2 cut(s) 1191, 1329
BtsIMutI CAGTG 6 cut(s) 515, 945, 1098, 1191, 1258, 1329
BtuMI TCGCGA 1 cut(s) 653
Cac8I GCNNGC 8 cut(s) 198, 426, 475, 714, 945, 1034, 1116, 1233
CfoI GCGC 9 cut(s) 240, 302, 413, 430, 507, 916, 1322, 1351, 1400
Cfr10I RCCGGY 3 cut(s) 943, 1093, 1357
Cfr13I GGNCC 3 cut(s) 370, 722, 1103
CpoI CGGWCCG 1 cut(s) 722
CseI GACGC 5 cut(s) 350, 419, 530, 754, 1172
Csp6I GTAC 9 cut(s) 316, 394, 686, 1045, 1130, 1156, 1174, 1300, 1355
CspAI ACCGGT 1 cut(s) 1357
CspI CGGWCCG 1 cut(s) 722
CviAII CATG 4 cut(s) 148, 382, 952, 986
CviQI GTAC 9 cut(s) 316, 394, 686, 1045, 1130, 1156, 1174, 1300, 1355
DdeI CTNAG 4 cut(s) 420, 434, 885, 1194
DinI GGCGCC 3 cut(s) 301, 915, 1350
DpnI GATC 5 cut(s) 93, 336, 389, 455, 542
DpnII GATC 5 cut(s) 91, 334, 387, 453, 540
DrdI GACNNNNNNGTC 1 cut(s) 302
DseDI GACNNNNNNGTC 1 cut(s) 302
EaeI YGGCCR 2 cut(s) 471, 1095
Eam1104I CTCTTC 4 cut(s) 446, 452, 614, 837
EarI CTCTTC 4 cut(s) 446, 452, 614, 837
EciI GGCGGA 4 cut(s) 97, 244, 571, 1041
Eco31I GGTCTC 2 cut(s) 583, 739
Eco47I GGWCC 3 cut(s) 370, 722, 1103
Eco88I CYCGRG 2 cut(s) 858, 1148
EcoO109I RGGNCCY 1 cut(s) 370
EcoRI GAATTC 1 cut(s) 529
EcoRII CCWGG 2 cut(s) 83, 1074
EgeI GGCGCC 3 cut(s) 301, 915, 1350
EheI GGCGCC 3 cut(s) 301, 915, 1350
Esp3I CGTCTC 1 cut(s) 437
FaeI CATG 4 cut(s) 151, 385, 955, 989
FaqI GGGAC 3 cut(s) 31, 101, 532
FatI CATG 4 cut(s) 147, 381, 951, 985
FauI CCCGC 3 cut(s) 44, 65, 433
FblI GTMKAC 2 cut(s) 519, 1071
GlaI GCGC 9 cut(s) 239, 301, 412, 429, 506, 915, 1321, 1350, 1399
HaeII RGCGCY 5 cut(s) 303, 508, 917, 1352, 1401
HaeIII GGCC 2 cut(s) 473, 1097
HgaI GACGC 5 cut(s) 350, 419, 530, 754, 1172
HhaI GCGC 9 cut(s) 240, 302, 413, 430, 507, 916, 1322, 1351, 1400
Hin1I GRCGYC 5 cut(s) 300, 342, 522, 914, 1349
Hin1II CATG 4 cut(s) 151, 385, 955, 989
Hin6I GCGC 9 cut(s) 238, 300, 411, 428, 505, 914, 1320, 1349, 1398
HinP1I GCGC 9 cut(s) 238, 300, 411, 428, 505, 914, 1320, 1349, 1398
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HinfI GANTC 8 cut(s) 32, 41, 491, 615, 665, 763, 775, 1405
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 8 cut(s) 520, 991, 1045, 1072, 1130, 1156, 1263, 1300
Hpy188III TCNNGA 9 cut(s) 338, 451, 652, 760, 779, 812, 896, 1148, 1415
Hpy8I GTNNAC 8 cut(s) 520, 991, 1045, 1072, 1130, 1156, 1263, 1300
HpyAV CCTTC 5 cut(s) 268, 471, 548, 883, 1250
HpyCH4III ACNGT 5 cut(s) 685, 1160, 1253, 1345, 1421
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 4 cut(s) 153, 796, 955, 1373
HpyF3I CTNAG 4 cut(s) 420, 434, 885, 1194
HpySE526I ACGT 1 cut(s) 204
Hsp92I GRCGYC 5 cut(s) 300, 342, 522, 914, 1349
Hsp92II CATG 4 cut(s) 151, 385, 955, 989
HspAI GCGC 9 cut(s) 238, 300, 411, 428, 505, 914, 1320, 1349, 1398
KasI GGCGCC 3 cut(s) 299, 913, 1348
KpnI GGTACC 1 cut(s) 689
KroI GCCGGC 1 cut(s) 943
KroNI GCCGGC 1 cut(s) 945
Kzo9I GATC 5 cut(s) 91, 334, 387, 453, 540
LguI GCTCTTC 1 cut(s) 446
LweI GCATC 1 cut(s) 1360
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 4 cut(s) 355, 670, 809, 1160
MalI GATC 5 cut(s) 93, 336, 389, 455, 542
MbiI CCGCTC 4 cut(s) 467, 572, 641, 929
MboI GATC 5 cut(s) 91, 334, 387, 453, 540
MboII GAAGA 5 cut(s) 433, 439, 601, 715, 854
MflI RGATCY 2 cut(s) 334, 540
MluCI AATT 7 cut(s) 529, 728, 755, 798, 956, 1282, 1410
Mly113I GGCGCC 3 cut(s) 300, 914, 1349
MlyI GAGTC 3 cut(s) 26, 50, 500
MmeI TCCRAC 4 cut(s) 39, 510, 704, 986
MroNI GCCGGC 1 cut(s) 943
MroXI GAANNNNTTC 1 cut(s) 846
MspA1I CMGCKG 3 cut(s) 872, 1016, 1064
MspR9I CCNGG 7 cut(s) 29, 85, 327, 551, 921, 1023, 1076
Mva1269I GAATGC 1 cut(s) 798
MvaI CCWGG 2 cut(s) 85, 1076
MvnI CGCG 6 cut(s) 39, 60, 411, 428, 430, 653
NaeI GCCGGC 1 cut(s) 945
NarI GGCGCC 3 cut(s) 300, 914, 1349
NciI CCSGG 5 cut(s) 29, 327, 551, 921, 1023
NdeII GATC 5 cut(s) 91, 334, 387, 453, 540
NgoMIV GCCGGC 1 cut(s) 943
NlaIII CATG 4 cut(s) 151, 385, 955, 989
NmuCI GTSAC 4 cut(s) 355, 670, 809, 1160
NruI TCGCGA 1 cut(s) 653
NspI RCATGY 2 cut(s) 955, 989
PciSI GCTCTTC 1 cut(s) 446
PcsI WCGNNNNNNNCGW 3 cut(s) 210, 372, 486
PctI GAATGC 1 cut(s) 798
PdiI GCCGGC 1 cut(s) 945
PdmI GAANNNNTTC 1 cut(s) 846
PfeI GAWTC 5 cut(s) 615, 665, 763, 775, 1405
PflFI GACNNNGTC 1 cut(s) 748
PflMI CCANNNNNTGG 2 cut(s) 1345, 1421
PinAI ACCGGT 1 cut(s) 1357
PleI GAGTC 3 cut(s) 26, 49, 499
PluTI GGCGCC 3 cut(s) 303, 917, 1352
PpsI GAGTC 3 cut(s) 26, 49, 499
PpuMI RGGWCCY 1 cut(s) 370
Psp5II RGGWCCY 1 cut(s) 370
Psp6I CCWGG 2 cut(s) 83, 1074
PspGI CCWGG 2 cut(s) 83, 1074
PspPI GGNCC 3 cut(s) 370, 722, 1103
PspPPI RGGWCCY 1 cut(s) 370
PsuI RGATCY 2 cut(s) 334, 540
PsyI GACNNNGTC 1 cut(s) 748
PvuII CAGCTG 2 cut(s) 872, 1064
RruI TCGCGA 1 cut(s) 653
RsaI GTAC 9 cut(s) 317, 395, 687, 1046, 1131, 1157, 1175, 1301, 1356
RsaNI GTAC 9 cut(s) 316, 394, 686, 1045, 1130, 1156, 1174, 1300, 1355
Rsr2I CGGWCCG 1 cut(s) 722
RsrII CGGWCCG 1 cut(s) 722
SalI GTCGAC 1 cut(s) 518
SapI GCTCTTC 1 cut(s) 446
Sau3AI GATC 5 cut(s) 91, 334, 387, 453, 540
Sau96I GGNCC 3 cut(s) 370, 722, 1103
SchI GAGTC 3 cut(s) 26, 50, 500
ScrFI CCNGG 7 cut(s) 29, 85, 327, 551, 921, 1023, 1076
SfaNI GCATC 1 cut(s) 1360
SfcI CTRYAG 1 cut(s) 1308
SfoI GGCGCC 3 cut(s) 301, 915, 1350
SgrDI CGTCGACG 1 cut(s) 518
SinI GGWCC 3 cut(s) 370, 722, 1103
Sse9I AATT 7 cut(s) 529, 728, 755, 798, 956, 1282, 1410
SspDI GGCGCC 3 cut(s) 299, 913, 1348
StyD4I CCNGG 7 cut(s) 27, 83, 325, 549, 919, 1021, 1074
TaaI ACNGT 5 cut(s) 685, 1160, 1253, 1345, 1421
TaiI ACGT 1 cut(s) 207
TaqI TCGA 8 cut(s) 66, 234, 339, 375, 390, 519, 618, 759
TasI AATT 7 cut(s) 529, 728, 755, 798, 956, 1282, 1410
TatI WGTACW 1 cut(s) 1299
TfiI GAWTC 5 cut(s) 615, 665, 763, 775, 1405
TscAI CASTG 6 cut(s) 515, 945, 1105, 1191, 1258, 1329
TseFI GTSAC 4 cut(s) 355, 670, 809, 1160
Tsp45I GTSAC 4 cut(s) 355, 670, 809, 1160
TspDTI ATGAA 1 cut(s) 1320
TspGWI ACGGA 3 cut(s) 343, 523, 658
TspRI CASTG 6 cut(s) 515, 945, 1105, 1191, 1258, 1329
Tth111I GACNNNGTC 1 cut(s) 748
Van91I CCANNNNNTGG 2 cut(s) 1345, 1421
VpaK11BI GGWCC 3 cut(s) 370, 722, 1103
XapI RAATTY 2 cut(s) 529, 1410
XceI RCATGY 2 cut(s) 955, 989
XmiI GTMKAC 2 cut(s) 519, 1071
XmnI GAANNNNTTC 1 cut(s) 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.