Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008049.1

Orthogroup ID

OG0004628

Physical Location & Seq

Genomic Coordinates Reverse (-)

23499 .. 25275

Gene Structure 1777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008049.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atggaaaacttgcagcaagatatcactccaagcatgcgaggaattttgattgattggcttgtggaggtttctgaagaatataagctggttcctgatacactttacctcactgtgaatctcattgatcgctttctctcacagaactttgttgaaaagcaaaggctccagctgcttggagtcacttgcatgttaattgcctcgaagtatgaagaaattgttgcaccacgagtggaagaattttgtctcatcacggacaatacttactcaagagaagaggtattagaaatggagagtgaagtactaaatttcttgcacttccagttatctgttccaaccacgaaaacatttcttaggaggtttgttcaagcggcacaagcttcttataaggttccttgtgttgaactggagttcttggcaaattatttagcagagttaactattgttgaatatggcttcttgaagttcctaccttccgtcatcgctgcctctgctgtgttccttgccagatggacacttaatcagtcagaccatccatggaacccgactttagaacactatacctcgtacaaaacatcagagctccacacttcagttattgcacttgaagatttgcaattgaacaccaaaggctgttgcttctcatctcagcacatgggaagttctaagagcaatatgcgcgctgggttgcaaaattgcaacaagaaatgtagctccttcattgttattgtactcaaaacctacatgtatgaaaaaaaagaagaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008283 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:2000026 GO:2000038 GO:2000123

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

254

Amino Acids

29.29

Weight (kDa)

5.26

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15570 AT5G11300 AT5G11300 AT5G25380 AT5G25380 AT5G25380 AT5G25380
fragaria_vesca	FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100
malus_domestica	MD08G1137300.v1.1 MD15G1115900.v1.1
prunus_persica	Prupe.1G467200_v2.0.a1
pyrus_communis	pycom08g11590 pycom15g10450
rosa_chinensis	RchiOBHm_Chr6g0312821
rosa_laevigata	RLG00000010295
rosa_multiflora	Rmu_co8351801.1_g000001 Rmu_sc0008049.1_g000007
rosa_roxburghii	Rroxscaffold_7G00156460
rosa_rugosa	Rorug06G0399900 Rorug06G0399900 Rorug06G0399900
rosa_samantha	Rh6AG517000 Rh6BG528400 Rh6CG533100 Rh6DG519600
rosa_wichuraiana	Rw6G044910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	384
AccII	CGCG	1 cut(s)	678
AciI	CCGC	1 cut(s)	368
AcsI	RAATTY	3 cut(s)	42, 236, 304
AcuI	CTGAAG	2 cut(s)	93, 573
AfaI	GTAC	3 cut(s)	300, 566, 729
AflIII	ACRYGT	1 cut(s)	741
AgsI	TTSAA	7 cut(s)	152, 365, 401, 446, 460, 605, 619
AluBI	AGCT	5 cut(s)	85, 169, 377, 580, 711
AluI	AGCT	5 cut(s)	85, 169, 377, 580, 711
Alw21I	GWGCWC	1 cut(s)	582
Alw26I	GTCTC	1 cut(s)	248
ApeKI	GCWGC	3 cut(s)	13, 169, 482
ApoI	RAATTY	3 cut(s)	42, 236, 304
AspLEI	GCGC	2 cut(s)	678, 680
BanII	GRGCYC	1 cut(s)	582
BauI	CACGAG	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	582
BbvI	GCAGC	3 cut(s)	25, 156, 469
BccI	CCATC	2 cut(s)	501, 537
BcoDI	GTCTC	1 cut(s)	248
BisI	GCNGC	4 cut(s)	14, 170, 369, 483
BlsI	GCNGC	4 cut(s)	15, 171, 370, 484
BmcAI	AGTACT	1 cut(s)	300
BmiI	GGNNCC	4 cut(s)	90, 164, 390, 539
BpmI	CTGGAG	2 cut(s)	149, 425
BpuEI	CTTGAG	1 cut(s)	250
BsaJI	CCNNGG	1 cut(s)	533
Bse1I	ACTGG	2 cut(s)	319, 408
BseDI	CCNNGG	1 cut(s)	533
BseGI	GGATG	1 cut(s)	529
BseMII	CTCAG	1 cut(s)	659
BseNI	ACTGG	2 cut(s)	319, 408
BsePI	GCGCGC	1 cut(s)	676
BseXI	GCAGC	3 cut(s)	25, 156, 469
BseYI	CCCAGC	1 cut(s)	680
Bsh1236I	CGCG	1 cut(s)	678
BsiHKAI	GWGCWC	1 cut(s)	582
BsmAI	GTCTC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	582
Bsp143I	GATC	1 cut(s)	124
Bsp19I	CCATGG	1 cut(s)	533
BspACI	CCGC	1 cut(s)	368
BspCNI	CTCAG	1 cut(s)	658
BspFNI	CGCG	1 cut(s)	678
BspLI	GGNNCC	4 cut(s)	90, 164, 390, 539
BsrI	ACTGG	2 cut(s)	319, 408
BssECI	CCNNGG	1 cut(s)	533
BssHII	GCGCGC	1 cut(s)	676
BssMI	GATC	1 cut(s)	124
BssSI	CACGAG	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	533
Bst2BI	CACGAG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	1 cut(s)	267
BstC8I	GCNNGC	2 cut(s)	35, 678
BstDEI	CTNAG	3 cut(s)	350, 645, 663
BstDSI	CCRYGG	1 cut(s)	533
BstF5I	GGATG	1 cut(s)	529
BstFNI	CGCG	1 cut(s)	678
BstHHI	GCGC	2 cut(s)	678, 680
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	4 cut(s)	169, 374, 488, 675
BstNSI	RCATGY	3 cut(s)	37, 190, 745
BstUI	CGCG	1 cut(s)	678
BstV1I	GCAGC	3 cut(s)	25, 156, 469
BstXI	CCANNNNNNTGG	1 cut(s)	173
BtgI	CCRYGG	1 cut(s)	533
BtgZI	GCGATG	1 cut(s)	463
BtsCI	GGATG	1 cut(s)	529
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	2 cut(s)	35, 678
CfoI	GCGC	2 cut(s)	678, 680
Csp6I	GTAC	3 cut(s)	299, 565, 728
CviAII	CATG	5 cut(s)	34, 187, 534, 652, 742
CviJI	RGCY	9 cut(s)	58, 85, 163, 169, 377, 453, 580, 630, 711
CviKI_1	RGCY	9 cut(s)	58, 85, 163, 169, 377, 453, 580, 630, 711
CviQI	GTAC	3 cut(s)	299, 565, 728
DdeI	CTNAG	3 cut(s)	350, 645, 663
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Ecl136II	GAGCTC	1 cut(s)	580
Eco130I	CCWWGG	1 cut(s)	533
Eco24I	GRGCYC	1 cut(s)	582
Eco32I	GATATC	1 cut(s)	22
Eco53kI	GAGCTC	1 cut(s)	580
Eco57I	CTGAAG	2 cut(s)	93, 573
EcoICRI	GAGCTC	1 cut(s)	580
EcoRV	GATATC	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	533
EcoT38I	GRGCYC	1 cut(s)	582
ErhI	CCWWGG	1 cut(s)	533
FaeI	CATG	5 cut(s)	37, 190, 537, 655, 745
FatI	CATG	5 cut(s)	33, 186, 533, 651, 741
Fnu4HI	GCNGC	4 cut(s)	14, 170, 369, 483
FokI	GGATG	1 cut(s)	516
FriOI	GRGCYC	1 cut(s)	582
Fsp4HI	GCNGC	4 cut(s)	14, 170, 369, 483
GlaI	GCGC	2 cut(s)	677, 679
GluI	GCNGC	4 cut(s)	14, 170, 369, 483
GsaI	CCCAGC	1 cut(s)	684
GsuI	CTGGAG	2 cut(s)	149, 425
HhaI	GCGC	2 cut(s)	678, 680
Hin1II	CATG	5 cut(s)	37, 190, 537, 655, 745
Hin6I	GCGC	2 cut(s)	676, 678
HinP1I	GCGC	2 cut(s)	676, 678
HincII	GTYRAC	1 cut(s)	435
HindII	GTYRAC	1 cut(s)	435
HindIII	AAGCTT	1 cut(s)	375
HinfI	GANTC	2 cut(s)	115, 177
HpaI	GTTAAC	1 cut(s)	435
Hpy166II	GTNNAC	1 cut(s)	435
Hpy188I	TCNGA	3 cut(s)	73, 526, 577
Hpy188III	TCNNGA	3 cut(s)	92, 267, 457
Hpy8I	GTNNAC	1 cut(s)	435
HpyAV	CCTTC	2 cut(s)	480, 724
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	8 cut(s)	13, 186, 221, 313, 599, 613, 688, 696
HpyF10VI	GCNNNNNNNGC	4 cut(s)	169, 374, 488, 675
HpyF3I	CTNAG	3 cut(s)	350, 645, 663
Hsp92II	CATG	5 cut(s)	37, 190, 537, 655, 745
HspAI	GCGC	2 cut(s)	676, 678
KspAI	GTTAAC	1 cut(s)	435
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	3 cut(s)	168, 585, 716
LpnPI	CCDG	7 cut(s)	71, 105, 179, 332, 389, 517, 666
Lsp1109I	GCAGC	3 cut(s)	25, 156, 469
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	5 cut(s)	86, 221, 245, 284, 617
MfeI	CAATTG	1 cut(s)	614
MhlI	GDGCHC	1 cut(s)	582
MluCI	AATT	8 cut(s)	42, 192, 213, 236, 304, 418, 614, 691
MlyI	GAGTC	1 cut(s)	186
MmeI	TCCRAC	1 cut(s)	356
MnlI	CCTC	8 cut(s)	32, 58, 116, 208, 268, 348, 496, 571
MseI	TTAA	3 cut(s)	191, 434, 516
MslI	CAYNNNNRTG	1 cut(s)	185
MspA1I	CMGCKG	1 cut(s)	169
MunI	CAATTG	1 cut(s)	614
MvnI	CGCG	1 cut(s)	678
MwoI	GCNNNNNNNGC	4 cut(s)	169, 374, 488, 675
NcoI	CCATGG	1 cut(s)	533
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	5 cut(s)	37, 190, 537, 655, 745
NlaIV	GGNNCC	4 cut(s)	90, 164, 390, 539
NmuCI	GTSAC	1 cut(s)	178
NspI	RCATGY	3 cut(s)	37, 190, 745
PaeI	GCATGC	1 cut(s)	37
PauI	GCGCGC	1 cut(s)	676
PciI	ACATGT	1 cut(s)	741
PfeI	GAWTC	1 cut(s)	115
PkrI	GCNGC	4 cut(s)	15, 171, 370, 484
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PscI	ACATGT	1 cut(s)	741
PsiI	TTATAA	1 cut(s)	384
Psp124BI	GAGCTC	1 cut(s)	582
PspFI	CCCAGC	1 cut(s)	680
PspN4I	GGNNCC	4 cut(s)	90, 164, 390, 539
PteI	GCGCGC	1 cut(s)	676
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	3 cut(s)	300, 566, 729
RsaNI	GTAC	3 cut(s)	299, 565, 728
RseI	CAYNNNNRTG	1 cut(s)	185
SacI	GAGCTC	1 cut(s)	582
SaqAI	TTAA	3 cut(s)	191, 434, 516
SatI	GCNGC	4 cut(s)	14, 170, 369, 483
Sau3AI	GATC	1 cut(s)	124
ScaI	AGTACT	1 cut(s)	300
SchI	GAGTC	1 cut(s)	186
SduI	GDGCHC	1 cut(s)	582
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
SphI	GCATGC	1 cut(s)	37
Sse9I	AATT	8 cut(s)	42, 192, 213, 236, 304, 418, 614, 691
SsiI	CCGC	1 cut(s)	368
SstI	GAGCTC	1 cut(s)	582
StyI	CCWWGG	1 cut(s)	533
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	200
TasI	AATT	8 cut(s)	42, 192, 213, 236, 304, 418, 614, 691
TatI	WGTACW	2 cut(s)	298, 727
TauI	GCSGC	1 cut(s)	371
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	3 cut(s)	191, 434, 516
Tru9I	TTAA	3 cut(s)	191, 434, 516
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	3 cut(s)	13, 169, 482
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	3 cut(s)	222, 706, 762
TspGWI	ACGGA	2 cut(s)	266, 463
TspRI	CASTG	1 cut(s)	115
XapI	RAATTY	3 cut(s)	42, 236, 304
XceI	RCATGY	3 cut(s)	37, 190, 745
ZrmI	AGTACT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.