Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004628

Physical Location & Seq

Genomic Coordinates Reverse (-)

3601513 .. 3605350

Gene Structure 3838 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G11300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGTATTGCTCTTCTTCGATGCATCCAAATGCAAACAAAGAAAATATCTCTACTTCAGATGTACAGGAGAGTTTTGTACGAATAACGAGATCACGAGCTAAAAAAGCCATGGGAAGAGGAGTATCAATACCTCCAACAAAACCTTCTTTTAAACAGCAAAAGAGACGTGCAGTACTTAAGGATGTGAGTAATACCTCTGCAGATATTATTTATTCAGAACTTCGAAAGGGAGGCAACATCAAGGCAAACAGAAAATGTCTAAAAGAGCCTAAAAAAGCAGCAAAGGAAGGTGCTAACAGTGCCATGGATATTCTGGTAGATATGCATACAGAAAAATCAAAATTAGCAGAAGATTTGTCCAAGATCAGGATGGCTGAAGCCCAAGATGTCTCTCTTTCAAACTTTAAAGATGAAGAAATTACTGAGCAACAAGAAGATGGATCAGGTGTCATGGAGTTACTTCAAGTTGTAGATATTGATTCCAACGTCGAAGATCCACAGTGTTGCAGCTTGTATGCTGCTGATATATATGACAACATACATGTTGCAGAGCTTCAACAACGACCCTTGGCTAATTATATGGAGCTTGTGCAGCGAGATATCGACCCAGACATGAGAAAGATTCTGATTGACTGGCTTGTAGAAGTTTCTGACGACTACAAGCTGGTTCCAGATACGCTTTACCTTACAGTGAATCTTATCGACCGGTTTCTGTCCAACAGTTACATTGAAAGGCAAAGACTCCAGCTCCTTGGTGTCTCTTGCATGCTTATAGCTTCAAAATATGAAGAGCTTTCCGCACCAGGGGTGGAGGAGTTTTGCTTCATTACGGCCAACACATACACAAGACCAGAAGTGCTGAGCATGGAGATTCAAATTCTAAATTTTGTGCACTTTAGATTATCGGTTCCTACCACCAAAACATTTCTGAGGCGGTTCATTAAAGCAGCTCAAGCTTCGTACAAGGTGCCTTTCATTGAACTGGAGTATTTAGCAAACTATCTCGCCGAATTGACACTGGTGGAATATAGTTTCCTAAGGTTCCTGCCATCACTAATTGCTGCTTCAGCTGTTTTCCTAGCCCGATGGACACTCGACCAAACTGACCATCCTTGGAACCCTACTCTGCAACACTACACCAGATATGAGGTAGCTGAGCTGAAGAACACAGTTCTCGCCATGGAGGACTTGCAGCTCAACACCAGTGGCTGTACTCTCGCTGCCACCCGTGAGAAATACAACCAACCAAAGTTTAAGAGCGTGGCAAAGCTGACATCTCCCAAACGAGTCACATCACTATTCTCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008283 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:2000026 GO:2000038 GO:2000123

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

436

Amino Acids

49.69

Weight (kDa)

6.37

Isoelectric Point (pI)

49.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	175 - 302	1.1e-43	Cyclin, N-terminal domain
Cyclin_C	PF02984	304 - 374	8.2e-21	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15570 AT5G11300 AT5G11300 AT5G25380 AT5G25380 AT5G25380 AT5G25380
fragaria_vesca	FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100
malus_domestica	MD08G1137300.v1.1 MD15G1115900.v1.1
prunus_persica	Prupe.1G467200_v2.0.a1
pyrus_communis	pycom08g11590 pycom15g10450
rosa_chinensis	RchiOBHm_Chr6g0312821
rosa_laevigata	RLG00000010295
rosa_multiflora	Rmu_co8351801.1_g000001 Rmu_sc0008049.1_g000007
rosa_roxburghii	Rroxscaffold_7G00156460
rosa_rugosa	Rorug06G0399900 Rorug06G0399900 Rorug06G0399900
rosa_samantha	Rh6AG517000 Rh6BG528400 Rh6CG533100 Rh6DG519600
rosa_wichuraiana	Rw6G044910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	967
AciI	CCGC	2 cut(s)	798, 934
AclWI	GGATC	2 cut(s)	448, 488
AcoI	YGGCCR	1 cut(s)	831
AcsI	RAATTY	2 cut(s)	876, 883
AcuI	CTGAAG	4 cut(s)	39, 396, 1050, 1181
AfaI	GTAC	5 cut(s)	63, 78, 174, 962, 1213
AfiI	CCNNNNNNNGG	2 cut(s)	366, 804
AflII	CTTAAG	1 cut(s)	176
AflIII	ACRYGT	1 cut(s)	541
AgeI	ACCGGT	1 cut(s)	705
AgsI	TTSAA	7 cut(s)	399, 464, 557, 731, 780, 875, 980
AjiI	CACGTC	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	802
AjuI	GAANNNNNNNTTGG	2 cut(s)	127, 159
Alw21I	GWGCWC	1 cut(s)	894
Alw26I	GTCTC	3 cut(s)	157, 394, 763
Alw44I	GTGCAC	1 cut(s)	890
AlwI	GGATC	2 cut(s)	448, 488
AlwNI	CAGNNNCTG	1 cut(s)	1209
AoxI	GGCC	1 cut(s)	831
ApaLI	GTGCAC	1 cut(s)	890
ApeKI	GCWGC	8 cut(s)	278, 507, 518, 592, 947, 1061, 1192, 1220
ApoI	RAATTY	2 cut(s)	876, 883
AsiGI	ACCGGT	1 cut(s)	705
AsuII	TTCGAA	1 cut(s)	223
AxyI	CCTNAGG	1 cut(s)	1037
BaeGI	GKGCMC	1 cut(s)	894
BanI	GGYRCC	1 cut(s)	967
BauI	CACGAG	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	894
BbvI	GCAGC	8 cut(s)	290, 505, 519, 604, 959, 1048, 1204, 1207
BccI	CCATC	5 cut(s)	364, 431, 1057, 1080, 1116
BceAI	ACGGC	1 cut(s)	846
BciT130I	CCWGG	1 cut(s)	804
BcoDI	GTCTC	3 cut(s)	157, 394, 763
BfaI	CTAG	1 cut(s)	1079
BfmI	CTRYAG	1 cut(s)	198
BfrI	CTTAAG	1 cut(s)	176
BisI	GCNGC	8 cut(s)	279, 508, 519, 593, 948, 1062, 1193, 1221
BlpI	GCTNAGC	2 cut(s)	860, 1155
BlsI	GCNGC	8 cut(s)	280, 509, 520, 594, 949, 1063, 1194, 1222
BmcAI	AGTACT	1 cut(s)	174
Bme1390I	CCNGG	1 cut(s)	804
BmgBI	CACGTC	1 cut(s)	167
BmiI	GGNNCC	5 cut(s)	669, 909, 969, 1043, 1118
BmrFI	CCNGG	1 cut(s)	804
BmsI	GCATC	2 cut(s)	9, 31
BpmI	CTGGAG	2 cut(s)	728, 1004
Bpu1102I	GCTNAGC	2 cut(s)	860, 1155
Bpu14I	TTCGAA	1 cut(s)	223
BpuEI	CTTGAG	2 cut(s)	936, 1288
BsaJI	CCNNGG	7 cut(s)	108, 303, 567, 751, 803, 1112, 1179
BsaWI	WCCGGW	1 cut(s)	705
BsaXI	ACNNNNNCTCC	2 cut(s)	732, 762
Bsc4I	CCNNNNNNNGG	2 cut(s)	366, 804
Bse118I	RCCGGY	1 cut(s)	705
Bse1I	ACTGG	4 cut(s)	638, 987, 1023, 1203
Bse21I	CCTNAGG	1 cut(s)	1037
BseBI	CCWGG	1 cut(s)	804
BseDI	CCNNGG	7 cut(s)	108, 303, 567, 751, 803, 1112, 1179
BseGI	GGATG	4 cut(s)	22, 187, 375, 1108
BseLI	CCNNNNNNNGG	2 cut(s)	366, 804
BseMII	CTCAG	4 cut(s)	414, 851, 920, 1146
BseNI	ACTGG	4 cut(s)	638, 987, 1023, 1203
BseRI	GAGGAG	2 cut(s)	132, 827
BseSI	GKGCMC	1 cut(s)	894
BseXI	GCAGC	8 cut(s)	290, 505, 519, 604, 959, 1048, 1204, 1207
BsgI	GTGCAG	2 cut(s)	189, 611
Bsh1285I	CGRYCG	1 cut(s)	706
BshFI	GGCC	1 cut(s)	833
BshNI	GGYRCC	1 cut(s)	967
BshTI	ACCGGT	1 cut(s)	705
BsiEI	CGRYCG	1 cut(s)	706
BsiHKAI	GWGCWC	1 cut(s)	894
BsiSI	CCGG	1 cut(s)	706
BslI	CCNNNNNNNGG	2 cut(s)	366, 804
BsmAI	GTCTC	3 cut(s)	157, 394, 763
BsmBI	CGTCTC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	833
Bsp119I	TTCGAA	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	894
Bsp1407I	TGTACA	1 cut(s)	61
Bsp143I	GATC	4 cut(s)	89, 363, 440, 493
Bsp1720I	GCTNAGC	2 cut(s)	860, 1155
Bsp19I	CCATGG	3 cut(s)	108, 303, 1179
BspACI	CCGC	2 cut(s)	798, 934
BspANI	GGCC	1 cut(s)	833
BspCNI	CTCAG	4 cut(s)	415, 852, 921, 1147
BspLI	GGNNCC	5 cut(s)	669, 909, 969, 1043, 1118
BspMAI	CTGCAG	1 cut(s)	202
BspPI	GGATC	2 cut(s)	448, 488
BspQI	GCTCTTC	2 cut(s)	16, 783
BspT104I	TTCGAA	1 cut(s)	223
BspT107I	GGYRCC	1 cut(s)	967
BspTI	CTTAAG	1 cut(s)	176
BsrFI	RCCGGY	1 cut(s)	705
BsrGI	TGTACA	1 cut(s)	61
BsrI	ACTGG	4 cut(s)	638, 987, 1023, 1203
BssAI	RCCGGY	1 cut(s)	705
BssECI	CCNNGG	7 cut(s)	108, 303, 567, 751, 803, 1112, 1179
BssMI	GATC	4 cut(s)	89, 363, 440, 493
BssSI	CACGAG	1 cut(s)	93
BssT1I	CCWWGG	6 cut(s)	108, 303, 567, 751, 1112, 1179
Bst2BI	CACGAG	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	804
Bst4CI	ACNGT	5 cut(s)	299, 501, 691, 722, 1171
Bst6I	CTCTTC	3 cut(s)	16, 109, 783
BstAFI	CTTAAG	1 cut(s)	176
BstAUI	TGTACA	1 cut(s)	61
BstBI	TTCGAA	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	767
BstDEI	CTNAG	5 cut(s)	423, 860, 929, 1037, 1155
BstDSI	CCRYGG	3 cut(s)	108, 303, 1179
BstF5I	GGATG	4 cut(s)	22, 187, 375, 1108
BstKTI	GATC	4 cut(s)	92, 366, 443, 496
BstMAI	GTCTC	3 cut(s)	157, 394, 763
BstMBI	GATC	4 cut(s)	89, 363, 440, 493
BstMCI	CGRYCG	1 cut(s)	706
BstMWI	GCNNNNNNNGC	5 cut(s)	104, 299, 592, 953, 1067
BstNI	CCWGG	1 cut(s)	804
BstNSI	RCATGY	2 cut(s)	545, 769
BstSCI	CCNGG	1 cut(s)	802
BstSFI	CTRYAG	1 cut(s)	198
BstSLI	GKGCMC	1 cut(s)	894
BstV1I	GCAGC	8 cut(s)	290, 505, 519, 604, 959, 1048, 1204, 1207
BstX2I	RGATCY	1 cut(s)	493
BstXI	CCANNNNNNTGG	1 cut(s)	752
BstYI	RGATCY	1 cut(s)	493
Bsu36I	CCTNAGG	1 cut(s)	1037
BsuRI	GGCC	1 cut(s)	833
BtgI	CCRYGG	3 cut(s)	108, 303, 1179
BtrI	CACGTC	1 cut(s)	167
BtsCI	GGATG	4 cut(s)	22, 187, 375, 1108
BtsIMutI	CAGTG	5 cut(s)	304, 506, 696, 1016, 1210
Cac8I	GCNNGC	1 cut(s)	767
CaiI	CAGNNNCTG	1 cut(s)	1209
Cfr10I	RCCGGY	1 cut(s)	705
Csp6I	GTAC	5 cut(s)	62, 77, 173, 961, 1212
CspAI	ACCGGT	1 cut(s)	705
CspCI	CAANNNNNGTGG	2 cut(s)	1186, 1221
CviAII	CATG	8 cut(s)	109, 304, 451, 542, 613, 766, 865, 1180
CviQI	GTAC	5 cut(s)	62, 77, 173, 961, 1212
DdeI	CTNAG	5 cut(s)	423, 860, 929, 1037, 1155
DpnI	GATC	4 cut(s)	91, 365, 442, 495
DpnII	GATC	4 cut(s)	89, 363, 440, 493
DraI	TTTAAA	2 cut(s)	151, 406
EaeI	YGGCCR	1 cut(s)	831
Eam1104I	CTCTTC	3 cut(s)	16, 109, 783
EarI	CTCTTC	3 cut(s)	16, 109, 783
Eco130I	CCWWGG	6 cut(s)	108, 303, 567, 751, 1112, 1179
Eco32I	GATATC	1 cut(s)	601
Eco57I	CTGAAG	4 cut(s)	39, 396, 1050, 1181
Eco81I	CCTNAGG	1 cut(s)	1037
EcoRII	CCWGG	1 cut(s)	802
EcoRV	GATATC	1 cut(s)	601
EcoT14I	CCWWGG	6 cut(s)	108, 303, 567, 751, 1112, 1179
EcoT22I	ATGCAT	2 cut(s)	24, 327
ErhI	CCWWGG	6 cut(s)	108, 303, 567, 751, 1112, 1179
Esp3I	CGTCTC	1 cut(s)	157
FaeI	CATG	8 cut(s)	112, 307, 454, 545, 616, 769, 868, 1183
FatI	CATG	8 cut(s)	108, 303, 450, 541, 612, 765, 864, 1179
Fnu4HI	GCNGC	8 cut(s)	279, 508, 519, 593, 948, 1062, 1193, 1221
FokI	GGATG	4 cut(s)	9, 194, 382, 1095
Fsp4HI	GCNGC	8 cut(s)	279, 508, 519, 593, 948, 1062, 1193, 1221
FspBI	CTAG	1 cut(s)	1079
GluI	GCNGC	8 cut(s)	279, 508, 519, 593, 948, 1062, 1193, 1221
GsuI	CTGGAG	2 cut(s)	728, 1004
HaeIII	GGCC	1 cut(s)	833
HapII	CCGG	1 cut(s)	706
Hin1II	CATG	8 cut(s)	112, 307, 454, 545, 616, 769, 868, 1183
HindIII	AAGCTT	1 cut(s)	954
HinfI	GANTC	6 cut(s)	479, 622, 694, 741, 871, 1287
HpaII	CCGG	1 cut(s)	706
Hpy166II	GTNNAC	1 cut(s)	892
Hpy188I	TCNGA	5 cut(s)	58, 217, 627, 652, 930
Hpy188III	TCNNGA	4 cut(s)	93, 367, 671, 1305
Hpy8I	GTNNAC	1 cut(s)	892
Hpy99I	CGWCG	1 cut(s)	491
HpyAV	CCTTC	2 cut(s)	153, 281
HpyCH4III	ACNGT	5 cut(s)	299, 501, 691, 722, 1171
HpyCH4IV	ACGT	2 cut(s)	166, 486
HpyF10VI	GCNNNNNNNGC	5 cut(s)	104, 299, 592, 953, 1067
HpyF3I	CTNAG	5 cut(s)	423, 860, 929, 1037, 1155
HpySE526I	ACGT	2 cut(s)	166, 486
Hsp92II	CATG	8 cut(s)	112, 307, 454, 545, 616, 769, 868, 1183
Kzo9I	GATC	4 cut(s)	89, 363, 440, 493
LguI	GCTCTTC	2 cut(s)	16, 783
LmnI	GCTCC	2 cut(s)	583, 753
Lsp1109I	GCAGC	8 cut(s)	290, 505, 519, 604, 959, 1048, 1204, 1207
LweI	GCATC	2 cut(s)	9, 31
MaeI	CTAG	1 cut(s)	1079
MaeII	ACGT	2 cut(s)	166, 486
MaeIII	GTNAC	3 cut(s)	456, 722, 1288
MalI	GATC	4 cut(s)	91, 365, 442, 495
MboI	GATC	4 cut(s)	89, 363, 440, 493
MboII	GAAGA	9 cut(s)	3, 6, 126, 362, 425, 446, 503, 800, 1174
MflI	RGATCY	1 cut(s)	493
MhlI	GDGCHC	1 cut(s)	894
MluCI	AATT	7 cut(s)	341, 417, 574, 876, 883, 1010, 1056
MlyI	GAGTC	2 cut(s)	735, 1296
MmeI	TCCRAC	3 cut(s)	158, 507, 741
MnlI	CCTC	8 cut(s)	110, 141, 205, 224, 805, 924, 1141, 1177
Mph1103I	ATGCAT	2 cut(s)	24, 327
MseI	TTAA	5 cut(s)	150, 177, 405, 942, 1254
MslI	CAYNNNNRTG	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	1070
MspCI	CTTAAG	1 cut(s)	176
MspI	CCGG	1 cut(s)	706
MspR9I	CCNGG	1 cut(s)	804
MvaI	CCWGG	1 cut(s)	804
MwoI	GCNNNNNNNGC	5 cut(s)	104, 299, 592, 953, 1067
NcoI	CCATGG	3 cut(s)	108, 303, 1179
NdeII	GATC	4 cut(s)	89, 363, 440, 493
NlaIII	CATG	8 cut(s)	112, 307, 454, 545, 616, 769, 868, 1183
NlaIV	GGNNCC	5 cut(s)	669, 909, 969, 1043, 1118
NmuCI	GTSAC	1 cut(s)	1288
NsiI	ATGCAT	2 cut(s)	24, 327
NspI	RCATGY	2 cut(s)	545, 769
NspV	TTCGAA	1 cut(s)	223
PaeI	GCATGC	1 cut(s)	769
PciI	ACATGT	1 cut(s)	541
PciSI	GCTCTTC	2 cut(s)	16, 783
PfeI	GAWTC	4 cut(s)	479, 622, 694, 871
PinAI	ACCGGT	1 cut(s)	705
PkrI	GCNGC	8 cut(s)	280, 509, 520, 594, 949, 1063, 1194, 1222
PleI	GAGTC	2 cut(s)	735, 1295
PpsI	GAGTC	2 cut(s)	735, 1295
PscI	ACATGT	1 cut(s)	541
Psp6I	CCWGG	1 cut(s)	802
PspGI	CCWGG	1 cut(s)	802
PspN4I	GGNNCC	5 cut(s)	669, 909, 969, 1043, 1118
PstI	CTGCAG	1 cut(s)	202
PstNI	CAGNNNCTG	1 cut(s)	1209
PsuI	RGATCY	1 cut(s)	493
PvuII	CAGCTG	1 cut(s)	1070
RsaI	GTAC	5 cut(s)	63, 78, 174, 962, 1213
RsaNI	GTAC	5 cut(s)	62, 77, 173, 961, 1212
RseI	CAYNNNNRTG	1 cut(s)	27
SapI	GCTCTTC	2 cut(s)	16, 783
SaqAI	TTAA	5 cut(s)	150, 177, 405, 942, 1254
SatI	GCNGC	8 cut(s)	279, 508, 519, 593, 948, 1062, 1193, 1221
Sau3AI	GATC	4 cut(s)	89, 363, 440, 493
ScaI	AGTACT	1 cut(s)	174
SchI	GAGTC	2 cut(s)	735, 1296
ScrFI	CCNGG	1 cut(s)	804
SduI	GDGCHC	1 cut(s)	894
SfaNI	GCATC	2 cut(s)	9, 31
SfcI	CTRYAG	1 cut(s)	198
SfuI	TTCGAA	1 cut(s)	223
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	3 cut(s)	176, 951, 1303
SmoI	CTYRAG	3 cut(s)	176, 951, 1303
SphI	GCATGC	1 cut(s)	769
Sse9I	AATT	7 cut(s)	341, 417, 574, 876, 883, 1010, 1056
SsiI	CCGC	2 cut(s)	798, 934
SspMI	CTAG	1 cut(s)	1079
StyD4I	CCNGG	1 cut(s)	802
StyI	CCWWGG	6 cut(s)	108, 303, 567, 751, 1112, 1179
TaaI	ACNGT	5 cut(s)	299, 501, 691, 722, 1171
TaiI	ACGT	2 cut(s)	169, 489
TaqI	TCGA	6 cut(s)	17, 223, 489, 603, 702, 1095
TasI	AATT	7 cut(s)	341, 417, 574, 876, 883, 1010, 1056
TatI	WGTACW	3 cut(s)	61, 172, 1211
TfiI	GAWTC	4 cut(s)	479, 622, 694, 871
Tru1I	TTAA	5 cut(s)	150, 177, 405, 942, 1254
Tru9I	TTAA	5 cut(s)	150, 177, 405, 942, 1254
TscAI	CASTG	5 cut(s)	304, 506, 696, 1023, 1210
TseFI	GTSAC	1 cut(s)	1288
TseI	GCWGC	8 cut(s)	278, 507, 518, 592, 947, 1061, 1192, 1220
Tsp45I	GTSAC	1 cut(s)	1288
TspDTI	ATGAA	5 cut(s)	426, 801, 814, 928, 964
TspRI	CASTG	5 cut(s)	304, 506, 696, 1023, 1210
Vha464I	CTTAAG	1 cut(s)	176
VneI	GTGCAC	1 cut(s)	890
XapI	RAATTY	2 cut(s)	876, 883
XceI	RCATGY	2 cut(s)	545, 769
XcmI	CCANNNNNNNNNTGG	2 cut(s)	310, 367
XspI	CTAG	1 cut(s)	1079
ZrmI	AGTACT	1 cut(s)	174
Zsp2I	ATGCAT	2 cut(s)	24, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.