Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8351801.1

Orthogroup ID

OG0004628

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 868

Gene Structure 868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8351801.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atgcaggttccttgtgttgaactggagttcttggcaaattatttagcagagttaactattgttgaatatggcttcttgaagttcctaccttccgtcatcgctgcctctgctgtgttccttgccagatggacacttaatcagtcagaccatccatggaacccgactttagaacactatacctcgtacaaaacatcagagctccacacttcagttattgcacttgaagatttgcaattgaacaccaaaggctgttgcctaaatgctatacgtgagaagtatagacaccagaagttcaaatccgtggctactttgatctctgcacaaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008283 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:2000026 GO:2000038 GO:2000123

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

109

Amino Acids

12.45

Weight (kDa)

6.89

Isoelectric Point (pI)

25.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15570 AT5G11300 AT5G11300 AT5G25380 AT5G25380 AT5G25380 AT5G25380
fragaria_vesca	FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100
malus_domestica	MD08G1137300.v1.1 MD15G1115900.v1.1
prunus_persica	Prupe.1G467200_v2.0.a1
pyrus_communis	pycom08g11590 pycom15g10450
rosa_chinensis	RchiOBHm_Chr6g0312821
rosa_laevigata	RLG00000010295
rosa_multiflora	Rmu_co8351801.1_g000001 Rmu_sc0008049.1_g000007
rosa_roxburghii	Rroxscaffold_7G00156460
rosa_rugosa	Rorug06G0399900 Rorug06G0399900 Rorug06G0399900
rosa_samantha	Rh6AG517000 Rh6BG528400 Rh6CG533100 Rh6DG519600
rosa_wichuraiana	Rw6G044910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	192
AfaI	GTAC	1 cut(s)	185
AgsI	TTSAA	6 cut(s)	20, 65, 79, 224, 238, 295
AluBI	AGCT	1 cut(s)	199
AluI	AGCT	1 cut(s)	199
Alw21I	GWGCWC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	2 cut(s)	120, 156
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
BmiI	GGNNCC	2 cut(s)	9, 158
BpmI	CTGGAG	1 cut(s)	44
BsaAI	YACGTR	1 cut(s)	269
BsaJI	CCNNGG	2 cut(s)	152, 300
Bse1I	ACTGG	1 cut(s)	27
BseDI	CCNNGG	2 cut(s)	152, 300
BseGI	GGATG	1 cut(s)	148
BseNI	ACTGG	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	88
BsgI	GTGCAG	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	201
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	312
Bsp19I	CCATGG	1 cut(s)	152
BspLI	GGNNCC	2 cut(s)	9, 158
BsrI	ACTGG	1 cut(s)	27
BssECI	CCNNGG	2 cut(s)	152, 300
BssMI	GATC	1 cut(s)	312
BssT1I	CCWWGG	1 cut(s)	152
BstBAI	YACGTR	1 cut(s)	269
BstDSI	CCRYGG	2 cut(s)	152, 300
BstF5I	GGATG	1 cut(s)	148
BstKTI	GATC	1 cut(s)	315
BstMBI	GATC	1 cut(s)	312
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstV1I	GCAGC	1 cut(s)	88
BtgI	CCRYGG	2 cut(s)	152, 300
BtgZI	GCGATG	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	1 cut(s)	153
CviJI	RGCY	4 cut(s)	72, 199, 249, 305
CviKI_1	RGCY	4 cut(s)	72, 199, 249, 305
CviQI	GTAC	1 cut(s)	184
DpnI	GATC	1 cut(s)	314
DpnII	GATC	1 cut(s)	312
Ecl136II	GAGCTC	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	152
Eco24I	GRGCYC	1 cut(s)	201
Eco53kI	GAGCTC	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	192
EcoICRI	GAGCTC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	152
EcoT38I	GRGCYC	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	1 cut(s)	156
FaiI	YATR	5 cut(s)	69, 154, 177, 266, 279
FatI	CATG	1 cut(s)	152
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	1 cut(s)	135
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	102
GluI	GCNGC	1 cut(s)	102
GsuI	CTGGAG	1 cut(s)	44
Hin1II	CATG	1 cut(s)	156
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HpaI	GTTAAC	1 cut(s)	54
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	2 cut(s)	145, 196
Hpy188III	TCNNGA	1 cut(s)	76
Hpy8I	GTNNAC	1 cut(s)	54
HpyAV	CCTTC	1 cut(s)	99
HpyCH4IV	ACGT	1 cut(s)	268
HpyCH4V	TGCA	4 cut(s)	4, 218, 232, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpySE526I	ACGT	1 cut(s)	268
Hsp92II	CATG	1 cut(s)	156
KspAI	GTTAAC	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	312
LmnI	GCTCC	1 cut(s)	204
LpnPI	CCDG	3 cut(s)	8, 136, 299
Lsp1109I	GCAGC	1 cut(s)	88
MaeII	ACGT	1 cut(s)	268
MalI	GATC	1 cut(s)	314
MboI	GATC	1 cut(s)	312
MboII	GAAGA	1 cut(s)	236
MfeI	CAATTG	1 cut(s)	233
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	2 cut(s)	37, 233
MnlI	CCTC	2 cut(s)	115, 190
MseI	TTAA	2 cut(s)	53, 135
MunI	CAATTG	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	107
NcoI	CCATGG	1 cut(s)	152
NdeII	GATC	1 cut(s)	312
NlaIII	CATG	1 cut(s)	156
NlaIV	GGNNCC	2 cut(s)	9, 158
PkrI	GCNGC	1 cut(s)	103
Ppu21I	YACGTR	1 cut(s)	269
Psp124BI	GAGCTC	1 cut(s)	201
PspN4I	GGNNCC	2 cut(s)	9, 158
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SacI	GAGCTC	1 cut(s)	201
SaqAI	TTAA	2 cut(s)	53, 135
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	1 cut(s)	312
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	5 cut(s)	9, 91, 182, 201, 271
Sse9I	AATT	2 cut(s)	37, 233
SstI	GAGCTC	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	152
TaiI	ACGT	1 cut(s)	271
TasI	AATT	2 cut(s)	37, 233
Tru1I	TTAA	2 cut(s)	53, 135
Tru9I	TTAA	2 cut(s)	53, 135
TseI	GCWGC	1 cut(s)	101
TspGWI	ACGGA	2 cut(s)	82, 289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.