Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004628

Physical Location & Seq

Genomic Coordinates Reverse (-)

9802212 .. 9805526

Gene Structure 3315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g11590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGAATAAGGAAAATGCAAATGCTGCCAAAGTTGAAGACCCTAATGTCCGAATCACAAGAGCACGGTCTAAAGCCTTTGGCGCATCCAGTGAGGAACTCTCCTCCTCGAAACTTTTCATTAAACAAGATCAGAAGCGTGGTCTTCGAGCGATTTCCAAAAGAGCAGCATCAGATGAGAACAAAGCATCTGCAATTGCTAATGTTGGCTTGCAGCATAAAAGAAGGGCAGTGCTTAAGGATGTAGGAAACATCACCTCTGAAAGTTCATATGTTAATTGCACTGATGCATCTCAGATTCAGACTAACAAGCAGGCTAGAAGAGGACTTGGAAAGAATGTTAAGGTGGCCTCAACTGTCTCTGAAGCAATTCCAATAATTCAAGACGACGTAAAAGCAAAGTTAGCTGAGGAATTATCCAAAATAAGGGTGGCAGAACCTTTAGAGCCCACTCTACCAAAAGAGCCAGTACCCCAGGGTATGTGTCATACCTTGGGACAACATAGAGGAGCAGATTTAATGCTTACAATACAGGCTCCCGCCGAATCTGCTGAACTTTGGAACCCCCAAAAGAAAGGTATATTTTATCTTCTTAAACTGACTAGTTTTTCGTGCCTGAGCCTATACTTTGTTAGAGTAGCGCGAAGACCATCAACTGATTATATGGAAAGATTGCAGCAGGATATCACTCCCAGCATGCGAGGAATTTTGATTGATTGGCTTGTGGAGGGCATCCATGCTAATCTCTTCTTAATAGGGATACTGAAAAACCTGGACTTCAGTCCCGAAGTTTCTGAAGAATATAAGCTGGTTCCAGATACACTTTACCTCACAGTAAATCTCATTGATCGGTTTCTCTCTCAAAATTATATTGAAAAGCAAAGGCTCCAGCTGCTTGGAGTCACTTGCATGTTAATTGCCTCGAAGTATGAAGAAATATGTGCACCGCAAGTGGAAGAATTTTGCATCATCACAGACAATACTTACTCAAGAGAGGAGGTATTAAAAATGGAGAGTCAAGTTCTAAATTTCATGCACTTCCAGTTATCTGTTCCCACCATAAAAACATTTCTTAGGAGGTTCATTCATGCAGCTCAAGCATCTTATAAGGTTCCTTGTGTTGAACTGGAGTTATTGGCAAATTATTTAGCAGAATTGGCTCTTGTTGAATACGGCTTCCTGAAGTTCCTACCTTCCCTCATAGCCGCCTCCACTGTGTTCCTCGCCAGATGGACACTCAATCAGTCAGACCATCCATGGAACCCTACTTTAGAGCACTACACCTCGTACAAAACTTCACAGCTCAAAACTACAGTTGTTGCACTGGAAGATTTGCAATTGAACACCACTGGTTGCCTCCTAAATTCAATTCGTGAGAAGTATAAACACCAGAAGTTCAAGTCAGTGGCTACATTGACCTCCAAACAACGGGTGGTTCACTCTTTCGAAGATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008283 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:2000026 GO:2000038 GO:2000123

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

485

Amino Acids

54.69

Weight (kDa)

8.8

Isoelectric Point (pI)

51.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	261 - 349	5.9e-34	Cyclin, N-terminal domain
Cyclin_C	PF02984	351 - 473	4.6e-35	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15570 AT5G11300 AT5G11300 AT5G25380 AT5G25380 AT5G25380 AT5G25380
fragaria_vesca	FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100
malus_domestica	MD08G1137300.v1.1 MD15G1115900.v1.1
prunus_persica	Prupe.1G467200_v2.0.a1
pyrus_communis	pycom08g11590 pycom15g10450
rosa_chinensis	RchiOBHm_Chr6g0312821
rosa_laevigata	RLG00000010295
rosa_multiflora	Rmu_co8351801.1_g000001 Rmu_sc0008049.1_g000007
rosa_roxburghii	Rroxscaffold_7G00156460
rosa_rugosa	Rorug06G0399900 Rorug06G0399900 Rorug06G0399900
rosa_samantha	Rh6AG517000 Rh6BG528400 Rh6CG533100 Rh6DG519600
rosa_wichuraiana	Rw6G044910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1104
AasI	GACNNNNNNGTC	1 cut(s)	44
AccII	CGCG	1 cut(s)	640
AciI	CCGC	3 cut(s)	537, 944, 1203
AcsI	RAATTY	4 cut(s)	702, 956, 1024, 1360
AcuI	CTGAAG	4 cut(s)	381, 760, 813, 1199
AfaI	GTAC	2 cut(s)	468, 1286
AfiI	CCNNNNNNNGG	2 cut(s)	423, 1425
AflII	CTTAAG	1 cut(s)	233
AgsI	TTSAA	8 cut(s)	35, 380, 872, 1121, 1166, 1339, 1365, 1396
AhlI	ACTAGT	1 cut(s)	599
AjnI	CCWGG	2 cut(s)	471, 768
AluBI	AGCT	5 cut(s)	404, 805, 889, 1091, 1300
AluI	AGCT	5 cut(s)	404, 805, 889, 1091, 1300
Alw21I	GWGCWC	3 cut(s)	64, 943, 1275
Alw26I	GTCTC	1 cut(s)	361
Alw44I	GTGCAC	1 cut(s)	939
AoxI	GGCC	1 cut(s)	345
ApaLI	GTGCAC	1 cut(s)	939
ApeKI	GCWGC	6 cut(s)	23, 164, 211, 673, 889, 1088
ApoI	RAATTY	4 cut(s)	702, 956, 1024, 1360
ArsI	GACNNNNNNTTYG	2 cut(s)	589, 621
Asp700I	GAANNNNTTC	2 cut(s)	113, 366
AspLEI	GCGC	2 cut(s)	83, 640
AsuHPI	GGTGA	1 cut(s)	244
AsuII	TTCGAA	1 cut(s)	1443
BaeGI	GKGCMC	1 cut(s)	943
BanII	GRGCYC	1 cut(s)	447
BbsI	GAAGAC	3 cut(s)	42, 134, 649
Bbv12I	GWGCWC	3 cut(s)	64, 943, 1275
BbvCI	CCTCAGC	1 cut(s)	405
BbvI	GCAGC	6 cut(s)	10, 176, 223, 685, 876, 1100
BccI	CCATC	3 cut(s)	655, 1221, 1257
BceAI	ACGGC	1 cut(s)	1186
BciT130I	CCWGG	2 cut(s)	473, 770
BciVI	GTATCC	1 cut(s)	750
BcoDI	GTCTC	1 cut(s)	361
BcuI	ACTAGT	1 cut(s)	599
BfaI	CTAG	2 cut(s)	315, 600
BfmI	CTRYAG	1 cut(s)	1308
BfrI	CTTAAG	1 cut(s)	233
BfuI	GTATCC	1 cut(s)	750
BisI	GCNGC	7 cut(s)	24, 165, 212, 674, 890, 1089, 1203
BlsI	GCNGC	7 cut(s)	25, 166, 213, 675, 891, 1090, 1204
Bme1390I	CCNGG	2 cut(s)	473, 770
BmiI	GGNNCC	6 cut(s)	534, 560, 810, 884, 1110, 1259
BmrFI	CCNGG	2 cut(s)	473, 770
BmsI	GCATC	8 cut(s)	92, 176, 194, 274, 296, 738, 972, 1106
BoxI	GACNNNNGTC	1 cut(s)	777
BpiI	GAAGAC	3 cut(s)	42, 134, 649
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpmI	CTGGAG	2 cut(s)	869, 1145
Bpu10I	CCTNAGC	2 cut(s)	405, 614
Bpu14I	TTCGAA	1 cut(s)	1443
BpuEI	CTTGAG	2 cut(s)	970, 1077
BsaJI	CCNNGG	4 cut(s)	471, 472, 489, 1253
Bsc4I	CCNNNNNNNGG	2 cut(s)	423, 1425
Bse1I	ACTGG	6 cut(s)	87, 464, 1039, 1128, 1326, 1351
BseBI	CCWGG	2 cut(s)	473, 770
BseDI	CCNNGG	4 cut(s)	471, 472, 489, 1253
BseGI	GGATG	4 cut(s)	83, 244, 729, 1249
BseLI	CCNNNNNNNGG	2 cut(s)	423, 1425
BseMII	CTCAG	3 cut(s)	305, 396, 605
BseNI	ACTGG	6 cut(s)	87, 464, 1039, 1128, 1326, 1351
BseRI	GAGGAG	4 cut(s)	91, 94, 519, 1007
BseSI	GKGCMC	1 cut(s)	943
BseXI	GCAGC	6 cut(s)	10, 176, 223, 685, 876, 1100
BseYI	CCCAGC	1 cut(s)	689
Bsh1236I	CGCG	1 cut(s)	640
BshFI	GGCC	1 cut(s)	347
BsiHKAI	GWGCWC	3 cut(s)	64, 943, 1275
BslFI	GGGAC	2 cut(s)	507, 765
BslI	CCNNNNNNNGG	2 cut(s)	423, 1425
BsmAI	GTCTC	1 cut(s)	361
BsmFI	GGGAC	2 cut(s)	507, 765
BsnI	GGCC	1 cut(s)	347
Bsp119I	TTCGAA	1 cut(s)	1443
Bsp1286I	GDGCHC	4 cut(s)	64, 447, 943, 1275
Bsp143I	GATC	3 cut(s)	127, 844, 1447
Bsp19I	CCATGG	1 cut(s)	1253
BspACI	CCGC	3 cut(s)	537, 944, 1203
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	3 cut(s)	304, 397, 606
BspFNI	CGCG	1 cut(s)	640
BspLI	GGNNCC	6 cut(s)	534, 560, 810, 884, 1110, 1259
BspT104I	TTCGAA	1 cut(s)	1443
BspTI	CTTAAG	1 cut(s)	233
BsrI	ACTGG	6 cut(s)	87, 464, 1039, 1128, 1326, 1351
BssECI	CCNNGG	4 cut(s)	471, 472, 489, 1253
BssMI	GATC	3 cut(s)	127, 844, 1447
BssT1I	CCWWGG	2 cut(s)	489, 1253
Bst2UI	CCWGG	2 cut(s)	473, 770
Bst4CI	ACNGT	5 cut(s)	66, 355, 832, 1213, 1312
Bst6I	CTCTTC	2 cut(s)	313, 749
BstAFI	CTTAAG	1 cut(s)	233
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstBI	TTCGAA	1 cut(s)	1443
BstC8I	GCNNGC	3 cut(s)	209, 312, 695
BstDEI	CTNAG	4 cut(s)	291, 405, 614, 1070
BstDSI	CCRYGG	1 cut(s)	1253
BstF5I	GGATG	4 cut(s)	83, 244, 729, 1249
BstFNI	CGCG	1 cut(s)	640
BstHHI	GCGC	2 cut(s)	83, 640
BstKTI	GATC	3 cut(s)	130, 847, 1450
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	3 cut(s)	127, 844, 1447
BstMWI	GCNNNNNNNGC	7 cut(s)	23, 80, 401, 545, 889, 1094, 1154
BstNI	CCWGG	2 cut(s)	473, 770
BstNSI	RCATGY	2 cut(s)	697, 910
BstPAI	GACNNNNGTC	1 cut(s)	777
BstSCI	CCNGG	2 cut(s)	471, 768
BstSFI	CTRYAG	1 cut(s)	1308
BstSLI	GKGCMC	1 cut(s)	943
BstUI	CGCG	1 cut(s)	640
BstV1I	GCAGC	6 cut(s)	10, 176, 223, 685, 876, 1100
BstV2I	GAAGAC	3 cut(s)	42, 134, 649
BstXI	CCANNNNNNTGG	1 cut(s)	893
BsuI	GTATCC	1 cut(s)	750
BsuRI	GGCC	1 cut(s)	347
BtgI	CCRYGG	1 cut(s)	1253
BtsCI	GGATG	4 cut(s)	83, 244, 729, 1249
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	7 cut(s)	94, 234, 279, 1209, 1319, 1344, 1407
Cac8I	GCNNGC	3 cut(s)	209, 312, 695
CfoI	GCGC	2 cut(s)	83, 640
Csp6I	GTAC	2 cut(s)	467, 1285
CviAII	CATG	6 cut(s)	694, 734, 907, 1030, 1085, 1254
CviQI	GTAC	2 cut(s)	467, 1285
DdeI	CTNAG	4 cut(s)	291, 405, 614, 1070
DpnI	GATC	3 cut(s)	129, 846, 1449
DpnII	GATC	3 cut(s)	127, 844, 1447
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
Eam1104I	CTCTTC	2 cut(s)	313, 749
EarI	CTCTTC	2 cut(s)	313, 749
Eco130I	CCWWGG	2 cut(s)	489, 1253
Eco24I	GRGCYC	1 cut(s)	447
Eco32I	GATATC	1 cut(s)	682
Eco57I	CTGAAG	4 cut(s)	381, 760, 813, 1199
EcoRII	CCWGG	2 cut(s)	471, 768
EcoRV	GATATC	1 cut(s)	682
EcoT14I	CCWWGG	2 cut(s)	489, 1253
EcoT22I	ATGCAT	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	447
ErhI	CCWWGG	2 cut(s)	489, 1253
FaeI	CATG	6 cut(s)	697, 737, 910, 1033, 1088, 1257
FaqI	GGGAC	2 cut(s)	507, 765
FatI	CATG	6 cut(s)	693, 733, 906, 1029, 1084, 1253
FauI	CCCGC	1 cut(s)	544
FauNDI	CATATG	1 cut(s)	268
Fnu4HI	GCNGC	7 cut(s)	24, 165, 212, 674, 890, 1089, 1203
FokI	GGATG	4 cut(s)	70, 251, 716, 1236
FriOI	GRGCYC	1 cut(s)	447
Fsp4HI	GCNGC	7 cut(s)	24, 165, 212, 674, 890, 1089, 1203
FspBI	CTAG	2 cut(s)	315, 600
GlaI	GCGC	2 cut(s)	82, 639
GluI	GCNGC	7 cut(s)	24, 165, 212, 674, 890, 1089, 1203
GsaI	CCCAGC	1 cut(s)	693
GsuI	CTGGAG	2 cut(s)	869, 1145
HaeIII	GGCC	1 cut(s)	347
HhaI	GCGC	2 cut(s)	83, 640
Hin1II	CATG	6 cut(s)	697, 737, 910, 1033, 1088, 1257
Hin6I	GCGC	2 cut(s)	81, 638
HinP1I	GCGC	2 cut(s)	81, 638
HinfI	GANTC	5 cut(s)	51, 295, 542, 897, 1012
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	2 cut(s)	941, 1435
Hpy188I	TCNGA	9 cut(s)	50, 132, 172, 259, 294, 300, 361, 793, 1246
Hpy188III	TCNNGA	6 cut(s)	380, 782, 812, 987, 1177, 1370
Hpy8I	GTNNAC	2 cut(s)	941, 1435
Hpy99I	CGWCG	1 cut(s)	389
HpyAV	CCTTC	2 cut(s)	216, 1200
HpyCH4III	ACNGT	5 cut(s)	66, 355, 832, 1213, 1312
HpyCH4IV	ACGT	1 cut(s)	387
HpyF10VI	GCNNNNNNNGC	7 cut(s)	23, 80, 401, 545, 889, 1094, 1154
HpyF3I	CTNAG	4 cut(s)	291, 405, 614, 1070
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	6 cut(s)	697, 737, 910, 1033, 1088, 1257
HspAI	GCGC	2 cut(s)	81, 638
Kzo9I	GATC	3 cut(s)	127, 844, 1447
LmnI	GCTCC	3 cut(s)	506, 538, 888
Lsp1109I	GCAGC	6 cut(s)	10, 176, 223, 685, 876, 1100
LweI	GCATC	8 cut(s)	92, 176, 194, 274, 296, 738, 972, 1106
MaeI	CTAG	2 cut(s)	315, 600
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	1 cut(s)	898
MalI	GATC	3 cut(s)	129, 846, 1449
MboI	GATC	3 cut(s)	127, 844, 1447
MfeI	CAATTG	2 cut(s)	192, 1334
MhlI	GDGCHC	4 cut(s)	64, 447, 943, 1275
MlyI	GAGTC	2 cut(s)	906, 1021
Mph1103I	ATGCAT	1 cut(s)	289
MroXI	GAANNNNTTC	2 cut(s)	113, 366
MseI	TTAA	9 cut(s)	120, 234, 273, 339, 515, 591, 749, 911, 1001
MslI	CAYNNNNRTG	1 cut(s)	905
MspA1I	CMGCKG	1 cut(s)	889
MspCI	CTTAAG	1 cut(s)	233
MspR9I	CCNGG	2 cut(s)	473, 770
MunI	CAATTG	2 cut(s)	192, 1334
MvaI	CCWGG	2 cut(s)	473, 770
MvnI	CGCG	1 cut(s)	640
MwoI	GCNNNNNNNGC	7 cut(s)	23, 80, 401, 545, 889, 1094, 1154
NcoI	CCATGG	1 cut(s)	1253
NdeI	CATATG	1 cut(s)	268
NdeII	GATC	3 cut(s)	127, 844, 1447
NlaIII	CATG	6 cut(s)	697, 737, 910, 1033, 1088, 1257
NlaIV	GGNNCC	6 cut(s)	534, 560, 810, 884, 1110, 1259
NmuCI	GTSAC	1 cut(s)	898
NsiI	ATGCAT	1 cut(s)	289
NspI	RCATGY	2 cut(s)	697, 910
NspV	TTCGAA	1 cut(s)	1443
PaeI	GCATGC	1 cut(s)	697
PasI	CCCWGGG	1 cut(s)	472
PdmI	GAANNNNTTC	2 cut(s)	113, 366
PfeI	GAWTC	3 cut(s)	51, 295, 542
PkrI	GCNGC	7 cut(s)	25, 166, 213, 675, 891, 1090, 1204
PleI	GAGTC	2 cut(s)	905, 1020
PpsI	GAGTC	2 cut(s)	905, 1020
PshAI	GACNNNNGTC	1 cut(s)	777
PsiI	TTATAA	1 cut(s)	1104
Psp6I	CCWGG	2 cut(s)	471, 768
PspFI	CCCAGC	1 cut(s)	689
PspGI	CCWGG	2 cut(s)	471, 768
PspN4I	GGNNCC	6 cut(s)	534, 560, 810, 884, 1110, 1259
PvuII	CAGCTG	1 cut(s)	889
RsaI	GTAC	2 cut(s)	468, 1286
RsaNI	GTAC	2 cut(s)	467, 1285
RseI	CAYNNNNRTG	1 cut(s)	905
SaqAI	TTAA	9 cut(s)	120, 234, 273, 339, 515, 591, 749, 911, 1001
SatI	GCNGC	7 cut(s)	24, 165, 212, 674, 890, 1089, 1203
Sau3AI	GATC	3 cut(s)	127, 844, 1447
SchI	GAGTC	2 cut(s)	906, 1021
ScrFI	CCNGG	2 cut(s)	473, 770
SduI	GDGCHC	4 cut(s)	64, 447, 943, 1275
SfaNI	GCATC	8 cut(s)	92, 176, 194, 274, 296, 738, 972, 1106
SfcI	CTRYAG	1 cut(s)	1308
SfuI	TTCGAA	1 cut(s)	1443
SmiMI	CAYNNNNRTG	1 cut(s)	905
SmlI	CTYRAG	3 cut(s)	233, 985, 1092
SmoI	CTYRAG	3 cut(s)	233, 985, 1092
SpeI	ACTAGT	1 cut(s)	599
SphI	GCATGC	1 cut(s)	697
SsiI	CCGC	3 cut(s)	537, 944, 1203
SspMI	CTAG	2 cut(s)	315, 600
StyD4I	CCNGG	2 cut(s)	471, 768
StyI	CCWWGG	2 cut(s)	489, 1253
TaaI	ACNGT	5 cut(s)	66, 355, 832, 1213, 1312
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	4 cut(s)	107, 145, 920, 1443
TauI	GCSGC	1 cut(s)	1205
TfiI	GAWTC	3 cut(s)	51, 295, 542
Tru1I	TTAA	9 cut(s)	120, 234, 273, 339, 515, 591, 749, 911, 1001
Tru9I	TTAA	9 cut(s)	120, 234, 273, 339, 515, 591, 749, 911, 1001
TscAI	CASTG	7 cut(s)	94, 234, 286, 1216, 1326, 1351, 1407
TseFI	GTSAC	1 cut(s)	898
TseI	GCWGC	6 cut(s)	23, 164, 211, 673, 889, 1088
Tsp45I	GTSAC	1 cut(s)	898
TspDTI	ATGAA	7 cut(s)	17, 106, 255, 942, 1018, 1069, 1073
TspRI	CASTG	7 cut(s)	94, 234, 286, 1216, 1326, 1351, 1407
Vha464I	CTTAAG	1 cut(s)	233
VneI	GTGCAC	1 cut(s)	939
XapI	RAATTY	4 cut(s)	702, 956, 1024, 1360
XceI	RCATGY	2 cut(s)	697, 910
XcmI	CCANNNNNNNNNTGG	2 cut(s)	424, 1426
XmnI	GAANNNNTTC	2 cut(s)	113, 366
XspI	CTAG	2 cut(s)	315, 600
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.