Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004628

Physical Location & Seq

Genomic Coordinates Reverse (-)

66992616 .. 66997565

Gene Structure 4950 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG519600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGAAGAATAAGGAAAATACAAGGCATGCTGCCAGAGTTGAAGAGCCTACTGTTCGAATCACACGAGCACGGGCTAAAGCCTTTGCCACATCAGCAGCAGAGGGCCTCTGCCTTGCCTCCTCCTCAAAATCTCTTCTTAAACAAGGCCAGAAGCGAGCTCTTCCAGCAAATTCCAAACACGGGGGGGCATCAGCTTCTCTAGTTTCCACCATCGGCTTGCAGCACAAAAGAAGGGCAGTGCTTAAAGATGTAACGAATTCAAATGTCGACTGGAGTGATGATGCATCTCAACTTCAGCCTGGCAAGCAGGCGAGAAGAGGGCCTGCAAACAAGGTGAAGGTAGCCTCAAATCCAAGTGTTGCTGAACATTTTCCAATGGCTCAGGATGACATAAAAACAAAGTTAGCTGAGGAATTATCCAAAATAAGGGTGGCTGAACCACCAGAAAAGTTGCAAGTGAAAGAAGAGCCATTACCCCAGAGCATGTGTCATGCCTTGAGACAACATGGAGGAGCAGACCTAATACAGCATTCCATTAAATCTGCTCAACTTCAGAGGCCTCAAAAGAAAGAAGAATATATGGTCTGCGAGAGATTGGGATCCTCAAATGACTTGGACATCGTGGACATTGACGCAAACTTAAAAGATCCTCTAGCATGCAGCTTGTATGCCCCTGATATATACAGTAATATACGGCTTACAGAGATAGAGCGAAGACCATCAACTAATTATATGGAAACCTTGCAGCAAGATATCACTCCAAGCATGCGAGGAATTTTGATTGATTGGCTTGTGGAGGTTTCTGAAGAATATAAGCTGGTTCCTGATACACTTTACCTCACTGTGAATCTCATTGATCGCTTTCTCTCACAGAACTTTGTTGAAAAGCAAAGGCTCCAGCTGCTTGGAGTCACTTGCATGTTAATTGCCTCGAAGTATGAAGAAATTGTTGCACCACGAGTGGAAGAATTTTGTCTCATCACGGACAATACTTACTCAAGAGAAGAGGTATTAGAAATGGAGAGTGAAGTACTAAATTTCTTGCACTTCCAGTTATCTGTTCCAACCACGAAAACATTTCTTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008283 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:2000026 GO:2000038 GO:2000123

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

362

Amino Acids

40.7

Weight (kDa)

7.09

Isoelectric Point (pI)

56.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	226 - 353	2e-48	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15570 AT5G11300 AT5G11300 AT5G25380 AT5G25380 AT5G25380 AT5G25380
fragaria_vesca	FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100
malus_domestica	MD08G1137300.v1.1 MD15G1115900.v1.1
prunus_persica	Prupe.1G467200_v2.0.a1
pyrus_communis	pycom08g11590 pycom15g10450
rosa_chinensis	RchiOBHm_Chr6g0312821
rosa_laevigata	RLG00000010295
rosa_multiflora	Rmu_co8351801.1_g000001 Rmu_sc0008049.1_g000007
rosa_roxburghii	Rroxscaffold_7G00156460
rosa_rugosa	Rorug06G0399900 Rorug06G0399900 Rorug06G0399900
rosa_samantha	Rh6AG517000 Rh6BG528400 Rh6CG533100 Rh6DG519600
rosa_wichuraiana	Rw6G044910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	267
AclWI	GGATC	3 cut(s)	594, 607, 641
AcsI	RAATTY	5 cut(s)	169, 256, 774, 968, 1036
AcuI	CTGAAG	3 cut(s)	278, 536, 825
AfaI	GTAC	1 cut(s)	1032
AfiI	CCNNNNNNNGG	2 cut(s)	180, 426
AgsI	TTSAA	3 cut(s)	41, 261, 884
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	6 cut(s)	158, 194, 407, 663, 817, 901
AluI	AGCT	6 cut(s)	158, 194, 407, 663, 817, 901
Alw21I	GWGCWC	2 cut(s)	70, 160
Alw26I	GTCTC	2 cut(s)	493, 980
AlwI	GGATC	3 cut(s)	594, 607, 641
AoxI	GGCC	4 cut(s)	103, 145, 320, 557
ApeKI	GCWGC	6 cut(s)	29, 95, 220, 660, 745, 901
ApoI	RAATTY	5 cut(s)	169, 256, 774, 968, 1036
Asp700I	GAANNNNTTC	1 cut(s)	369
AspS9I	GGNCC	2 cut(s)	103, 320
AsuHPI	GGTGA	1 cut(s)	346
AsuII	TTCGAA	1 cut(s)	55
BamHI	GGATCC	1 cut(s)	599
BanII	GRGCYC	1 cut(s)	160
BarI	GAAGNNNNNNTAC	2 cut(s)	456, 488
BauI	CACGAG	2 cut(s)	63, 957
BbsI	GAAGAC	1 cut(s)	721
Bbv12I	GWGCWC	2 cut(s)	70, 160
BbvCI	CCTCAGC	1 cut(s)	408
BbvI	GCAGC	6 cut(s)	16, 107, 232, 672, 757, 888
BccI	CCATC	2 cut(s)	218, 727
BceAI	ACGGC	1 cut(s)	710
BciT130I	CCWGG	1 cut(s)	300
BcoDI	GTCTC	2 cut(s)	493, 980
BfaI	CTAG	2 cut(s)	200, 653
BisI	GCNGC	6 cut(s)	30, 96, 221, 661, 746, 902
BlsI	GCNGC	6 cut(s)	31, 97, 222, 662, 747, 903
BmcAI	AGTACT	1 cut(s)	1032
Bme1390I	CCNGG	1 cut(s)	300
BmgT120I	GGNCC	2 cut(s)	103, 320
BmiI	GGNNCC	3 cut(s)	601, 822, 896
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	3 cut(s)	197, 271, 293
BpiI	GAAGAC	1 cut(s)	721
BpmI	CTGGAG	2 cut(s)	292, 881
Bpu10I	CCTNAGC	2 cut(s)	381, 408
Bpu14I	TTCGAA	1 cut(s)	55
BpuEI	CTTGAG	2 cut(s)	517, 982
BsaBI	GATNNNNATC	1 cut(s)	598
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 426
Bse1I	ACTGG	2 cut(s)	275, 1051
Bse8I	GATNNNNATC	1 cut(s)	598
BseBI	CCWGG	1 cut(s)	300
BseGI	GGATG	1 cut(s)	391
BseJI	GATNNNNATC	1 cut(s)	598
BseLI	CCNNNNNNNGG	2 cut(s)	180, 426
BseMII	CTCAG	2 cut(s)	395, 399
BseNI	ACTGG	2 cut(s)	275, 1051
BseRI	GAGGAG	3 cut(s)	109, 112, 525
BseXI	GCAGC	6 cut(s)	16, 107, 232, 672, 757, 888
BshFI	GGCC	4 cut(s)	105, 147, 322, 559
BsiHKAI	GWGCWC	2 cut(s)	70, 160
BslI	CCNNNNNNNGG	2 cut(s)	180, 426
BsmAI	GTCTC	2 cut(s)	493, 980
BsmI	GAATGC	1 cut(s)	529
BsnI	GGCC	4 cut(s)	105, 147, 322, 559
Bsp119I	TTCGAA	1 cut(s)	55
Bsp1286I	GDGCHC	2 cut(s)	70, 160
Bsp143I	GATC	3 cut(s)	599, 646, 856
BspANI	GGCC	4 cut(s)	105, 147, 322, 559
BspCNI	CTCAG	2 cut(s)	394, 400
BspLI	GGNNCC	3 cut(s)	601, 822, 896
BspPI	GGATC	3 cut(s)	594, 607, 641
BspQI	GCTCTTC	3 cut(s)	36, 165, 459
BspT104I	TTCGAA	1 cut(s)	55
BsrI	ACTGG	2 cut(s)	275, 1051
BssMI	GATC	3 cut(s)	599, 646, 856
BssSI	CACGAG	2 cut(s)	63, 957
Bst2BI	CACGAG	2 cut(s)	63, 957
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	3 cut(s)	52, 686, 844
Bst6I	CTCTTC	6 cut(s)	36, 138, 165, 310, 459, 999
BstBI	TTCGAA	1 cut(s)	55
BstC8I	GCNNGC	8 cut(s)	27, 156, 218, 305, 309, 324, 658, 767
BstDEI	CTNAG	3 cut(s)	381, 408, 1082
BstF5I	GGATG	1 cut(s)	391
BstKTI	GATC	3 cut(s)	602, 649, 859
BstMAI	GTCTC	2 cut(s)	493, 980
BstMBI	GATC	3 cut(s)	599, 646, 856
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 164, 304, 901
BstNI	CCWGG	1 cut(s)	300
BstNSI	RCATGY	5 cut(s)	29, 487, 660, 769, 922
BstSCI	CCNGG	1 cut(s)	298
BstV1I	GCAGC	6 cut(s)	16, 107, 232, 672, 757, 888
BstV2I	GAAGAC	1 cut(s)	721
BstX2I	RGATCY	2 cut(s)	599, 646
BstXI	CCANNNNNNTGG	1 cut(s)	905
BstYI	RGATCY	2 cut(s)	599, 646
BsuRI	GGCC	4 cut(s)	105, 147, 322, 559
BtsCI	GGATG	1 cut(s)	391
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	2 cut(s)	243, 840
Cac8I	GCNNGC	8 cut(s)	27, 156, 218, 305, 309, 324, 658, 767
Cfr13I	GGNCC	2 cut(s)	103, 320
CseI	GACGC	1 cut(s)	641
Csp6I	GTAC	1 cut(s)	1031
CviAII	CATG	7 cut(s)	26, 484, 491, 506, 657, 766, 919
CviQI	GTAC	1 cut(s)	1031
DdeI	CTNAG	3 cut(s)	381, 408, 1082
DpnI	GATC	3 cut(s)	601, 648, 858
DpnII	GATC	3 cut(s)	599, 646, 856
Eam1104I	CTCTTC	6 cut(s)	36, 138, 165, 310, 459, 999
EarI	CTCTTC	6 cut(s)	36, 138, 165, 310, 459, 999
Ecl136II	GAGCTC	1 cut(s)	158
Eco147I	AGGCCT	1 cut(s)	559
Eco24I	GRGCYC	1 cut(s)	160
Eco32I	GATATC	1 cut(s)	754
Eco53kI	GAGCTC	1 cut(s)	158
Eco57I	CTGAAG	3 cut(s)	278, 536, 825
EcoICRI	GAGCTC	1 cut(s)	158
EcoO109I	RGGNCCY	2 cut(s)	103, 320
EcoRI	GAATTC	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	298
EcoRV	GATATC	1 cut(s)	754
EcoT22I	ATGCAT	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	160
FaeI	CATG	7 cut(s)	29, 487, 494, 509, 660, 769, 922
FatI	CATG	7 cut(s)	25, 483, 490, 505, 656, 765, 918
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	6 cut(s)	30, 96, 221, 661, 746, 902
FokI	GGATG	1 cut(s)	398
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	6 cut(s)	30, 96, 221, 661, 746, 902
FspBI	CTAG	2 cut(s)	200, 653
GluI	GCNGC	6 cut(s)	30, 96, 221, 661, 746, 902
GsuI	CTGGAG	2 cut(s)	292, 881
HaeIII	GGCC	4 cut(s)	105, 147, 322, 559
HgaI	GACGC	1 cut(s)	641
Hin1II	CATG	7 cut(s)	29, 487, 494, 509, 660, 769, 922
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	3 cut(s)	57, 847, 909
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	2 cut(s)	268, 625
Hpy188I	TCNGA	2 cut(s)	555, 805
Hpy188III	TCNNGA	3 cut(s)	383, 824, 999
Hpy8I	GTNNAC	2 cut(s)	268, 625
HpyAV	CCTTC	2 cut(s)	225, 331
HpyCH4III	ACNGT	3 cut(s)	52, 686, 844
HpyCH4V	TGCA	9 cut(s)	220, 284, 326, 454, 660, 745, 918, 953, 1045
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 164, 304, 901
HpyF3I	CTNAG	3 cut(s)	381, 408, 1082
Hsp92II	CATG	7 cut(s)	29, 487, 494, 509, 660, 769, 922
Kzo9I	GATC	3 cut(s)	599, 646, 856
LguI	GCTCTTC	3 cut(s)	36, 165, 459
LmnI	GCTCC	2 cut(s)	512, 900
Lsp1109I	GCAGC	6 cut(s)	16, 107, 232, 672, 757, 888
LweI	GCATC	3 cut(s)	197, 271, 293
MaeI	CTAG	2 cut(s)	200, 653
MaeIII	GTNAC	2 cut(s)	250, 910
MalI	GATC	3 cut(s)	601, 648, 858
MboI	GATC	3 cut(s)	599, 646, 856
MflI	RGATCY	2 cut(s)	599, 646
MhlI	GDGCHC	2 cut(s)	70, 160
MluCI	AATT	9 cut(s)	169, 256, 413, 727, 774, 924, 945, 968, 1036
MlyI	GAGTC	1 cut(s)	918
MmeI	TCCRAC	1 cut(s)	1088
Mph1103I	ATGCAT	1 cut(s)	286
MroXI	GAANNNNTTC	1 cut(s)	369
MseI	TTAA	5 cut(s)	138, 243, 537, 641, 923
MslI	CAYNNNNRTG	1 cut(s)	917
MspA1I	CMGCKG	1 cut(s)	901
MspR9I	CCNGG	1 cut(s)	300
Mva1269I	GAATGC	1 cut(s)	529
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	4 cut(s)	92, 164, 304, 901
NdeII	GATC	3 cut(s)	599, 646, 856
NlaIII	CATG	7 cut(s)	29, 487, 494, 509, 660, 769, 922
NlaIV	GGNNCC	3 cut(s)	601, 822, 896
NmuCI	GTSAC	1 cut(s)	910
NsiI	ATGCAT	1 cut(s)	286
NspI	RCATGY	5 cut(s)	29, 487, 660, 769, 922
NspV	TTCGAA	1 cut(s)	55
PaeI	GCATGC	3 cut(s)	29, 660, 769
PceI	AGGCCT	1 cut(s)	559
PciSI	GCTCTTC	3 cut(s)	36, 165, 459
PcsI	WCGNNNNNNNCGW	1 cut(s)	61
PctI	GAATGC	1 cut(s)	529
PdmI	GAANNNNTTC	1 cut(s)	369
PfeI	GAWTC	2 cut(s)	57, 847
PkrI	GCNGC	6 cut(s)	31, 97, 222, 662, 747, 903
PleI	GAGTC	1 cut(s)	917
PpsI	GAGTC	1 cut(s)	917
Psp124BI	GAGCTC	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	3 cut(s)	601, 822, 896
PspPI	GGNCC	2 cut(s)	103, 320
PsuI	RGATCY	2 cut(s)	599, 646
PvuII	CAGCTG	1 cut(s)	901
RsaI	GTAC	1 cut(s)	1032
RsaNI	GTAC	1 cut(s)	1031
RseI	CAYNNNNRTG	1 cut(s)	917
SacI	GAGCTC	1 cut(s)	160
SalI	GTCGAC	1 cut(s)	266
SapI	GCTCTTC	3 cut(s)	36, 165, 459
SaqAI	TTAA	5 cut(s)	138, 243, 537, 641, 923
SatI	GCNGC	6 cut(s)	30, 96, 221, 661, 746, 902
Sau3AI	GATC	3 cut(s)	599, 646, 856
Sau96I	GGNCC	2 cut(s)	103, 320
ScaI	AGTACT	1 cut(s)	1032
SchI	GAGTC	1 cut(s)	918
ScrFI	CCNGG	1 cut(s)	300
SduI	GDGCHC	2 cut(s)	70, 160
SfaNI	GCATC	3 cut(s)	197, 271, 293
SfuI	TTCGAA	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	917
SmlI	CTYRAG	2 cut(s)	496, 997
SmoI	CTYRAG	2 cut(s)	496, 997
SphI	GCATGC	3 cut(s)	29, 660, 769
Sse9I	AATT	9 cut(s)	169, 256, 413, 727, 774, 924, 945, 968, 1036
SseBI	AGGCCT	1 cut(s)	559
SspMI	CTAG	2 cut(s)	200, 653
SstI	GAGCTC	1 cut(s)	160
StuI	AGGCCT	1 cut(s)	559
StyD4I	CCNGG	1 cut(s)	298
TaaI	ACNGT	3 cut(s)	52, 686, 844
TaqI	TCGA	3 cut(s)	55, 267, 932
TasI	AATT	9 cut(s)	169, 256, 413, 727, 774, 924, 945, 968, 1036
TatI	WGTACW	1 cut(s)	1030
TfiI	GAWTC	2 cut(s)	57, 847
Tru1I	TTAA	5 cut(s)	138, 243, 537, 641, 923
Tru9I	TTAA	5 cut(s)	138, 243, 537, 641, 923
TscAI	CASTG	2 cut(s)	243, 847
TseFI	GTSAC	1 cut(s)	910
TseI	GCWGC	6 cut(s)	29, 95, 220, 660, 745, 901
Tsp45I	GTSAC	1 cut(s)	910
TspDTI	ATGAA	2 cut(s)	17, 954
TspGWI	ACGGA	1 cut(s)	998
TspRI	CASTG	2 cut(s)	243, 847
XapI	RAATTY	5 cut(s)	169, 256, 774, 968, 1036
XceI	RCATGY	5 cut(s)	29, 487, 660, 769, 922
XcmI	CCANNNNNNNNNTGG	1 cut(s)	427
XmiI	GTMKAC	1 cut(s)	267
XmnI	GAANNNNTTC	1 cut(s)	369
XspI	CTAG	2 cut(s)	200, 653
ZrmI	AGTACT	1 cut(s)	1032
Zsp2I	ATGCAT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.