FvH4_2g30100

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
23304204 .. 23308821
4618 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g30100.t6

Sequence Viewer

Length: 1455 bp
ATGAATAAGGAGAATAAAAATGCTGCTAGAGTTGAAGAGCCTATTGTTCGAATCACACGAGCACGGGCTAAAGCCTTTGGCATATCAGGGGAGGTGGCTGGCCCTTCAAAACCTGTGGTTAAACAAGGCCAGAAGCGAGCTCTTCGAGCAAATTCCAAAACTGGGGTGTCAGATGAGAACAAAGCTTCTGTAGTTTCCACCATCGGCTTGCAGCATAAAAGAAGGGCAGTGCTTAAAGATGTTTCGAATTCAAATGTGGACTGGATTGATGCATCTCAAGTTCAGGCTGCAAAGCAGGCCAGAAGAGGGCCCGGAAAGAATGTGAAGGTAGCCTCGAATTCAAGTGTTTCTGAAGATTTTCCAATTGCTCAAGATGACATAAAGACTATGTTAGCTGAAGAATTATCCAAAATAAGGGTGGCAGAGCCACAAGAGAAGTTAGAAGTGAAAGAAGAGCCAGTAACCCTGAGCATGCGTCATGCCTTGAGACAACATGGAGGAGCAGATGTAATGCTTACAGTACAGCATTCCATTAAATCTGCTGAACTTCAGATGCCTCAAAAGAAAGAAGAAAATGTGATTGGCGAGAGATTGGGATCCTCAAACGACTTGCACATTGTAGACATTGATGCAAACTTAAAAGATCCTCTAGCATGCAGCTTGTATGCCCCTGATATATACAGTAATATACAGCTTACAGAGATAGAGCGAAGACCATCATCTAATTATATGGAAAGCTTGCAGCAAGATATCTCTTCTAGCATGCGAGGAGTATTGATTGATTGGCTTGTGGAGGTTTCTGAAGAATATAAGCTGGTTCCTGATACACTTTACCTGACAGTGAATCTCATCGATCGGTTCCTCTCACATAACTTGGTTCCAAAACAAAGGCTCCAGCTGCTTGGAGTCACTTGCATGTTAATTGCCTCGAAGTATGAAGAAATTGTTGCACCACGAGTAGAAGAATTTTGTCTCATCACAGACAATACTTACTCAAGAGAAGAGGTATTAGACATGGAAAGTGAAGTACTAAATTTCTTGCACTTCCAGTTATCTGTTCCAACCACAAAAACATTTCTTAGGAGGTTTGTTCAAGCGGCACAGGCTTCTTATAAGGCTCCTTGTGTTGAACTAGAGTTCTTGGCAAATTATTTAGCAGAGTTAACTATTGTTGAATATGGCTTCTTGAAGTTCCTACCTTCCGTCATAGCTGCCTCTGCTGTGTTCCTTGCCAGATGGACACTCAATCAATCAGACCATCCATGGACCCCAACTTTAGAACACTATACCTCTTACAAAACATCACAGCTCCAAACTTCAGTTATTGCACTTGAAGATTTGCAATTGAACACCAAAGGCTGTTGCCTGAATGCTATACGCGAGAAGTATAGACACCAGAAGTTCAAATGCGTGGCTACTTTGACCTCTAAACAGAAGGTTGGTTCACTCTTCTGA

Protein Analysis

485

Amino Acids

54.34

Weight (kDa)

7.61

Isoelectric Point (pI)

48.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 225 - 352 1.1e-47 Cyclin, N-terminal domain
Cyclin_C PF02984 354 - 467 1.4e-33 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1113
AccI GTMKAC 1 cut(s) 621
AccII CGCG 1 cut(s) 1380
AciI CCGC 1 cut(s) 1097
AclWI GGATC 3 cut(s) 591, 604, 638
AcsI RAATTY 5 cut(s) 151, 247, 337, 965, 1033
AcuI CTGAAG 5 cut(s) 372, 417, 533, 822, 1302
AfaI GTAC 2 cut(s) 522, 1029
AfiI CCNNNNNNNGG 3 cut(s) 162, 306, 414
AjuI GAANNNNNNNTTGG 2 cut(s) 564, 596
Alw21I GWGCWC 2 cut(s) 64, 142
Alw26I GTCTC 2 cut(s) 481, 977
AlwI GGATC 3 cut(s) 591, 604, 638
AoxI GGCC 4 cut(s) 100, 127, 297, 308
ApaI GGGCCC 1 cut(s) 312
ApeKI GCWGC 7 cut(s) 23, 211, 287, 657, 742, 898, 1211
ApoI RAATTY 5 cut(s) 151, 247, 337, 965, 1033
Asp700I GAANNNNTTC 1 cut(s) 357
AspS9I GGNCC 4 cut(s) 101, 308, 309, 1266
AsuC2I CCSGG 1 cut(s) 312
AsuII TTCGAA 2 cut(s) 49, 245
AvaII GGWCC 1 cut(s) 1266
BaeGI GKGCMC 1 cut(s) 312
BamHI GGATCC 1 cut(s) 596
BanII GRGCYC 2 cut(s) 142, 312
BauI CACGAG 2 cut(s) 57, 954
BbsI GAAGAC 1 cut(s) 718
Bbv12I GWGCWC 2 cut(s) 64, 142
BbvI GCAGC 7 cut(s) 10, 223, 274, 669, 754, 885, 1198
BccI CCATC 4 cut(s) 209, 724, 1230, 1266
BcnI CCSGG 1 cut(s) 312
BcoDI GTCTC 2 cut(s) 481, 977
BfaI CTAG 4 cut(s) 27, 650, 759, 1133
BfmI CTRYAG 1 cut(s) 189
BisI GCNGC 8 cut(s) 24, 212, 288, 658, 743, 899, 1098, 1212
BlsI GCNGC 8 cut(s) 25, 213, 289, 659, 744, 900, 1099, 1213
BmcAI AGTACT 1 cut(s) 1029
Bme1390I CCNGG 1 cut(s) 312
Bme18I GGWCC 1 cut(s) 1266
BmgT120I GGNCC 4 cut(s) 101, 308, 309, 1266
BmiI GGNNCC 8 cut(s) 310, 598, 819, 860, 879, 893, 1119, 1268
BmrFI CCNGG 1 cut(s) 312
BmrI ACTGGG 1 cut(s) 171
BmsI GCATC 4 cut(s) 259, 281, 543, 619
BmuI ACTGGG 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 718
BpmI CTGGAG 1 cut(s) 878
Bpu10I CCTNAGC 1 cut(s) 467
Bpu14I TTCGAA 2 cut(s) 49, 245
BpuEI CTTGAG 4 cut(s) 261, 354, 505, 979
BpuMI CCSGG 1 cut(s) 312
Bsa29I ATCGAT 1 cut(s) 852
BsaBI GATNNNNATC 1 cut(s) 595
BsaJI CCNNGG 1 cut(s) 1262
BsaXI ACNNNNNCTCC 4 cut(s) 492, 522, 876, 906
Bsc4I CCNNNNNNNGG 3 cut(s) 162, 306, 414
Bse1I ACTGG 4 cut(s) 166, 266, 458, 1048
Bse8I GATNNNNATC 1 cut(s) 595
BseCI ATCGAT 1 cut(s) 852
BseDI CCNNGG 1 cut(s) 1262
BseGI GGATG 1 cut(s) 1258
BseJI GATNNNNATC 1 cut(s) 595
BseLI CCNNNNNNNGG 3 cut(s) 162, 306, 414
BseMII CTCAG 1 cut(s) 458
BseNI ACTGG 4 cut(s) 166, 266, 458, 1048
BseRI GAGGAG 2 cut(s) 513, 783
BseSI GKGCMC 1 cut(s) 312
BseXI GCAGC 7 cut(s) 10, 223, 274, 669, 754, 885, 1198
Bsh1236I CGCG 1 cut(s) 1380
Bsh1285I CGRYCG 1 cut(s) 856
BshFI GGCC 4 cut(s) 102, 129, 299, 310
BshVI ATCGAT 1 cut(s) 852
BsiEI CGRYCG 1 cut(s) 856
BsiHKAI GWGCWC 2 cut(s) 64, 142
BsiSI CCGG 1 cut(s) 312
BslI CCNNNNNNNGG 3 cut(s) 162, 306, 414
BsmAI GTCTC 2 cut(s) 481, 977
BsmI GAATGC 2 cut(s) 526, 1375
BsnI GGCC 4 cut(s) 102, 129, 299, 310
Bsp119I TTCGAA 2 cut(s) 49, 245
Bsp120I GGGCCC 1 cut(s) 308
Bsp1286I GDGCHC 3 cut(s) 64, 142, 312
Bsp143I GATC 3 cut(s) 596, 643, 853
Bsp19I CCATGG 1 cut(s) 1262
BspACI CCGC 1 cut(s) 1097
BspANI GGCC 4 cut(s) 102, 129, 299, 310
BspCNI CTCAG 1 cut(s) 459
BspDI ATCGAT 1 cut(s) 852
BspFNI CGCG 1 cut(s) 1380
BspLI GGNNCC 8 cut(s) 310, 598, 819, 860, 879, 893, 1119, 1268
BspPI GGATC 3 cut(s) 591, 604, 638
BspQI GCTCTTC 3 cut(s) 30, 147, 447
BspT104I TTCGAA 2 cut(s) 49, 245
BsrI ACTGG 4 cut(s) 166, 266, 458, 1048
BssECI CCNNGG 1 cut(s) 1262
BssMI GATC 3 cut(s) 596, 643, 853
BssSI CACGAG 2 cut(s) 57, 954
BssT1I CCWWGG 1 cut(s) 1262
Bst2BI CACGAG 2 cut(s) 57, 954
Bst4CI ACNGT 3 cut(s) 520, 683, 841
Bst6I CTCTTC 6 cut(s) 30, 147, 298, 447, 760, 996
BstBI TTCGAA 2 cut(s) 49, 245
BstC8I GCNNGC 8 cut(s) 100, 138, 209, 297, 473, 655, 740, 764
BstDEI CTNAG 2 cut(s) 467, 1079
BstDSI CCRYGG 1 cut(s) 1262
BstF5I GGATG 1 cut(s) 1258
BstFNI CGCG 1 cut(s) 1380
BstKTI GATC 3 cut(s) 599, 646, 856
BstMAI GTCTC 2 cut(s) 481, 977
BstMBI GATC 3 cut(s) 596, 643, 853
BstMCI CGRYCG 1 cut(s) 856
BstMWI GCNNNNNNNGC 5 cut(s) 146, 296, 898, 1103, 1217
BstNSI RCATGY 4 cut(s) 475, 657, 766, 919
BstSCI CCNGG 1 cut(s) 310
BstSFI CTRYAG 1 cut(s) 189
BstSLI GKGCMC 1 cut(s) 312
BstUI CGCG 1 cut(s) 1380
BstV1I GCAGC 7 cut(s) 10, 223, 274, 669, 754, 885, 1198
BstV2I GAAGAC 1 cut(s) 718
BstX2I RGATCY 2 cut(s) 596, 643
BstXI CCANNNNNNTGG 1 cut(s) 902
BstYI RGATCY 2 cut(s) 596, 643
Bsu15I ATCGAT 1 cut(s) 852
BsuRI GGCC 4 cut(s) 102, 129, 299, 310
BsuTUI ATCGAT 1 cut(s) 852
BtgI CCRYGG 1 cut(s) 1262
BtsCI GGATG 1 cut(s) 1258
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 2 cut(s) 234, 846
Cac8I GCNNGC 8 cut(s) 100, 138, 209, 297, 473, 655, 740, 764
Cfr13I GGNCC 4 cut(s) 101, 308, 309, 1266
ClaI ATCGAT 1 cut(s) 852
CseI GACGC 1 cut(s) 464
Csp6I GTAC 2 cut(s) 521, 1028
CspCI CAANNNNNGTGG 2 cut(s) 96, 131
CviAII CATG 8 cut(s) 472, 479, 494, 654, 763, 916, 1015, 1263
CviQI GTAC 2 cut(s) 521, 1028
DdeI CTNAG 2 cut(s) 467, 1079
DpnI GATC 3 cut(s) 598, 645, 855
DpnII GATC 3 cut(s) 596, 643, 853
Eam1104I CTCTTC 6 cut(s) 30, 147, 298, 447, 760, 996
EarI CTCTTC 6 cut(s) 30, 147, 298, 447, 760, 996
Ecl136II GAGCTC 1 cut(s) 140
Eco130I CCWWGG 1 cut(s) 1262
Eco24I GRGCYC 2 cut(s) 142, 312
Eco32I GATATC 1 cut(s) 751
Eco47I GGWCC 1 cut(s) 1266
Eco53kI GAGCTC 1 cut(s) 140
Eco57I CTGAAG 5 cut(s) 372, 417, 533, 822, 1302
EcoICRI GAGCTC 1 cut(s) 140
EcoO109I RGGNCCY 1 cut(s) 308
EcoRI GAATTC 2 cut(s) 247, 337
EcoRV GATATC 1 cut(s) 751
EcoT14I CCWWGG 1 cut(s) 1262
EcoT22I ATGCAT 1 cut(s) 274
EcoT38I GRGCYC 2 cut(s) 142, 312
ErhI CCWWGG 1 cut(s) 1262
FaeI CATG 8 cut(s) 475, 482, 497, 657, 766, 919, 1018, 1266
FatI CATG 8 cut(s) 471, 478, 493, 653, 762, 915, 1014, 1262
FblI GTMKAC 1 cut(s) 621
Fnu4HI GCNGC 8 cut(s) 24, 212, 288, 658, 743, 899, 1098, 1212
FokI GGATG 1 cut(s) 1245
FriOI GRGCYC 2 cut(s) 142, 312
Fsp4HI GCNGC 8 cut(s) 24, 212, 288, 658, 743, 899, 1098, 1212
FspBI CTAG 4 cut(s) 27, 650, 759, 1133
GluI GCNGC 8 cut(s) 24, 212, 288, 658, 743, 899, 1098, 1212
GsuI CTGGAG 1 cut(s) 878
HaeIII GGCC 4 cut(s) 102, 129, 299, 310
HapII CCGG 1 cut(s) 312
HgaI GACGC 1 cut(s) 464
Hin1II CATG 8 cut(s) 475, 482, 497, 657, 766, 919, 1018, 1266
HincII GTYRAC 1 cut(s) 1164
HindII GTYRAC 1 cut(s) 1164
HindIII AAGCTT 2 cut(s) 183, 736
HinfI GANTC 3 cut(s) 51, 844, 906
HpaI GTTAAC 1 cut(s) 1164
HpaII CCGG 1 cut(s) 312
Hpy166II GTNNAC 4 cut(s) 259, 622, 1164, 1445
Hpy188I TCNGA 6 cut(s) 172, 352, 552, 802, 1255, 1454
Hpy188III TCNNGA 4 cut(s) 371, 821, 996, 1186
Hpy8I GTNNAC 4 cut(s) 259, 622, 1164, 1445
HpyAV CCTTC 5 cut(s) 114, 216, 319, 1209, 1429
HpyCH4III ACNGT 3 cut(s) 520, 683, 841
HpyF10VI GCNNNNNNNGC 5 cut(s) 146, 296, 898, 1103, 1217
HpyF3I CTNAG 2 cut(s) 467, 1079
Hsp92II CATG 8 cut(s) 475, 482, 497, 657, 766, 919, 1018, 1266
KspAI GTTAAC 1 cut(s) 1164
Kzo9I GATC 3 cut(s) 596, 643, 853
LguI GCTCTTC 3 cut(s) 30, 147, 447
LmnI GCTCC 4 cut(s) 500, 897, 1123, 1314
Lsp1109I GCAGC 7 cut(s) 10, 223, 274, 669, 754, 885, 1198
LweI GCATC 4 cut(s) 259, 281, 543, 619
MaeI CTAG 4 cut(s) 27, 650, 759, 1133
MaeIII GTNAC 2 cut(s) 460, 907
MalI GATC 3 cut(s) 598, 645, 855
MboI GATC 3 cut(s) 596, 643, 853
MfeI CAATTG 2 cut(s) 363, 1343
MflI RGATCY 2 cut(s) 596, 643
MhlI GDGCHC 3 cut(s) 64, 142, 312
MlyI GAGTC 1 cut(s) 915
MmeI TCCRAC 1 cut(s) 1085
Mph1103I ATGCAT 1 cut(s) 274
MroXI GAANNNNTTC 1 cut(s) 357
MseI TTAA 6 cut(s) 120, 234, 534, 638, 920, 1163
MslI CAYNNNNRTG 1 cut(s) 914
MspA1I CMGCKG 1 cut(s) 898
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 312
MunI CAATTG 2 cut(s) 363, 1343
Mva1269I GAATGC 2 cut(s) 526, 1375
MvnI CGCG 1 cut(s) 1380
MwoI GCNNNNNNNGC 5 cut(s) 146, 296, 898, 1103, 1217
NciI CCSGG 1 cut(s) 312
NcoI CCATGG 1 cut(s) 1262
NdeII GATC 3 cut(s) 596, 643, 853
NlaIII CATG 8 cut(s) 475, 482, 497, 657, 766, 919, 1018, 1266
NlaIV GGNNCC 8 cut(s) 310, 598, 819, 860, 879, 893, 1119, 1268
NmuCI GTSAC 1 cut(s) 907
NsiI ATGCAT 1 cut(s) 274
NspI RCATGY 4 cut(s) 475, 657, 766, 919
NspV TTCGAA 2 cut(s) 49, 245
PaeI GCATGC 3 cut(s) 475, 657, 766
PciSI GCTCTTC 3 cut(s) 30, 147, 447
PcsI WCGNNNNNNNCGW 1 cut(s) 55
PctI GAATGC 2 cut(s) 526, 1375
PdmI GAANNNNTTC 1 cut(s) 357
PfeI GAWTC 2 cut(s) 51, 844
PkrI GCNGC 8 cut(s) 25, 213, 289, 659, 744, 900, 1099, 1213
Ple19I CGATCG 1 cut(s) 856
PleI GAGTC 1 cut(s) 914
PpsI GAGTC 1 cut(s) 914
PsiI TTATAA 1 cut(s) 1113
Psp124BI GAGCTC 1 cut(s) 142
PspN4I GGNNCC 8 cut(s) 310, 598, 819, 860, 879, 893, 1119, 1268
PspOMI GGGCCC 1 cut(s) 308
PspPI GGNCC 4 cut(s) 101, 308, 309, 1266
PsuI RGATCY 2 cut(s) 596, 643
PvuI CGATCG 1 cut(s) 856
PvuII CAGCTG 1 cut(s) 898
RsaI GTAC 2 cut(s) 522, 1029
RsaNI GTAC 2 cut(s) 521, 1028
RseI CAYNNNNRTG 1 cut(s) 914
SacI GAGCTC 1 cut(s) 142
SapI GCTCTTC 3 cut(s) 30, 147, 447
SaqAI TTAA 6 cut(s) 120, 234, 534, 638, 920, 1163
SatI GCNGC 8 cut(s) 24, 212, 288, 658, 743, 899, 1098, 1212
Sau3AI GATC 3 cut(s) 596, 643, 853
Sau96I GGNCC 4 cut(s) 101, 308, 309, 1266
ScaI AGTACT 1 cut(s) 1029
SchI GAGTC 1 cut(s) 915
ScrFI CCNGG 1 cut(s) 312
SduI GDGCHC 3 cut(s) 64, 142, 312
SfaNI GCATC 4 cut(s) 259, 281, 543, 619
SfcI CTRYAG 1 cut(s) 189
SfuI TTCGAA 2 cut(s) 49, 245
SinI GGWCC 1 cut(s) 1266
SmiMI CAYNNNNRTG 1 cut(s) 914
SmlI CTYRAG 4 cut(s) 276, 369, 484, 994
SmoI CTYRAG 4 cut(s) 276, 369, 484, 994
SphI GCATGC 3 cut(s) 475, 657, 766
SsiI CCGC 1 cut(s) 1097
SspMI CTAG 4 cut(s) 27, 650, 759, 1133
SstI GAGCTC 1 cut(s) 142
StyD4I CCNGG 1 cut(s) 310
StyI CCWWGG 1 cut(s) 1262
TaaI ACNGT 3 cut(s) 520, 683, 841
TaqI TCGA 6 cut(s) 49, 145, 245, 335, 852, 929
TatI WGTACW 2 cut(s) 520, 1027
TauI GCSGC 1 cut(s) 1100
TfiI GAWTC 2 cut(s) 51, 844
Tru1I TTAA 6 cut(s) 120, 234, 534, 638, 920, 1163
Tru9I TTAA 6 cut(s) 120, 234, 534, 638, 920, 1163
TscAI CASTG 2 cut(s) 234, 846
TseFI GTSAC 1 cut(s) 907
TseI GCWGC 7 cut(s) 23, 211, 287, 657, 742, 898, 1211
Tsp45I GTSAC 1 cut(s) 907
TspDTI ATGAA 2 cut(s) 17, 951
TspGWI ACGGA 1 cut(s) 1192
TspRI CASTG 2 cut(s) 234, 846
VpaK11BI GGWCC 1 cut(s) 1266
XapI RAATTY 5 cut(s) 151, 247, 337, 965, 1033
XceI RCATGY 4 cut(s) 475, 657, 766, 919
XcmI CCANNNNNNNNNTGG 1 cut(s) 415
XmiI GTMKAC 1 cut(s) 621
XmnI GAANNNNTTC 1 cut(s) 357
XspI CTAG 4 cut(s) 27, 650, 759, 1133
ZrmI AGTACT 1 cut(s) 1029
Zsp2I ATGCAT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.