Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004628

Physical Location & Seq

Genomic Coordinates Reverse (-)

68010662 .. 68015462

Gene Structure 4801 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G044910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGAAGAATAAGGAAAATACAAATGCTGCCAGAGTTGAAGAGCCTACTGTTCGAATCACACGAGCACGGGCTAAAGCCTCTGCCACATCAGCAGAGGGCCTTGCCTCCTCAAAATCTCTTGTTAAACAAGGCCAAGGCCAAGGCCAGAAGCGAGCTCTTCCTGCAAATTCCAAACATGGCGCATCAGCTTCTCTAGTTTCCACCATCGGCTTGCAGCACAAAAGAAGGGCAGTGCTTAAAGATGTAACGAATTCAAATGTCGACTCGACTGATGATGCATCTCAACTTCAGCCTGGCAAGCAGTCCAGAAGAGGGCCTGCAAACAAGGTGAAGGTAGCCTCAAATCCAAGTGTTGCTGAAGATTTTCCAATGGCTCAGGATGACATAAAAGCAAAGTTAGCTGAGGAATTATCCAAAATAAGGGTGGCTGAACCACCAGAAAAGTTGCAAGTGAAAGAAGAGCCATTACCCCAGAGCATGTGTCATGCCTTGAGACAACATGGAGGAGCAGACCTAATACAGCATTCCATTAAATCTCCTGAACTTCAGAGGCGGCCCCAAAACAAAGAAGAATATATGGTCTGCGAGAGATTGGGATCCTCAAATGACTTGGACATCGTGGACATTGACGCAAACTTTAAAGATCCTCTAGCATGCAGCTTGTATGCCCCTGATATATACAGTAATATACGGCTTACAGAGATAGAGCGAAGACCATCAACTAATTATATGGAAAACTTGCAGCAAGATATCACTCCAAGCATGCGAGGAATTTTGATTGATTGGCTTGTGGAGGTTTCTGAAGAATATAAGCTGGTTCCTGATACACTATACCTCACTGTGAATCTCATTGATCGCTTTCTCTCACAGAACTTTGTTGAAAAGCAAAGGCTCCAGCTGCTTGGAGTCACTTGCATGTTAATTGCCTCGAAGTATGAAGAAATTGTTGCACCACGAGTGGAAGAATTTTGTCTCATCACGGACAATACTTACTCAAGAGAAGAGGTATTAGAAATGGAGAGTGAAGTACTAAATTTCTTGCACTTCCAGTTATCTGTTCCAACCACGAAAACATTTCTTAGGAGGTTTGTTCAAGCGGCACAAGCTTCTTATAAGGTATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008283 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:2000026 GO:2000038 GO:2000123

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

374

Amino Acids

41.97

Weight (kDa)

6.64

Isoelectric Point (pI)

59.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	225 - 352	1.5e-48	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15570 AT5G11300 AT5G11300 AT5G25380 AT5G25380 AT5G25380 AT5G25380
fragaria_vesca	FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100
malus_domestica	MD08G1137300.v1.1 MD15G1115900.v1.1
prunus_persica	Prupe.1G467200_v2.0.a1
pyrus_communis	pycom08g11590 pycom15g10450
rosa_chinensis	RchiOBHm_Chr6g0312821
rosa_laevigata	RLG00000010295
rosa_multiflora	Rmu_co8351801.1_g000001 Rmu_sc0008049.1_g000007
rosa_roxburghii	Rroxscaffold_7G00156460
rosa_rugosa	Rorug06G0399900 Rorug06G0399900 Rorug06G0399900
rosa_samantha	Rh6AG517000 Rh6BG528400 Rh6CG533100 Rh6DG519600
rosa_wichuraiana	Rw6G044910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1113
AccI	GTMKAC	1 cut(s)	261
AciI	CCGC	2 cut(s)	553, 1097
AclWI	GGATC	3 cut(s)	591, 604, 638
AcsI	RAATTY	5 cut(s)	166, 250, 771, 965, 1033
AcuI	CTGAAG	4 cut(s)	272, 378, 530, 822
AfaI	GTAC	1 cut(s)	1029
AfiI	CCNNNNNNNGG	2 cut(s)	312, 420
AgsI	TTSAA	4 cut(s)	38, 255, 881, 1094
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	7 cut(s)	155, 188, 401, 660, 814, 898, 1106
AluI	AGCT	7 cut(s)	155, 188, 401, 660, 814, 898, 1106
Alw21I	GWGCWC	2 cut(s)	67, 157
Alw26I	GTCTC	2 cut(s)	487, 977
AlwI	GGATC	3 cut(s)	591, 604, 638
AoxI	GGCC	6 cut(s)	97, 130, 136, 142, 314, 554
ApeKI	GCWGC	5 cut(s)	26, 214, 657, 742, 898
ApoI	RAATTY	5 cut(s)	166, 250, 771, 965, 1033
Asp700I	GAANNNNTTC	1 cut(s)	363
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	3 cut(s)	97, 314, 555
AsuHPI	GGTGA	1 cut(s)	340
AsuII	TTCGAA	1 cut(s)	52
BamHI	GGATCC	1 cut(s)	596
BanII	GRGCYC	1 cut(s)	157
BarI	GAAGNNNNNNTAC	2 cut(s)	450, 482
BauI	CACGAG	2 cut(s)	60, 954
BbsI	GAAGAC	1 cut(s)	718
Bbv12I	GWGCWC	2 cut(s)	67, 157
BbvCI	CCTCAGC	1 cut(s)	402
BbvI	GCAGC	5 cut(s)	13, 226, 669, 754, 885
BccI	CCATC	2 cut(s)	212, 724
BceAI	ACGGC	1 cut(s)	707
BciT130I	CCWGG	1 cut(s)	294
BcoDI	GTCTC	2 cut(s)	487, 977
BfaI	CTAG	2 cut(s)	194, 650
BisI	GCNGC	7 cut(s)	27, 215, 554, 658, 743, 899, 1098
BlsI	GCNGC	7 cut(s)	28, 216, 555, 659, 744, 900, 1099
BmcAI	AGTACT	1 cut(s)	1029
Bme1390I	CCNGG	1 cut(s)	294
BmgT120I	GGNCC	3 cut(s)	97, 314, 555
BmiI	GGNNCC	4 cut(s)	557, 598, 819, 893
BmrFI	CCNGG	1 cut(s)	294
BmsI	GCATC	3 cut(s)	191, 265, 287
BpiI	GAAGAC	1 cut(s)	718
BpmI	CTGGAG	1 cut(s)	878
Bpu10I	CCTNAGC	2 cut(s)	375, 402
Bpu14I	TTCGAA	1 cut(s)	52
BpuEI	CTTGAG	2 cut(s)	511, 979
BsaBI	GATNNNNATC	1 cut(s)	595
BsaJI	CCNNGG	2 cut(s)	133, 139
Bsc4I	CCNNNNNNNGG	2 cut(s)	312, 420
Bse1I	ACTGG	1 cut(s)	1048
Bse8I	GATNNNNATC	1 cut(s)	595
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	2 cut(s)	133, 139
BseGI	GGATG	1 cut(s)	385
BseJI	GATNNNNATC	1 cut(s)	595
BseLI	CCNNNNNNNGG	2 cut(s)	312, 420
BseMII	CTCAG	2 cut(s)	389, 393
BseNI	ACTGG	1 cut(s)	1048
BseRI	GAGGAG	2 cut(s)	97, 519
BseXI	GCAGC	5 cut(s)	13, 226, 669, 754, 885
BshFI	GGCC	6 cut(s)	99, 132, 138, 144, 316, 556
BsiHKAI	GWGCWC	2 cut(s)	67, 157
BslI	CCNNNNNNNGG	2 cut(s)	312, 420
BsmAI	GTCTC	2 cut(s)	487, 977
BsmI	GAATGC	1 cut(s)	523
BsnI	GGCC	6 cut(s)	99, 132, 138, 144, 316, 556
Bsp119I	TTCGAA	1 cut(s)	52
Bsp1286I	GDGCHC	2 cut(s)	67, 157
Bsp143I	GATC	3 cut(s)	596, 643, 853
BspACI	CCGC	2 cut(s)	553, 1097
BspANI	GGCC	6 cut(s)	99, 132, 138, 144, 316, 556
BspCNI	CTCAG	2 cut(s)	388, 394
BspLI	GGNNCC	4 cut(s)	557, 598, 819, 893
BspPI	GGATC	3 cut(s)	591, 604, 638
BspQI	GCTCTTC	3 cut(s)	33, 162, 453
BspT104I	TTCGAA	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	1048
BssECI	CCNNGG	2 cut(s)	133, 139
BssMI	GATC	3 cut(s)	596, 643, 853
BssSI	CACGAG	2 cut(s)	60, 954
BssT1I	CCWWGG	2 cut(s)	133, 139
Bst2BI	CACGAG	2 cut(s)	60, 954
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	3 cut(s)	49, 683, 841
Bst6I	CTCTTC	5 cut(s)	33, 162, 304, 453, 996
BstBI	TTCGAA	1 cut(s)	52
BstC8I	GCNNGC	6 cut(s)	153, 212, 299, 318, 655, 764
BstDEI	CTNAG	3 cut(s)	375, 402, 1079
BstF5I	GGATG	1 cut(s)	385
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	3 cut(s)	599, 646, 856
BstMAI	GTCTC	2 cut(s)	487, 977
BstMBI	GATC	3 cut(s)	596, 643, 853
BstMWI	GCNNNNNNNGC	6 cut(s)	89, 161, 298, 398, 898, 1103
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	4 cut(s)	481, 657, 766, 919
BstSCI	CCNGG	1 cut(s)	292
BstV1I	GCAGC	5 cut(s)	13, 226, 669, 754, 885
BstV2I	GAAGAC	1 cut(s)	718
BstX2I	RGATCY	2 cut(s)	596, 643
BstXI	CCANNNNNNTGG	1 cut(s)	902
BstYI	RGATCY	2 cut(s)	596, 643
BsuRI	GGCC	6 cut(s)	99, 132, 138, 144, 316, 556
BtsCI	GGATG	1 cut(s)	385
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	2 cut(s)	237, 837
Cac8I	GCNNGC	6 cut(s)	153, 212, 299, 318, 655, 764
CfoI	GCGC	1 cut(s)	182
Cfr13I	GGNCC	3 cut(s)	97, 314, 555
CseI	GACGC	1 cut(s)	638
Csp6I	GTAC	1 cut(s)	1028
CviAII	CATG	7 cut(s)	176, 478, 485, 500, 654, 763, 916
CviQI	GTAC	1 cut(s)	1028
DdeI	CTNAG	3 cut(s)	375, 402, 1079
DpnI	GATC	3 cut(s)	598, 645, 855
DpnII	GATC	3 cut(s)	596, 643, 853
DraI	TTTAAA	1 cut(s)	640
Eam1104I	CTCTTC	5 cut(s)	33, 162, 304, 453, 996
EarI	CTCTTC	5 cut(s)	33, 162, 304, 453, 996
Ecl136II	GAGCTC	1 cut(s)	155
Eco130I	CCWWGG	2 cut(s)	133, 139
Eco24I	GRGCYC	1 cut(s)	157
Eco32I	GATATC	1 cut(s)	751
Eco53kI	GAGCTC	1 cut(s)	155
Eco57I	CTGAAG	4 cut(s)	272, 378, 530, 822
EcoICRI	GAGCTC	1 cut(s)	155
EcoO109I	RGGNCCY	2 cut(s)	97, 314
EcoRI	GAATTC	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	292
EcoRV	GATATC	1 cut(s)	751
EcoT14I	CCWWGG	2 cut(s)	133, 139
EcoT22I	ATGCAT	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	157
ErhI	CCWWGG	2 cut(s)	133, 139
FaeI	CATG	7 cut(s)	179, 481, 488, 503, 657, 766, 919
FatI	CATG	7 cut(s)	175, 477, 484, 499, 653, 762, 915
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	7 cut(s)	27, 215, 554, 658, 743, 899, 1098
FokI	GGATG	1 cut(s)	392
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	7 cut(s)	27, 215, 554, 658, 743, 899, 1098
FspBI	CTAG	2 cut(s)	194, 650
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	7 cut(s)	27, 215, 554, 658, 743, 899, 1098
GsuI	CTGGAG	1 cut(s)	878
HaeIII	GGCC	6 cut(s)	99, 132, 138, 144, 316, 556
HgaI	GACGC	1 cut(s)	638
HhaI	GCGC	1 cut(s)	182
Hin1II	CATG	7 cut(s)	179, 481, 488, 503, 657, 766, 919
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HindIII	AAGCTT	1 cut(s)	1104
HinfI	GANTC	4 cut(s)	54, 263, 844, 906
HphI	GGTGA	1 cut(s)	340
Hpy166II	GTNNAC	2 cut(s)	262, 622
Hpy188I	TCNGA	2 cut(s)	549, 802
Hpy188III	TCNNGA	5 cut(s)	306, 377, 539, 821, 996
Hpy8I	GTNNAC	2 cut(s)	262, 622
HpyAV	CCTTC	2 cut(s)	219, 325
HpyCH4III	ACNGT	3 cut(s)	49, 683, 841
HpyF10VI	GCNNNNNNNGC	6 cut(s)	89, 161, 298, 398, 898, 1103
HpyF3I	CTNAG	3 cut(s)	375, 402, 1079
Hsp92II	CATG	7 cut(s)	179, 481, 488, 503, 657, 766, 919
HspAI	GCGC	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	596, 643, 853
LguI	GCTCTTC	3 cut(s)	33, 162, 453
LmnI	GCTCC	2 cut(s)	506, 897
Lsp1109I	GCAGC	5 cut(s)	13, 226, 669, 754, 885
LweI	GCATC	3 cut(s)	191, 265, 287
MaeI	CTAG	2 cut(s)	194, 650
MaeIII	GTNAC	2 cut(s)	244, 907
MalI	GATC	3 cut(s)	598, 645, 855
MboI	GATC	3 cut(s)	596, 643, 853
MflI	RGATCY	2 cut(s)	596, 643
MhlI	GDGCHC	2 cut(s)	67, 157
MluCI	AATT	9 cut(s)	166, 250, 407, 724, 771, 921, 942, 965, 1033
MlyI	GAGTC	2 cut(s)	257, 915
MmeI	TCCRAC	1 cut(s)	1085
Mph1103I	ATGCAT	1 cut(s)	280
MroXI	GAANNNNTTC	1 cut(s)	363
MseI	TTAA	5 cut(s)	123, 237, 531, 639, 920
MslI	CAYNNNNRTG	1 cut(s)	914
MspA1I	CMGCKG	1 cut(s)	898
MspR9I	CCNGG	1 cut(s)	294
Mva1269I	GAATGC	1 cut(s)	523
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	6 cut(s)	89, 161, 298, 398, 898, 1103
NdeII	GATC	3 cut(s)	596, 643, 853
NlaIII	CATG	7 cut(s)	179, 481, 488, 503, 657, 766, 919
NlaIV	GGNNCC	4 cut(s)	557, 598, 819, 893
NmuCI	GTSAC	1 cut(s)	907
NsiI	ATGCAT	1 cut(s)	280
NspI	RCATGY	4 cut(s)	481, 657, 766, 919
NspV	TTCGAA	1 cut(s)	52
PaeI	GCATGC	2 cut(s)	657, 766
PciSI	GCTCTTC	3 cut(s)	33, 162, 453
PcsI	WCGNNNNNNNCGW	1 cut(s)	58
PctI	GAATGC	1 cut(s)	523
PdmI	GAANNNNTTC	1 cut(s)	363
PfeI	GAWTC	2 cut(s)	54, 844
PkrI	GCNGC	7 cut(s)	28, 216, 555, 659, 744, 900, 1099
PleI	GAGTC	2 cut(s)	257, 914
PpsI	GAGTC	2 cut(s)	257, 914
PsiI	TTATAA	1 cut(s)	1113
Psp124BI	GAGCTC	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	4 cut(s)	557, 598, 819, 893
PspPI	GGNCC	3 cut(s)	97, 314, 555
PsuI	RGATCY	2 cut(s)	596, 643
PvuII	CAGCTG	1 cut(s)	898
RsaI	GTAC	1 cut(s)	1029
RsaNI	GTAC	1 cut(s)	1028
RseI	CAYNNNNRTG	1 cut(s)	914
SacI	GAGCTC	1 cut(s)	157
SalI	GTCGAC	1 cut(s)	260
SapI	GCTCTTC	3 cut(s)	33, 162, 453
SaqAI	TTAA	5 cut(s)	123, 237, 531, 639, 920
SatI	GCNGC	7 cut(s)	27, 215, 554, 658, 743, 899, 1098
Sau3AI	GATC	3 cut(s)	596, 643, 853
Sau96I	GGNCC	3 cut(s)	97, 314, 555
ScaI	AGTACT	1 cut(s)	1029
SchI	GAGTC	2 cut(s)	257, 915
ScrFI	CCNGG	1 cut(s)	294
SduI	GDGCHC	2 cut(s)	67, 157
SfaNI	GCATC	3 cut(s)	191, 265, 287
SfuI	TTCGAA	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	914
SmlI	CTYRAG	2 cut(s)	490, 994
SmoI	CTYRAG	2 cut(s)	490, 994
SphI	GCATGC	2 cut(s)	657, 766
Sse9I	AATT	9 cut(s)	166, 250, 407, 724, 771, 921, 942, 965, 1033
SsiI	CCGC	2 cut(s)	553, 1097
SspMI	CTAG	2 cut(s)	194, 650
SstI	GAGCTC	1 cut(s)	157
StyD4I	CCNGG	1 cut(s)	292
StyI	CCWWGG	2 cut(s)	133, 139
TaaI	ACNGT	3 cut(s)	49, 683, 841
TaqI	TCGA	4 cut(s)	52, 261, 266, 929
TasI	AATT	9 cut(s)	166, 250, 407, 724, 771, 921, 942, 965, 1033
TatI	WGTACW	1 cut(s)	1027
TauI	GCSGC	2 cut(s)	556, 1100
TfiI	GAWTC	2 cut(s)	54, 844
Tru1I	TTAA	5 cut(s)	123, 237, 531, 639, 920
Tru9I	TTAA	5 cut(s)	123, 237, 531, 639, 920
TscAI	CASTG	2 cut(s)	237, 844
TseFI	GTSAC	1 cut(s)	907
TseI	GCWGC	5 cut(s)	26, 214, 657, 742, 898
Tsp45I	GTSAC	1 cut(s)	907
TspDTI	ATGAA	2 cut(s)	17, 951
TspGWI	ACGGA	1 cut(s)	995
TspRI	CASTG	2 cut(s)	237, 844
XapI	RAATTY	5 cut(s)	166, 250, 771, 965, 1033
XceI	RCATGY	4 cut(s)	481, 657, 766, 919
XcmI	CCANNNNNNNNNTGG	1 cut(s)	421
XmiI	GTMKAC	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	363
XspI	CTAG	2 cut(s)	194, 650
ZrmI	AGTACT	1 cut(s)	1029
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.