Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004628

Physical Location & Seq

Genomic Coordinates Forward (+)

8814517 .. 8817887

Gene Structure 3371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G25380.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGCATAGAGCTTCTTCTAAGCACACTAATGCGAAGAAAGAAGCAATCTCTACTTCGAAAATTCGAGATAATAATGTGAGAGTCACTAGATCAAGAGCTAAGGCCTTAGGAGTGTCGAATTCTCCATCAAAACCCGCTTTTAAACATGAAACGAAGCGTGTTGCTAGACCGAGTAATAAACGAATGGCATCGGATAATATCACAGTTTGTAATCAGAAAAGACGAGCGGTGCTCAAGGATGTGACTAACACTTTGGCAGAAAGTATAATTTCTACAGAAGGCAATGTTAAGGCTTGCAAGCGAGGTGGTAAAGAAACTAAGCAAATAGAAGAAGATGGTTTGGTAGATGTGGATGGCGAAAAATCTAAACTAGCAGAAGATTTGTCAAAGATTAGAATGGTTGAATCTTTAGATGCATCTGCTTCAAAGCAAAAAGAAGACAGATCTGATGTCACAGATTGTGTTCAGATTGTAGATATAGATTCAGGTGTCCAAGATCCTCAGTTTTGTAGCTTATATGCTGCAAGTATATATGACAGCATTAATGTTGCAGAGCTTGAACAAAGACCTTCAACTAGCTATATGGTGCAAGTGCAGCGAGATATCGATCCAACGATGCGCGGAATTCTGATTGATTGGCTCGTGGAGGTCTCTGAAGAGTACAAGTTGGTTTCAGATACACTTTACCTTACCGTGAATCTAATTGATCGGTTCATGTCTCATAATTACATTGAAAAGCAGAAGCTCCAGCTACTTGGTATCACTTGCATGTTAATAGCCTCCAAATACGAAGAGATTAGTGCACCGCGGTTGGAGGAGTTTTGCTTCATTACAGACAATACATACACAAGACTAGAAGTACTAAGTATGGAGATTAAAGTTTTAAACTCTCTTCATTTTCGGTTATCAGTTCCCACCACCAAAACGTTTCTCAGGCGGTTCATTCGCGCCGCTCAAGCGTCTGATAAGGTTCCTCTCATTGAAATGGAGTACTTAGCCAACTATTTCGCGGAACTAACTCTCACAGAATATACTTTCCTAAGGTTCCTTCCATCCCTAATTGCCGCTTCAGCGGTTTTCTTAGCAAGATGGACACTCGACCAATCTAACCATCCTTGGAACCAAACTCTACAACACTATACAAGATATGAAACATCCGCTCTAAAAAACACGGTACTTGCAATGGAGGAGTTGCAGCTCAACACCAGTGGAAGCACTCTTATCGCTATACACACCAAATACAACCAACAAAAGTTTAAAAGAGTGGCAACATTAACATCTCCTGAACGTGTGAACACACTCTTCTCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008283 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:2000026 GO:2000038 GO:2000123

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

437

Amino Acids

49.71

Weight (kDa)

8.8

Isoelectric Point (pI)

47.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	183 - 309	3.2e-46	Cyclin, N-terminal domain
Cyclin_C	PF02984	311 - 433	2e-37	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15570 AT5G11300 AT5G11300 AT5G25380 AT5G25380 AT5G25380 AT5G25380
fragaria_vesca	FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100
malus_domestica	MD08G1137300.v1.1 MD15G1115900.v1.1
prunus_persica	Prupe.1G467200_v2.0.a1
pyrus_communis	pycom08g11590 pycom15g10450
rosa_chinensis	RchiOBHm_Chr6g0312821
rosa_laevigata	RLG00000010295
rosa_multiflora	Rmu_co8351801.1_g000001 Rmu_sc0008049.1_g000007
rosa_roxburghii	Rroxscaffold_7G00156460
rosa_rugosa	Rorug06G0399900 Rorug06G0399900 Rorug06G0399900
rosa_samantha	Rh6AG517000 Rh6BG528400 Rh6CG533100 Rh6DG519600
rosa_wichuraiana	Rw6G044910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	227, 953, 1160
AccII	CGCG	4 cut(s)	621, 808, 948, 1010
AclI	AACGTT	1 cut(s)	926
AclWI	GGATC	2 cut(s)	491, 602
AcsI	RAATTY	3 cut(s)	60, 118, 624
AcuI	CTGAAG	2 cut(s)	675, 1053
AfaI	GTAC	4 cut(s)	662, 861, 992, 1176
AflIII	ACRYGT	1 cut(s)	1288
AgsI	TTSAA	6 cut(s)	404, 426, 560, 573, 734, 983
AluBI	AGCT	8 cut(s)	11, 98, 513, 556, 579, 745, 751, 1198
AluI	AGCT	8 cut(s)	11, 98, 513, 556, 579, 745, 751, 1198
Alw21I	GWGCWC	2 cut(s)	234, 805
Alw26I	GTCTC	2 cut(s)	655, 723
Alw44I	GTGCAC	1 cut(s)	801
AlwI	GGATC	2 cut(s)	491, 602
AoxI	GGCC	1 cut(s)	102
ApaLI	GTGCAC	1 cut(s)	801
ApeKI	GCWGC	3 cut(s)	521, 595, 1195
ApoI	RAATTY	3 cut(s)	60, 118, 624
ArsI	GACNNNNNNTTYG	2 cut(s)	235, 267
AseI	ATTAAT	1 cut(s)	543
AspLEI	GCGC	2 cut(s)	621, 950
AsuII	TTCGAA	1 cut(s)	56
AxyI	CCTNAGG	2 cut(s)	106, 1040
BaeGI	GKGCMC	1 cut(s)	805
BauI	CACGAG	1 cut(s)	641
BbsI	GAAGAC	1 cut(s)	444
Bbv12I	GWGCWC	2 cut(s)	234, 805
BbvI	GCAGC	3 cut(s)	508, 607, 1207
BccI	CCATC	6 cut(s)	133, 329, 347, 1060, 1083, 1119
BcgI	CGANNNNNNTGC	2 cut(s)	1204, 1238
BcoDI	GTCTC	2 cut(s)	655, 723
BfaI	CTAG	5 cut(s)	87, 165, 371, 576, 854
BfmI	CTRYAG	1 cut(s)	273
BglII	AGATCT	1 cut(s)	443
BisI	GCNGC	5 cut(s)	522, 596, 951, 1065, 1196
BlsI	GCNGC	5 cut(s)	523, 597, 952, 1066, 1197
BmcAI	AGTACT	2 cut(s)	861, 992
BmiI	GGNNCC	3 cut(s)	972, 1046, 1121
BmsI	GCATC	4 cut(s)	197, 403, 425, 606
BpiI	GAAGAC	1 cut(s)	444
BplI	GAGNNNNNCTC	2 cut(s)	216, 248
BpmI	CTGGAG	1 cut(s)	731
Bpu10I	CCTNAGC	1 cut(s)	99
Bpu14I	TTCGAA	1 cut(s)	56
BpuEI	CTTGAG	3 cut(s)	218, 939, 1291
Bsa29I	ATCGAT	1 cut(s)	606
BsaBI	GATNNNNATC	1 cut(s)	606
BsaI	GGTCTC	1 cut(s)	655
BsaJI	CCNNGG	2 cut(s)	806, 1115
Bse1I	ACTGG	1 cut(s)	1206
Bse21I	CCTNAGG	2 cut(s)	106, 1040
Bse3DI	GCAATG	2 cut(s)	289, 1188
Bse8I	GATNNNNATC	1 cut(s)	606
BseCI	ATCGAT	1 cut(s)	606
BseDI	CCNNGG	2 cut(s)	806, 1115
BseGI	GGATG	5 cut(s)	244, 358, 1052, 1111, 1154
BseJI	GATNNNNATC	1 cut(s)	606
BseMI	GCAATG	2 cut(s)	289, 1188
BseMII	CTCAG	2 cut(s)	515, 946
BseNI	ACTGG	1 cut(s)	1206
BseRI	GAGGAG	2 cut(s)	830, 1202
BseSI	GKGCMC	1 cut(s)	805
BseXI	GCAGC	3 cut(s)	508, 607, 1207
BsgI	GTGCAG	1 cut(s)	614
Bsh1236I	CGCG	4 cut(s)	621, 808, 948, 1010
BshFI	GGCC	1 cut(s)	104
BshVI	ATCGAT	1 cut(s)	606
BsiHKAI	GWGCWC	2 cut(s)	234, 805
BsmAI	GTCTC	2 cut(s)	655, 723
BsnI	GGCC	1 cut(s)	104
Bso31I	GGTCTC	1 cut(s)	655
Bsp119I	TTCGAA	1 cut(s)	56
Bsp1286I	GDGCHC	2 cut(s)	234, 805
Bsp143I	GATC	5 cut(s)	89, 443, 496, 607, 706
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	2 cut(s)	514, 945
BspDI	ATCGAT	1 cut(s)	606
BspFNI	CGCG	4 cut(s)	621, 808, 948, 1010
BspLI	GGNNCC	3 cut(s)	972, 1046, 1121
BspPI	GGATC	2 cut(s)	491, 602
BspT104I	TTCGAA	1 cut(s)	56
BspTNI	GGTCTC	1 cut(s)	655
BsrBI	CCGCTC	3 cut(s)	227, 953, 1160
BsrDI	GCAATG	2 cut(s)	289, 1188
BsrI	ACTGG	1 cut(s)	1206
BssECI	CCNNGG	2 cut(s)	806, 1115
BssMI	GATC	5 cut(s)	89, 443, 496, 607, 706
BssSI	CACGAG	1 cut(s)	641
BssT1I	CCWWGG	1 cut(s)	1115
Bst2BI	CACGAG	1 cut(s)	641
Bst4CI	ACNGT	3 cut(s)	205, 694, 1174
Bst6I	CTCTTC	4 cut(s)	651, 786, 897, 1307
BstBI	TTCGAA	1 cut(s)	56
BstC8I	GCNNGC	2 cut(s)	295, 299
BstDSI	CCRYGG	1 cut(s)	806
BstF5I	GGATG	5 cut(s)	244, 358, 1052, 1111, 1154
BstFNI	CGCG	4 cut(s)	621, 808, 948, 1010
BstHHI	GCGC	2 cut(s)	621, 950
BstKTI	GATC	5 cut(s)	92, 446, 499, 610, 709
BstMAI	GTCTC	2 cut(s)	655, 723
BstMBI	GATC	5 cut(s)	89, 443, 496, 607, 706
BstMWI	GCNNNNNNNGC	3 cut(s)	595, 956, 1070
BstNSI	RCATGY	1 cut(s)	772
BstSFI	CTRYAG	1 cut(s)	273
BstSLI	GKGCMC	1 cut(s)	805
BstUI	CGCG	4 cut(s)	621, 808, 948, 1010
BstV1I	GCAGC	3 cut(s)	508, 607, 1207
BstV2I	GAAGAC	1 cut(s)	444
BstX2I	RGATCY	2 cut(s)	443, 496
BstXI	CCANNNNNNTGG	1 cut(s)	755
BstYI	RGATCY	2 cut(s)	443, 496
Bsu15I	ATCGAT	1 cut(s)	606
Bsu36I	CCTNAGG	2 cut(s)	106, 1040
BsuRI	GGCC	1 cut(s)	104
BsuTUI	ATCGAT	1 cut(s)	606
BtgI	CCRYGG	1 cut(s)	806
BtsCI	GGATG	5 cut(s)	244, 358, 1052, 1111, 1154
BtsIMutI	CAGTG	1 cut(s)	1213
Cac8I	GCNNGC	2 cut(s)	295, 299
CfoI	GCGC	2 cut(s)	621, 950
Cfr42I	CCGCGG	1 cut(s)	809
ClaI	ATCGAT	1 cut(s)	606
CseI	GACGC	1 cut(s)	948
Csp6I	GTAC	4 cut(s)	661, 860, 991, 1175
CspCI	CAANNNNNGTGG	4 cut(s)	286, 321, 1189, 1224
CviAII	CATG	3 cut(s)	146, 715, 769
CviQI	GTAC	4 cut(s)	661, 860, 991, 1175
DpnI	GATC	5 cut(s)	91, 445, 498, 609, 708
DpnII	GATC	5 cut(s)	89, 443, 496, 607, 706
DraI	TTTAAA	3 cut(s)	142, 885, 1258
Eam1104I	CTCTTC	4 cut(s)	651, 786, 897, 1307
EarI	CTCTTC	4 cut(s)	651, 786, 897, 1307
Eco130I	CCWWGG	1 cut(s)	1115
Eco147I	AGGCCT	1 cut(s)	104
Eco31I	GGTCTC	1 cut(s)	655
Eco32I	GATATC	1 cut(s)	604
Eco57I	CTGAAG	2 cut(s)	675, 1053
Eco81I	CCTNAGG	2 cut(s)	106, 1040
EcoRI	GAATTC	2 cut(s)	118, 624
EcoRV	GATATC	1 cut(s)	604
EcoT14I	CCWWGG	1 cut(s)	1115
EcoT22I	ATGCAT	2 cut(s)	6, 418
ErhI	CCWWGG	1 cut(s)	1115
FaeI	CATG	3 cut(s)	149, 718, 772
FatI	CATG	3 cut(s)	145, 714, 768
FauI	CCCGC	1 cut(s)	142
Fnu4HI	GCNGC	5 cut(s)	522, 596, 951, 1065, 1196
FokI	GGATG	5 cut(s)	251, 365, 1039, 1098, 1141
Fsp4HI	GCNGC	5 cut(s)	522, 596, 951, 1065, 1196
FspBI	CTAG	5 cut(s)	87, 165, 371, 576, 854
GlaI	GCGC	2 cut(s)	620, 949
GluI	GCNGC	5 cut(s)	522, 596, 951, 1065, 1196
GsuI	CTGGAG	1 cut(s)	731
HaeIII	GGCC	1 cut(s)	104
HgaI	GACGC	1 cut(s)	948
HhaI	GCGC	2 cut(s)	621, 950
Hin1II	CATG	3 cut(s)	149, 718, 772
Hin6I	GCGC	2 cut(s)	619, 948
HinP1I	GCGC	2 cut(s)	619, 948
HinfI	GANTC	4 cut(s)	81, 404, 482, 697
Hpy166II	GTNNAC	2 cut(s)	803, 1294
Hpy188I	TCNGA	8 cut(s)	193, 216, 448, 468, 630, 655, 676, 964
Hpy188III	TCNNGA	4 cut(s)	65, 93, 1283, 1308
Hpy8I	GTNNAC	2 cut(s)	803, 1294
HpyAV	CCTTC	3 cut(s)	272, 579, 1058
HpyCH4III	ACNGT	3 cut(s)	205, 694, 1174
HpyCH4IV	ACGT	2 cut(s)	926, 1288
HpyF10VI	GCNNNNNNNGC	3 cut(s)	595, 956, 1070
HpySE526I	ACGT	2 cut(s)	926, 1288
Hsp92II	CATG	3 cut(s)	149, 718, 772
HspAI	GCGC	2 cut(s)	619, 948
KspI	CCGCGG	1 cut(s)	809
Kzo9I	GATC	5 cut(s)	89, 443, 496, 607, 706
LmnI	GCTCC	1 cut(s)	750
LpnPI	CCDG	5 cut(s)	471, 761, 919, 1219, 1296
Lsp1109I	GCAGC	3 cut(s)	508, 607, 1207
LweI	GCATC	4 cut(s)	197, 403, 425, 606
MaeI	CTAG	5 cut(s)	87, 165, 371, 576, 854
MaeII	ACGT	2 cut(s)	926, 1288
MaeIII	GTNAC	3 cut(s)	82, 241, 451
MalI	GATC	5 cut(s)	91, 445, 498, 609, 708
MbiI	CCGCTC	3 cut(s)	227, 953, 1160
MboI	GATC	5 cut(s)	89, 443, 496, 607, 706
MflI	RGATCY	2 cut(s)	443, 496
MhlI	GDGCHC	2 cut(s)	234, 805
MluCI	AATT	7 cut(s)	60, 118, 267, 624, 702, 724, 1059
MlyI	GAGTC	1 cut(s)	90
MmeI	TCCRAC	2 cut(s)	635, 792
MnlI	CCTC	7 cut(s)	296, 510, 640, 790, 808, 984, 1180
Mph1103I	ATGCAT	2 cut(s)	6, 418
MseI	TTAA	8 cut(s)	141, 288, 543, 773, 876, 884, 1257, 1274
MslI	CAYNNNNRTG	3 cut(s)	27, 767, 983
MspA1I	CMGCKG	2 cut(s)	808, 1073
MvnI	CGCG	4 cut(s)	621, 808, 948, 1010
MwoI	GCNNNNNNNGC	3 cut(s)	595, 956, 1070
NdeII	GATC	5 cut(s)	89, 443, 496, 607, 706
NlaIII	CATG	3 cut(s)	149, 718, 772
NlaIV	GGNNCC	3 cut(s)	972, 1046, 1121
NmuCI	GTSAC	3 cut(s)	82, 241, 451
NsiI	ATGCAT	2 cut(s)	6, 418
NspI	RCATGY	1 cut(s)	772
NspV	TTCGAA	1 cut(s)	56
PceI	AGGCCT	1 cut(s)	104
PfeI	GAWTC	3 cut(s)	404, 482, 697
PkrI	GCNGC	5 cut(s)	523, 597, 952, 1066, 1197
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PshBI	ATTAAT	1 cut(s)	543
Psp1406I	AACGTT	1 cut(s)	926
PspN4I	GGNNCC	3 cut(s)	972, 1046, 1121
PsuI	RGATCY	2 cut(s)	443, 496
RsaI	GTAC	4 cut(s)	662, 861, 992, 1176
RsaNI	GTAC	4 cut(s)	661, 860, 991, 1175
RseI	CAYNNNNRTG	3 cut(s)	27, 767, 983
SacII	CCGCGG	1 cut(s)	809
SaqAI	TTAA	8 cut(s)	141, 288, 543, 773, 876, 884, 1257, 1274
SatI	GCNGC	5 cut(s)	522, 596, 951, 1065, 1196
Sau3AI	GATC	5 cut(s)	89, 443, 496, 607, 706
ScaI	AGTACT	2 cut(s)	861, 992
SchI	GAGTC	1 cut(s)	90
SduI	GDGCHC	2 cut(s)	234, 805
SfaNI	GCATC	4 cut(s)	197, 403, 425, 606
SfcI	CTRYAG	1 cut(s)	273
Sfr303I	CCGCGG	1 cut(s)	809
SfuI	TTCGAA	1 cut(s)	56
SgrBI	CCGCGG	1 cut(s)	809
SmiMI	CAYNNNNRTG	3 cut(s)	27, 767, 983
SmlI	CTYRAG	3 cut(s)	233, 954, 1306
SmoI	CTYRAG	3 cut(s)	233, 954, 1306
Sse9I	AATT	7 cut(s)	60, 118, 267, 624, 702, 724, 1059
SseBI	AGGCCT	1 cut(s)	104
SspMI	CTAG	5 cut(s)	87, 165, 371, 576, 854
StuI	AGGCCT	1 cut(s)	104
StyI	CCWWGG	1 cut(s)	1115
TaaI	ACNGT	3 cut(s)	205, 694, 1174
TaiI	ACGT	2 cut(s)	929, 1291
TaqI	TCGA	5 cut(s)	56, 64, 116, 606, 1098
TaqII	GACCGA	1 cut(s)	184
TasI	AATT	7 cut(s)	60, 118, 267, 624, 702, 724, 1059
TatI	WGTACW	3 cut(s)	660, 859, 990
TauI	GCSGC	2 cut(s)	953, 1067
TfiI	GAWTC	3 cut(s)	404, 482, 697
Tru1I	TTAA	8 cut(s)	141, 288, 543, 773, 876, 884, 1257, 1274
Tru9I	TTAA	8 cut(s)	141, 288, 543, 773, 876, 884, 1257, 1274
TscAI	CASTG	1 cut(s)	1213
TseFI	GTSAC	3 cut(s)	82, 241, 451
TseI	GCWGC	3 cut(s)	521, 595, 1195
Tsp45I	GTSAC	3 cut(s)	82, 241, 451
TspDTI	ATGAA	6 cut(s)	162, 703, 817, 884, 931, 1164
TspRI	CASTG	1 cut(s)	1213
VneI	GTGCAC	1 cut(s)	801
VspI	ATTAAT	1 cut(s)	543
XapI	RAATTY	3 cut(s)	60, 118, 624
XceI	RCATGY	1 cut(s)	772
XspI	CTAG	5 cut(s)	87, 165, 371, 576, 854
ZrmI	AGTACT	2 cut(s)	861, 992
Zsp2I	ATGCAT	2 cut(s)	6, 418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.