Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004628

Physical Location & Seq

Genomic Coordinates Reverse (-)

69372297 .. 69377051

Gene Structure 4755 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28143

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGAAGAATACAAATGCTGCCAGAGTTGAAGAGCCTACTGTTCGAATCACACGAGCACGGGCTAAAGCCTTTGCCACATCAGCAGAGGGCCTTGCCTCCTCAAAATCTCTTGTTAAACAAGGCCAAGGCCAGAAGCGAGCTCTTCCTGCAATTTCCAAACATGGGGCATCAGCTTCTCTAGTTTCCACCATCGGCTTGCAGCACAAAAGAAGGGCAGTGCTTAAGGATGTAACGAATTCAAATGTTGACTCGACTGATGATGCATCTCAACTTCAGGCGAGAAGAGGGCCTGCAAAGAAGGTGAAGGTAGCCTCAAATCCAAGTGTTGCCGAAGATTTTCCAATGGCTCAGGATGACATAAAAGCAAAGTTAGCTGAGGAATTATCCAAAATAAGGGTGGCTGAACCACCAGAAAAGTTGCAAGTGAAAGAAGAGCCATTACCCCAGAGCATGTGTCATGCCTTGAGACAACATGGAGGAGCAGACCTAATACAGCATTCTATTAAATCTCCTGAACTTCAGAGGCCTCAAAACAAAGAAGAATATATGGTCTGCGAGAGATTGGGATCCTCAAATGACTTGGACATCGTGGACATTGACGCAAACTTTAAAGATCCTCTAGCATGCAGCTTGTATGCCCCTGATATATACAGTAATATACGGCTTACAGAGATAGAGCGAAGACCATCAACTAATTATATGGAAAACTTGCAGCAAGATATCACTCCAAGCATGCGAGGAATTTTGATCGATTGGCTTGTGGAGGTTTCTGAAGAATATAAGCTGGTTCCTGATACACTTTACCTCACTGTGAATCTCATTGATCGCTTTCTCTCACAGAACTTTGTTGAAAAGCAAAGGCTCCAGCTGCTTGGAGTCACTTGCATGTTAATTGCCTCGAAGTATGAAGAAATTGTTGCACCACGAGTGGAAGAATTTTGTCTCATCACGGACAATACTTACTCAAGAGAAGAGGTATTAGAAATGGAGAGTGAAGTACTAAATTTCTTGCACTTCCAGTTATCTGTTCCAACCACGAAAACATTTCTTAGGAGGTTTGTTCAAGCGGCACAAGCTTGTTATAAGGTTCCTTGTGTTGAACTGGAGTTCTTGGCAAATTATTTAGCAGAGTTAACTATTGTTGAATATGGCTTCTTGAAGTTCCTACCTTCCGTCATCGCTGCCTCTGCTGTGCTCCTTGCCAGATGGACACTTAATCAGTCAGACCATCCATGGAACCCGACTTTAGAACATTATACCTCTTACAAAACATCAGAGCTCCACACTTCAGTTATTGCACTTGAAGATTTGCAATTGAACACCAAAGGCTGTTGCCTAAATGCCATACGTGAGAAGTATAGACACCAGAAGTTCAAATCTGTGGCTACCTTGATCTCTGCACAAAAGGTTGGTTCACTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008283 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:2000026 GO:2000038 GO:2000123

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

474

Amino Acids

53.32

Weight (kDa)

6.58

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	215 - 342	2.5e-48	Cyclin, N-terminal domain
Cyclin_C	PF02984	344 - 464	2.4e-35	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15570 AT5G11300 AT5G11300 AT5G25380 AT5G25380 AT5G25380 AT5G25380
fragaria_vesca	FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100
malus_domestica	MD08G1137300.v1.1 MD15G1115900.v1.1
prunus_persica	Prupe.1G467200_v2.0.a1
pyrus_communis	pycom08g11590 pycom15g10450
rosa_chinensis	RchiOBHm_Chr6g0312821
rosa_laevigata	RLG00000010295
rosa_multiflora	Rmu_co8351801.1_g000001 Rmu_sc0008049.1_g000007
rosa_roxburghii	Rroxscaffold_7G00156460
rosa_rugosa	Rorug06G0399900 Rorug06G0399900 Rorug06G0399900
rosa_samantha	Rh6AG517000 Rh6BG528400 Rh6CG533100 Rh6DG519600
rosa_wichuraiana	Rw6G044910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1083
AciI	CCGC	1 cut(s)	1067
AclWI	GGATC	3 cut(s)	561, 574, 608
AcsI	RAATTY	4 cut(s)	235, 741, 935, 1003
AcuI	CTGAAG	4 cut(s)	257, 503, 792, 1272
AfaI	GTAC	1 cut(s)	999
AfiI	CCNNNNNNNGG	2 cut(s)	162, 393
AflII	CTTAAG	1 cut(s)	221
AluBI	AGCT	8 cut(s)	140, 173, 374, 630, 784, 868, 1076, 1279
AluI	AGCT	8 cut(s)	140, 173, 374, 630, 784, 868, 1076, 1279
Alw21I	GWGCWC	4 cut(s)	58, 142, 1197, 1281
Alw26I	GTCTC	2 cut(s)	460, 947
AlwI	GGATC	3 cut(s)	561, 574, 608
AoxI	GGCC	5 cut(s)	88, 121, 127, 287, 524
ApeKI	GCWGC	6 cut(s)	17, 199, 627, 712, 868, 1181
ApoI	RAATTY	4 cut(s)	235, 741, 935, 1003
Asp700I	GAANNNNTTC	1 cut(s)	336
AspS9I	GGNCC	2 cut(s)	88, 287
AsuHPI	GGTGA	1 cut(s)	313
AsuII	TTCGAA	1 cut(s)	43
BamHI	GGATCC	1 cut(s)	566
BanII	GRGCYC	2 cut(s)	142, 1281
BarI	GAAGNNNNNNTAC	2 cut(s)	423, 455
BauI	CACGAG	2 cut(s)	51, 924
BbsI	GAAGAC	1 cut(s)	688
Bbv12I	GWGCWC	4 cut(s)	58, 142, 1197, 1281
BbvCI	CCTCAGC	1 cut(s)	375
BbvI	GCAGC	6 cut(s)	4, 211, 639, 724, 855, 1168
BccI	CCATC	4 cut(s)	197, 694, 1200, 1236
BceAI	ACGGC	1 cut(s)	677
BcoDI	GTCTC	2 cut(s)	460, 947
BfaI	CTAG	2 cut(s)	179, 620
BfrI	CTTAAG	1 cut(s)	221
BisI	GCNGC	7 cut(s)	18, 200, 628, 713, 869, 1068, 1182
BlsI	GCNGC	7 cut(s)	19, 201, 629, 714, 870, 1069, 1183
BmcAI	AGTACT	1 cut(s)	999
BmgT120I	GGNCC	2 cut(s)	88, 287
BmiI	GGNNCC	5 cut(s)	568, 789, 863, 1089, 1238
BmsI	GCATC	3 cut(s)	176, 250, 272
BpiI	GAAGAC	1 cut(s)	688
BpmI	CTGGAG	2 cut(s)	848, 1124
Bpu10I	CCTNAGC	2 cut(s)	348, 375
Bpu14I	TTCGAA	1 cut(s)	43
BpuEI	CTTGAG	2 cut(s)	484, 949
Bsa29I	ATCGAT	1 cut(s)	750
BsaAI	YACGTR	1 cut(s)	1349
BsaBI	GATNNNNATC	1 cut(s)	565
BsaJI	CCNNGG	2 cut(s)	124, 1232
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 393
Bse1I	ACTGG	2 cut(s)	1018, 1107
Bse8I	GATNNNNATC	1 cut(s)	565
BseCI	ATCGAT	1 cut(s)	750
BseDI	CCNNGG	2 cut(s)	124, 1232
BseGI	GGATG	3 cut(s)	232, 358, 1228
BseJI	GATNNNNATC	1 cut(s)	565
BseLI	CCNNNNNNNGG	2 cut(s)	162, 393
BseMII	CTCAG	2 cut(s)	362, 366
BseNI	ACTGG	2 cut(s)	1018, 1107
BseRI	GAGGAG	2 cut(s)	88, 492
BseXI	GCAGC	6 cut(s)	4, 211, 639, 724, 855, 1168
BsgI	GTGCAG	1 cut(s)	1383
BshFI	GGCC	5 cut(s)	90, 123, 129, 289, 526
BshVI	ATCGAT	1 cut(s)	750
BsiHKAI	GWGCWC	4 cut(s)	58, 142, 1197, 1281
BslI	CCNNNNNNNGG	2 cut(s)	162, 393
BsmAI	GTCTC	2 cut(s)	460, 947
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	5 cut(s)	90, 123, 129, 289, 526
Bsp119I	TTCGAA	1 cut(s)	43
Bsp1286I	GDGCHC	4 cut(s)	58, 142, 1197, 1281
Bsp143I	GATC	5 cut(s)	566, 613, 747, 823, 1392
Bsp19I	CCATGG	1 cut(s)	1232
BspACI	CCGC	1 cut(s)	1067
BspANI	GGCC	5 cut(s)	90, 123, 129, 289, 526
BspCNI	CTCAG	2 cut(s)	361, 367
BspDI	ATCGAT	1 cut(s)	750
BspLI	GGNNCC	5 cut(s)	568, 789, 863, 1089, 1238
BspPI	GGATC	3 cut(s)	561, 574, 608
BspQI	GCTCTTC	3 cut(s)	24, 147, 426
BspT104I	TTCGAA	1 cut(s)	43
BspTI	CTTAAG	1 cut(s)	221
BsrI	ACTGG	2 cut(s)	1018, 1107
BssECI	CCNNGG	2 cut(s)	124, 1232
BssMI	GATC	5 cut(s)	566, 613, 747, 823, 1392
BssSI	CACGAG	2 cut(s)	51, 924
BssT1I	CCWWGG	2 cut(s)	124, 1232
Bst2BI	CACGAG	2 cut(s)	51, 924
Bst4CI	ACNGT	3 cut(s)	40, 653, 811
Bst6I	CTCTTC	5 cut(s)	24, 147, 277, 426, 966
BstAFI	CTTAAG	1 cut(s)	221
BstBAI	YACGTR	1 cut(s)	1349
BstBI	TTCGAA	1 cut(s)	43
BstC8I	GCNNGC	5 cut(s)	138, 197, 291, 625, 734
BstDEI	CTNAG	3 cut(s)	348, 375, 1049
BstDSI	CCRYGG	1 cut(s)	1232
BstF5I	GGATG	3 cut(s)	232, 358, 1228
BstKTI	GATC	5 cut(s)	569, 616, 750, 826, 1395
BstMAI	GTCTC	2 cut(s)	460, 947
BstMBI	GATC	5 cut(s)	566, 613, 747, 823, 1392
BstMWI	GCNNNNNNNGC	6 cut(s)	80, 146, 371, 868, 1073, 1187
BstNSI	RCATGY	4 cut(s)	454, 627, 736, 889
BstV1I	GCAGC	6 cut(s)	4, 211, 639, 724, 855, 1168
BstV2I	GAAGAC	1 cut(s)	688
BstX2I	RGATCY	2 cut(s)	566, 613
BstXI	CCANNNNNNTGG	1 cut(s)	872
BstYI	RGATCY	2 cut(s)	566, 613
Bsu15I	ATCGAT	1 cut(s)	750
BsuRI	GGCC	5 cut(s)	90, 123, 129, 289, 526
BsuTUI	ATCGAT	1 cut(s)	750
BtgI	CCRYGG	1 cut(s)	1232
BtgZI	GCGATG	1 cut(s)	1162
BtsCI	GGATG	3 cut(s)	232, 358, 1228
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	2 cut(s)	222, 807
Cac8I	GCNNGC	5 cut(s)	138, 197, 291, 625, 734
Cfr13I	GGNCC	2 cut(s)	88, 287
ClaI	ATCGAT	1 cut(s)	750
CseI	GACGC	1 cut(s)	608
Csp6I	GTAC	1 cut(s)	998
CviAII	CATG	8 cut(s)	161, 451, 458, 473, 624, 733, 886, 1233
CviQI	GTAC	1 cut(s)	998
DdeI	CTNAG	3 cut(s)	348, 375, 1049
DpnI	GATC	5 cut(s)	568, 615, 749, 825, 1394
DpnII	GATC	5 cut(s)	566, 613, 747, 823, 1392
DraI	TTTAAA	1 cut(s)	610
Eam1104I	CTCTTC	5 cut(s)	24, 147, 277, 426, 966
EarI	CTCTTC	5 cut(s)	24, 147, 277, 426, 966
Ecl136II	GAGCTC	2 cut(s)	140, 1279
Eco130I	CCWWGG	2 cut(s)	124, 1232
Eco147I	AGGCCT	1 cut(s)	526
Eco24I	GRGCYC	2 cut(s)	142, 1281
Eco32I	GATATC	1 cut(s)	721
Eco53kI	GAGCTC	2 cut(s)	140, 1279
Eco57I	CTGAAG	4 cut(s)	257, 503, 792, 1272
EcoICRI	GAGCTC	2 cut(s)	140, 1279
EcoO109I	RGGNCCY	2 cut(s)	88, 287
EcoRI	GAATTC	1 cut(s)	235
EcoRV	GATATC	1 cut(s)	721
EcoT14I	CCWWGG	2 cut(s)	124, 1232
EcoT22I	ATGCAT	1 cut(s)	265
EcoT38I	GRGCYC	2 cut(s)	142, 1281
ErhI	CCWWGG	2 cut(s)	124, 1232
FaeI	CATG	8 cut(s)	164, 454, 461, 476, 627, 736, 889, 1236
FatI	CATG	8 cut(s)	160, 450, 457, 472, 623, 732, 885, 1232
Fnu4HI	GCNGC	7 cut(s)	18, 200, 628, 713, 869, 1068, 1182
FokI	GGATG	3 cut(s)	239, 365, 1215
FriOI	GRGCYC	2 cut(s)	142, 1281
Fsp4HI	GCNGC	7 cut(s)	18, 200, 628, 713, 869, 1068, 1182
FspBI	CTAG	2 cut(s)	179, 620
GluI	GCNGC	7 cut(s)	18, 200, 628, 713, 869, 1068, 1182
GsuI	CTGGAG	2 cut(s)	848, 1124
HaeIII	GGCC	5 cut(s)	90, 123, 129, 289, 526
HgaI	GACGC	1 cut(s)	608
Hin1II	CATG	8 cut(s)	164, 454, 461, 476, 627, 736, 889, 1236
HincII	GTYRAC	2 cut(s)	247, 1134
HindII	GTYRAC	2 cut(s)	247, 1134
HindIII	AAGCTT	1 cut(s)	1074
HinfI	GANTC	4 cut(s)	45, 248, 814, 876
HpaI	GTTAAC	1 cut(s)	1134
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	4 cut(s)	247, 592, 1134, 1415
Hpy188I	TCNGA	5 cut(s)	522, 772, 1225, 1276, 1424
Hpy188III	TCNNGA	5 cut(s)	350, 512, 791, 966, 1156
Hpy8I	GTNNAC	4 cut(s)	247, 592, 1134, 1415
HpyAV	CCTTC	4 cut(s)	204, 292, 298, 1179
HpyCH4III	ACNGT	3 cut(s)	40, 653, 811
HpyCH4IV	ACGT	1 cut(s)	1348
HpyF10VI	GCNNNNNNNGC	6 cut(s)	80, 146, 371, 868, 1073, 1187
HpyF3I	CTNAG	3 cut(s)	348, 375, 1049
HpySE526I	ACGT	1 cut(s)	1348
Hsp92II	CATG	8 cut(s)	164, 454, 461, 476, 627, 736, 889, 1236
KspAI	GTTAAC	1 cut(s)	1134
Kzo9I	GATC	5 cut(s)	566, 613, 747, 823, 1392
LguI	GCTCTTC	3 cut(s)	24, 147, 426
LmnI	GCTCC	4 cut(s)	479, 867, 1200, 1284
Lsp1109I	GCAGC	6 cut(s)	4, 211, 639, 724, 855, 1168
LweI	GCATC	3 cut(s)	176, 250, 272
MaeI	CTAG	2 cut(s)	179, 620
MaeII	ACGT	1 cut(s)	1348
MaeIII	GTNAC	2 cut(s)	229, 877
MalI	GATC	5 cut(s)	568, 615, 749, 825, 1394
MboI	GATC	5 cut(s)	566, 613, 747, 823, 1392
MfeI	CAATTG	1 cut(s)	1313
MflI	RGATCY	2 cut(s)	566, 613
MhlI	GDGCHC	4 cut(s)	58, 142, 1197, 1281
MlyI	GAGTC	2 cut(s)	242, 885
MmeI	TCCRAC	1 cut(s)	1055
Mph1103I	ATGCAT	1 cut(s)	265
MroXI	GAANNNNTTC	1 cut(s)	336
MseI	TTAA	7 cut(s)	114, 222, 504, 609, 890, 1133, 1215
MslI	CAYNNNNRTG	1 cut(s)	884
MspA1I	CMGCKG	1 cut(s)	868
MspCI	CTTAAG	1 cut(s)	221
MunI	CAATTG	1 cut(s)	1313
Mva1269I	GAATGC	1 cut(s)	496
MwoI	GCNNNNNNNGC	6 cut(s)	80, 146, 371, 868, 1073, 1187
NcoI	CCATGG	1 cut(s)	1232
NdeII	GATC	5 cut(s)	566, 613, 747, 823, 1392
NlaIII	CATG	8 cut(s)	164, 454, 461, 476, 627, 736, 889, 1236
NlaIV	GGNNCC	5 cut(s)	568, 789, 863, 1089, 1238
NmuCI	GTSAC	1 cut(s)	877
NsiI	ATGCAT	1 cut(s)	265
NspI	RCATGY	4 cut(s)	454, 627, 736, 889
NspV	TTCGAA	1 cut(s)	43
PaeI	GCATGC	2 cut(s)	627, 736
PceI	AGGCCT	1 cut(s)	526
PciSI	GCTCTTC	3 cut(s)	24, 147, 426
PcsI	WCGNNNNNNNCGW	1 cut(s)	49
PctI	GAATGC	1 cut(s)	496
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	2 cut(s)	45, 814
PkrI	GCNGC	7 cut(s)	19, 201, 629, 714, 870, 1069, 1183
PleI	GAGTC	2 cut(s)	242, 884
PpsI	GAGTC	2 cut(s)	242, 884
Ppu21I	YACGTR	1 cut(s)	1349
PsiI	TTATAA	1 cut(s)	1083
Psp124BI	GAGCTC	2 cut(s)	142, 1281
PspN4I	GGNNCC	5 cut(s)	568, 789, 863, 1089, 1238
PspPI	GGNCC	2 cut(s)	88, 287
PsuI	RGATCY	2 cut(s)	566, 613
PvuII	CAGCTG	1 cut(s)	868
RsaI	GTAC	1 cut(s)	999
RsaNI	GTAC	1 cut(s)	998
RseI	CAYNNNNRTG	1 cut(s)	884
SacI	GAGCTC	2 cut(s)	142, 1281
SapI	GCTCTTC	3 cut(s)	24, 147, 426
SaqAI	TTAA	7 cut(s)	114, 222, 504, 609, 890, 1133, 1215
SatI	GCNGC	7 cut(s)	18, 200, 628, 713, 869, 1068, 1182
Sau3AI	GATC	5 cut(s)	566, 613, 747, 823, 1392
Sau96I	GGNCC	2 cut(s)	88, 287
ScaI	AGTACT	1 cut(s)	999
SchI	GAGTC	2 cut(s)	242, 885
SduI	GDGCHC	4 cut(s)	58, 142, 1197, 1281
SfaNI	GCATC	3 cut(s)	176, 250, 272
SfuI	TTCGAA	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	884
SmlI	CTYRAG	3 cut(s)	221, 463, 964
SmoI	CTYRAG	3 cut(s)	221, 463, 964
SphI	GCATGC	2 cut(s)	627, 736
SseBI	AGGCCT	1 cut(s)	526
SsiI	CCGC	1 cut(s)	1067
SspMI	CTAG	2 cut(s)	179, 620
SstI	GAGCTC	2 cut(s)	142, 1281
StuI	AGGCCT	1 cut(s)	526
StyI	CCWWGG	2 cut(s)	124, 1232
TaaI	ACNGT	3 cut(s)	40, 653, 811
TaiI	ACGT	1 cut(s)	1351
TaqI	TCGA	4 cut(s)	43, 251, 750, 899
TatI	WGTACW	1 cut(s)	997
TauI	GCSGC	1 cut(s)	1070
TfiI	GAWTC	2 cut(s)	45, 814
Tru1I	TTAA	7 cut(s)	114, 222, 504, 609, 890, 1133, 1215
Tru9I	TTAA	7 cut(s)	114, 222, 504, 609, 890, 1133, 1215
TscAI	CASTG	2 cut(s)	222, 814
TseFI	GTSAC	1 cut(s)	877
TseI	GCWGC	6 cut(s)	17, 199, 627, 712, 868, 1181
Tsp45I	GTSAC	1 cut(s)	877
TspDTI	ATGAA	2 cut(s)	17, 921
TspGWI	ACGGA	2 cut(s)	965, 1162
TspRI	CASTG	2 cut(s)	222, 814
Vha464I	CTTAAG	1 cut(s)	221
XapI	RAATTY	4 cut(s)	235, 741, 935, 1003
XceI	RCATGY	4 cut(s)	454, 627, 736, 889
XcmI	CCANNNNNNNNNTGG	1 cut(s)	394
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	2 cut(s)	179, 620
ZrmI	AGTACT	1 cut(s)	999
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.