Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8262419.1

Orthogroup ID

OG0002525

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 346

Gene Structure 346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8262419.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 346 bp

gcagcagcagcagcagcagcaacagagaatggcttcggacgtttaccgggatcagccggtgtacagtgctataccgcagccacagcaacagacgagtagtctaccgccacagccgcccaagtacgtggcgacgtacgccgaaacggcgccgtatactcaggtggcgtatgacagcgcaacggggaggcaggtgtactatactgcgcagggtggaggggttgtgcagccgcagcaggcgtactcagcagtggggcccgctgcggttagcggcgaaatgcgagtggcgggcgggttgagcccggagggtaaggtggtgggttcaaaacttccgcaaacttccgcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1

Protein Analysis

114

Amino Acids

12.13

Weight (kDa)

8.17

Isoelectric Point (pI)

60.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09620 AT5G09620 AT5G64430
fragaria_vesca	FvH4_2g11130 FvH4_5g33880 FvH4_5g33880
malus_domestica	MD05G1050100.v1.1 MD08G1208700.v1.1 MD10G1057400.v1.1 MD15G1392800.v1.1 MD17G1160300.v1.1
prunus_persica	Prupe.1G540000_v2.0.a1 Prupe.1G540000_v2.0.a1 Prupe.1G540000_v2.0.a1 Prupe.8G076200_v2.0.a1 Prupe.8G076200_v2.0.a1
pyrus_communis	pycom05g04200 pycom08g18010 pycom10g04430 pycom15g35330
rosa_chinensis	RchiOBHm_Chr6g0269391 RchiOBHm_Chr7g0233221
rosa_laevigata	RLG00000001285 RLG00000013852
rosa_multiflora	Rmu_co8262419.1_g000001 Rmu_co8415439.1_g000001 Rmu_ssc0000291.1_g000014
rosa_roxburghii	Rroxscaffold_3G00227470 Rroxscaffold_7G00198740
rosa_rugosa	Rorug06G0047400 Rorug07G0279600
rosa_samantha	Rh6AG167900 Rh6BG173400 Rh6CG167400 Rh6DG159300 Rh7AG435300 Rh7BG407800 Rh7CG454300 Rh7DG423300
rosa_wichuraiana	Rw6G014440 Rw7G035810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	179
Acc16I	TGCGCA	1 cut(s)	205
Acc36I	ACCTGC	1 cut(s)	179
AccB1I	GGYRCC	1 cut(s)	146
AccI	GTMKAC	2 cut(s)	101, 153
AccII	CGCG	1 cut(s)	342
AclWI	GGATC	1 cut(s)	58
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	5 cut(s)	63, 123, 135, 195, 240
AgsI	TTSAA	1 cut(s)	322
AhdI	GACNNNNNGTC	1 cut(s)	97
AlwI	GGATC	1 cut(s)	58
AoxI	GGCC	1 cut(s)	252
ApaI	GGGCCC	1 cut(s)	256
Asp700I	GAANNNNTTC	1 cut(s)	32
AspLEI	GCGC	3 cut(s)	149, 177, 206
AspS9I	GGNCC	2 cut(s)	252, 253
AsuC2I	CCSGG	2 cut(s)	48, 300
BaeGI	GKGCMC	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	146
BanII	GRGCYC	2 cut(s)	256, 300
BceAI	ACGGC	2 cut(s)	134, 160
BcnI	CCSGG	2 cut(s)	48, 300
BfoI	RGCGCY	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	179
BglI	GCCNNNNNGGC	1 cut(s)	144
Bme1390I	CCNGG	2 cut(s)	48, 300
BmeRI	GACNNNNNGTC	1 cut(s)	97
BmgT120I	GGNCC	2 cut(s)	252, 253
BmiI	GGNNCC	3 cut(s)	148, 253, 254
BmrFI	CCNGG	2 cut(s)	48, 300
BpuMI	CCSGG	2 cut(s)	48, 300
BsaAI	YACGTR	1 cut(s)	125
BsaHI	GRCGYC	1 cut(s)	147
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bse118I	RCCGGY	1 cut(s)	56
BseMII	CTCAG	2 cut(s)	171, 256
BseSI	GKGCMC	1 cut(s)	256
BsgI	GTGCAG	1 cut(s)	243
Bsh1236I	CGCG	1 cut(s)	342
BshFI	GGCC	1 cut(s)	254
BshNI	GGYRCC	1 cut(s)	146
BsiSI	CCGG	3 cut(s)	47, 57, 300
BsiWI	CGTACG	1 cut(s)	133
BsnI	GGCC	1 cut(s)	254
Bsp120I	GGGCCC	1 cut(s)	252
Bsp1286I	GDGCHC	2 cut(s)	256, 300
Bsp1407I	TGTACA	1 cut(s)	61
Bsp143I	GATC	1 cut(s)	50
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	2 cut(s)	170, 255
BspFNI	CGCG	1 cut(s)	342
BspLI	GGNNCC	3 cut(s)	148, 253, 254
BspMI	ACCTGC	1 cut(s)	179
BspPI	GGATC	1 cut(s)	58
BspT107I	GGYRCC	1 cut(s)	146
BsrFI	RCCGGY	1 cut(s)	56
BsrGI	TGTACA	1 cut(s)	61
BssAI	RCCGGY	1 cut(s)	56
BssMI	GATC	1 cut(s)	50
BssNAI	GTATAC	1 cut(s)	154
BssNI	GRCGYC	1 cut(s)	147
Bst1107I	GTATAC	1 cut(s)	154
Bst4CI	ACNGT	1 cut(s)	66
BstACI	GRCGYC	1 cut(s)	147
BstAUI	TGTACA	1 cut(s)	61
BstBAI	YACGTR	1 cut(s)	125
BstC8I	GCNNGC	3 cut(s)	235, 256, 287
BstDEI	CTNAG	2 cut(s)	157, 242
BstFNI	CGCG	1 cut(s)	342
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	3 cut(s)	149, 177, 206
BstKTI	GATC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	50
BstSCI	CCNGG	2 cut(s)	46, 298
BstSLI	GKGCMC	1 cut(s)	256
BstUI	CGCG	1 cut(s)	342
BstXI	CCANNNNNNTGG	1 cut(s)	125
BstZ17I	GTATAC	1 cut(s)	154
BsuRI	GGCC	1 cut(s)	254
BtsI	GCAGTG	1 cut(s)	253
BtsIMutI	CAGTG	2 cut(s)	71, 253
BveI	ACCTGC	1 cut(s)	179
Cac8I	GCNNGC	3 cut(s)	235, 256, 287
CfoI	GCGC	3 cut(s)	149, 177, 206
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	2 cut(s)	252, 253
Csp6I	GTAC	5 cut(s)	62, 122, 134, 194, 239
CviJI	RGCY	7 cut(s)	33, 56, 80, 113, 227, 254, 298
CviKI_1	RGCY	7 cut(s)	33, 56, 80, 113, 227, 254, 298
CviQI	GTAC	5 cut(s)	62, 122, 134, 194, 239
DdeI	CTNAG	2 cut(s)	157, 242
DinI	GGCGCC	1 cut(s)	148
DpnI	GATC	1 cut(s)	52
DpnII	GATC	1 cut(s)	50
DriI	GACNNNNNGTC	1 cut(s)	97
Eam1105I	GACNNNNNGTC	1 cut(s)	97
Eco24I	GRGCYC	2 cut(s)	256, 300
EcoO109I	RGGNCCY	1 cut(s)	252
EcoT38I	GRGCYC	2 cut(s)	256, 300
EgeI	GGCGCC	1 cut(s)	148
EheI	GGCGCC	1 cut(s)	148
FaiI	YATR	4 cut(s)	72, 154, 169, 199
FauI	CCCGC	3 cut(s)	263, 278, 282
FblI	GTMKAC	2 cut(s)	101, 153
FriOI	GRGCYC	2 cut(s)	256, 300
FspI	TGCGCA	1 cut(s)	205
GlaI	GCGC	3 cut(s)	148, 176, 205
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	3 cut(s)	47, 57, 300
HhaI	GCGC	3 cut(s)	149, 177, 206
Hin1I	GRCGYC	1 cut(s)	147
Hin6I	GCGC	3 cut(s)	147, 175, 204
HinP1I	GCGC	3 cut(s)	147, 175, 204
HpaII	CCGG	3 cut(s)	47, 57, 300
Hpy166II	GTNNAC	5 cut(s)	44, 62, 102, 154, 194
Hpy188I	TCNGA	1 cut(s)	38
Hpy8I	GTNNAC	5 cut(s)	44, 62, 102, 154, 194
Hpy99I	CGWCG	1 cut(s)	134
HpyCH4III	ACNGT	1 cut(s)	66
HpyCH4IV	ACGT	3 cut(s)	40, 124, 132
HpyCH4V	TGCA	1 cut(s)	224
HpyF3I	CTNAG	2 cut(s)	157, 242
HpySE526I	ACGT	3 cut(s)	40, 124, 132
Hsp92I	GRCGYC	1 cut(s)	147
HspAI	GCGC	3 cut(s)	147, 175, 204
KasI	GGCGCC	1 cut(s)	146
Kzo9I	GATC	1 cut(s)	50
LpnPI	CCDG	7 cut(s)	60, 70, 144, 174, 192, 219, 313
MaeII	ACGT	3 cut(s)	40, 124, 132
MalI	GATC	1 cut(s)	52
MboI	GATC	1 cut(s)	50
MhlI	GDGCHC	2 cut(s)	256, 300
Mly113I	GGCGCC	1 cut(s)	147
MnlI	CCTC	3 cut(s)	178, 207, 296
MroXI	GAANNNNTTC	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	258
MspI	CCGG	3 cut(s)	47, 57, 300
MspR9I	CCNGG	2 cut(s)	48, 300
MvnI	CGCG	1 cut(s)	342
NarI	GGCGCC	1 cut(s)	147
NciI	CCSGG	2 cut(s)	48, 300
NdeII	GATC	1 cut(s)	50
NlaIV	GGNNCC	3 cut(s)	148, 253, 254
NsbI	TGCGCA	1 cut(s)	205
PaqCI	CACCTGC	1 cut(s)	179
PdmI	GAANNNNTTC	1 cut(s)	32
Pfl23II	CGTACG	1 cut(s)	133
PluTI	GGCGCC	1 cut(s)	150
Ppu21I	YACGTR	1 cut(s)	125
PspLI	CGTACG	1 cut(s)	133
PspN4I	GGNNCC	3 cut(s)	148, 253, 254
PspOMI	GGGCCC	1 cut(s)	252
PspPI	GGNCC	2 cut(s)	252, 253
RsaI	GTAC	5 cut(s)	63, 123, 135, 195, 240
RsaNI	GTAC	5 cut(s)	62, 122, 134, 194, 239
Sau3AI	GATC	1 cut(s)	50
Sau96I	GGNCC	2 cut(s)	252, 253
ScrFI	CCNGG	2 cut(s)	48, 300
SduI	GDGCHC	2 cut(s)	256, 300
SetI	ASST	6 cut(s)	43, 127, 135, 163, 193, 313
SfoI	GGCGCC	1 cut(s)	148
SspDI	GGCGCC	1 cut(s)	146
StyD4I	CCNGG	2 cut(s)	46, 298
TaaI	ACNGT	1 cut(s)	66
TaiI	ACGT	3 cut(s)	43, 127, 135
TatI	WGTACW	2 cut(s)	61, 193
TauI	GCSGC	3 cut(s)	116, 230, 271
TscAI	CASTG	2 cut(s)	71, 253
TspRI	CASTG	2 cut(s)	71, 253
XmiI	GTMKAC	2 cut(s)	101, 153
XmnI	GAANNNNTTC	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.