Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004628

Physical Location & Seq

Genomic Coordinates Reverse (-)

68648774 .. 68652283

Gene Structure 3510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG517000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGAAGAATACAAATGCTGCCAGAGTTGAAGAGCCTACTGTTCGAATCACACGAGCACGGGCTAAAGCCTTTGCCACATCAGCAGAGGGCCTTGCCTCCTCAAAATCTCTTGTTAAACAAGGCCAAGGCCAGAAGCGAGCTCTTCCTGCAATTTCCAAACATGGGGCATCAGCTTCTCTAGTTTCCACCATCGGCTTGCAGCACAAAAGAAGGGCAGTGCTTAAGGATGTAACGAATTCAAATGTTGACTCGACTGATGATGCATCTCAACTTCAGGCGAGAAGAGGGCCTGCAAAGAAGGTGAAGGTAGCCTCAAATCCAAGTGTTGCCGAAGATTTTCCAATGGCTCAGGATGACATAAAAGCAAAGTTAGCTGAGGAATTATCCAAAATAAGGGTGGCTGAACCACCAGAAAAGTTGCAAGTGAAAGAAGAGCCATTACCCCAGAGCATGTGTCATGCCTTGAGACAACATGGAGGAGCAGACCTAATACAGCATTCTATTAAATCTCCTGAACTTCAGAGGCCTCAAAACAAAGAAGAATATATGGTCTGCGAGAGATTGGGATCCTCAAATGACTTGGACATCGTGGACATTGACGCAAACTTTAAAGATCCTCTAGCATGCAGCTTGTATGCCCCTGATATATACAGTAATATACGGCTTACAGAGATAGAGCGAAGACCATCAACTAATTATATGGAAAACTTGCAGCAAGATATCACTCCAAGCATGCGAGGAATTTTGATCGATTGGCTTGTGGAGGTATTAGAAATGGAGAGTGAAGTACTAAATTTCTTGCACTTCCAGTTATCTGTTCCAACCACGAAAACATTTCTTAGGAGGTTTGTTCAAGCGGCACAAGCTTGTTATAAGGTTCCTTGTGTTGAACTGGAGTTCTTGGCAAATTATTTAGCAGAGTTAACTATTGTTGAATATGGCTTCTTGAAGTTCCTACCTTCCGTCATCGCTGCCTCTGCTGTGCTCCTTGCCAGATGGACACTTAATCAGTCAGACCATCCATGGAACCCGACTTTAGAACATTATACCTCTTACAAAACATCAGAGCTCCACACTTCAGTTATTGCACTTGAAGATTTGCAATTGAACACCAAAGGCTGTTGCCTAAATGCCATACGTGAGAAGTATAGACACCAGAAGTTCAAATCTGTGGCTACCTTGATCTCTGCACAAAAGGTTGGTTCACTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008283 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:2000026 GO:2000038 GO:2000123

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

404

Amino Acids

45.12

Weight (kDa)

8.34

Isoelectric Point (pI)

49.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	215 - 260	3.6e-08	Cyclin, N-terminal domain
Cyclin_C	PF02984	274 - 394	1.8e-35	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15570 AT5G11300 AT5G11300 AT5G25380 AT5G25380 AT5G25380 AT5G25380
fragaria_vesca	FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100
malus_domestica	MD08G1137300.v1.1 MD15G1115900.v1.1
prunus_persica	Prupe.1G467200_v2.0.a1
pyrus_communis	pycom08g11590 pycom15g10450
rosa_chinensis	RchiOBHm_Chr6g0312821
rosa_laevigata	RLG00000010295
rosa_multiflora	Rmu_co8351801.1_g000001 Rmu_sc0008049.1_g000007
rosa_roxburghii	Rroxscaffold_7G00156460
rosa_rugosa	Rorug06G0399900 Rorug06G0399900 Rorug06G0399900
rosa_samantha	Rh6AG517000 Rh6BG528400 Rh6CG533100 Rh6DG519600
rosa_wichuraiana	Rw6G044910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	873
AciI	CCGC	1 cut(s)	857
AclWI	GGATC	3 cut(s)	561, 574, 608
AcsI	RAATTY	3 cut(s)	235, 741, 793
AcuI	CTGAAG	3 cut(s)	257, 503, 1062
AfaI	GTAC	1 cut(s)	789
AfiI	CCNNNNNNNGG	2 cut(s)	162, 393
AflII	CTTAAG	1 cut(s)	221
AgsI	TTSAA	9 cut(s)	29, 240, 854, 890, 935, 949, 1094, 1108, 1165
AluBI	AGCT	6 cut(s)	140, 173, 374, 630, 866, 1069
AluI	AGCT	6 cut(s)	140, 173, 374, 630, 866, 1069
Alw21I	GWGCWC	4 cut(s)	58, 142, 987, 1071
Alw26I	GTCTC	1 cut(s)	460
AlwI	GGATC	3 cut(s)	561, 574, 608
AoxI	GGCC	5 cut(s)	88, 121, 127, 287, 524
ApeKI	GCWGC	5 cut(s)	17, 199, 627, 712, 971
ApoI	RAATTY	3 cut(s)	235, 741, 793
Asp700I	GAANNNNTTC	1 cut(s)	336
AspS9I	GGNCC	2 cut(s)	88, 287
AsuHPI	GGTGA	1 cut(s)	313
AsuII	TTCGAA	1 cut(s)	43
BamHI	GGATCC	1 cut(s)	566
BanII	GRGCYC	2 cut(s)	142, 1071
BarI	GAAGNNNNNNTAC	2 cut(s)	423, 455
BauI	CACGAG	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	688
Bbv12I	GWGCWC	4 cut(s)	58, 142, 987, 1071
BbvCI	CCTCAGC	1 cut(s)	375
BbvI	GCAGC	5 cut(s)	4, 211, 639, 724, 958
BccI	CCATC	4 cut(s)	197, 694, 990, 1026
BceAI	ACGGC	1 cut(s)	677
BcoDI	GTCTC	1 cut(s)	460
BfaI	CTAG	2 cut(s)	179, 620
BfrI	CTTAAG	1 cut(s)	221
BisI	GCNGC	6 cut(s)	18, 200, 628, 713, 858, 972
BlsI	GCNGC	6 cut(s)	19, 201, 629, 714, 859, 973
BmcAI	AGTACT	1 cut(s)	789
BmgT120I	GGNCC	2 cut(s)	88, 287
BmiI	GGNNCC	3 cut(s)	568, 879, 1028
BmsI	GCATC	3 cut(s)	176, 250, 272
BpiI	GAAGAC	1 cut(s)	688
BpmI	CTGGAG	1 cut(s)	914
Bpu10I	CCTNAGC	2 cut(s)	348, 375
Bpu14I	TTCGAA	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	484
Bsa29I	ATCGAT	1 cut(s)	750
BsaAI	YACGTR	1 cut(s)	1139
BsaBI	GATNNNNATC	1 cut(s)	565
BsaJI	CCNNGG	2 cut(s)	124, 1022
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 393
Bse1I	ACTGG	2 cut(s)	808, 897
Bse8I	GATNNNNATC	1 cut(s)	565
BseCI	ATCGAT	1 cut(s)	750
BseDI	CCNNGG	2 cut(s)	124, 1022
BseGI	GGATG	3 cut(s)	232, 358, 1018
BseJI	GATNNNNATC	1 cut(s)	565
BseLI	CCNNNNNNNGG	2 cut(s)	162, 393
BseMII	CTCAG	2 cut(s)	362, 366
BseNI	ACTGG	2 cut(s)	808, 897
BseRI	GAGGAG	2 cut(s)	88, 492
BseXI	GCAGC	5 cut(s)	4, 211, 639, 724, 958
BsgI	GTGCAG	1 cut(s)	1173
BshFI	GGCC	5 cut(s)	90, 123, 129, 289, 526
BshVI	ATCGAT	1 cut(s)	750
BsiHKAI	GWGCWC	4 cut(s)	58, 142, 987, 1071
BslI	CCNNNNNNNGG	2 cut(s)	162, 393
BsmAI	GTCTC	1 cut(s)	460
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	5 cut(s)	90, 123, 129, 289, 526
Bsp119I	TTCGAA	1 cut(s)	43
Bsp1286I	GDGCHC	4 cut(s)	58, 142, 987, 1071
Bsp143I	GATC	4 cut(s)	566, 613, 747, 1182
Bsp19I	CCATGG	1 cut(s)	1022
BspACI	CCGC	1 cut(s)	857
BspANI	GGCC	5 cut(s)	90, 123, 129, 289, 526
BspCNI	CTCAG	2 cut(s)	361, 367
BspDI	ATCGAT	1 cut(s)	750
BspLI	GGNNCC	3 cut(s)	568, 879, 1028
BspPI	GGATC	3 cut(s)	561, 574, 608
BspQI	GCTCTTC	3 cut(s)	24, 147, 426
BspT104I	TTCGAA	1 cut(s)	43
BspTI	CTTAAG	1 cut(s)	221
BsrI	ACTGG	2 cut(s)	808, 897
BssECI	CCNNGG	2 cut(s)	124, 1022
BssMI	GATC	4 cut(s)	566, 613, 747, 1182
BssSI	CACGAG	1 cut(s)	51
BssT1I	CCWWGG	2 cut(s)	124, 1022
Bst2BI	CACGAG	1 cut(s)	51
Bst4CI	ACNGT	2 cut(s)	40, 653
Bst6I	CTCTTC	4 cut(s)	24, 147, 277, 426
BstAFI	CTTAAG	1 cut(s)	221
BstBAI	YACGTR	1 cut(s)	1139
BstBI	TTCGAA	1 cut(s)	43
BstC8I	GCNNGC	5 cut(s)	138, 197, 291, 625, 734
BstDEI	CTNAG	3 cut(s)	348, 375, 839
BstDSI	CCRYGG	1 cut(s)	1022
BstF5I	GGATG	3 cut(s)	232, 358, 1018
BstKTI	GATC	4 cut(s)	569, 616, 750, 1185
BstMAI	GTCTC	1 cut(s)	460
BstMBI	GATC	4 cut(s)	566, 613, 747, 1182
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 146, 371, 863, 977
BstNSI	RCATGY	3 cut(s)	454, 627, 736
BstV1I	GCAGC	5 cut(s)	4, 211, 639, 724, 958
BstV2I	GAAGAC	1 cut(s)	688
BstX2I	RGATCY	2 cut(s)	566, 613
BstYI	RGATCY	2 cut(s)	566, 613
Bsu15I	ATCGAT	1 cut(s)	750
BsuRI	GGCC	5 cut(s)	90, 123, 129, 289, 526
BsuTUI	ATCGAT	1 cut(s)	750
BtgI	CCRYGG	1 cut(s)	1022
BtgZI	GCGATG	1 cut(s)	952
BtsCI	GGATG	3 cut(s)	232, 358, 1018
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	5 cut(s)	138, 197, 291, 625, 734
Cfr13I	GGNCC	2 cut(s)	88, 287
ClaI	ATCGAT	1 cut(s)	750
CseI	GACGC	1 cut(s)	608
Csp6I	GTAC	1 cut(s)	788
CviAII	CATG	7 cut(s)	161, 451, 458, 473, 624, 733, 1023
CviQI	GTAC	1 cut(s)	788
DdeI	CTNAG	3 cut(s)	348, 375, 839
DpnI	GATC	4 cut(s)	568, 615, 749, 1184
DpnII	GATC	4 cut(s)	566, 613, 747, 1182
DraI	TTTAAA	1 cut(s)	610
Eam1104I	CTCTTC	4 cut(s)	24, 147, 277, 426
EarI	CTCTTC	4 cut(s)	24, 147, 277, 426
Ecl136II	GAGCTC	2 cut(s)	140, 1069
Eco130I	CCWWGG	2 cut(s)	124, 1022
Eco147I	AGGCCT	1 cut(s)	526
Eco24I	GRGCYC	2 cut(s)	142, 1071
Eco32I	GATATC	1 cut(s)	721
Eco53kI	GAGCTC	2 cut(s)	140, 1069
Eco57I	CTGAAG	3 cut(s)	257, 503, 1062
EcoICRI	GAGCTC	2 cut(s)	140, 1069
EcoO109I	RGGNCCY	2 cut(s)	88, 287
EcoRI	GAATTC	1 cut(s)	235
EcoRV	GATATC	1 cut(s)	721
EcoT14I	CCWWGG	2 cut(s)	124, 1022
EcoT22I	ATGCAT	1 cut(s)	265
EcoT38I	GRGCYC	2 cut(s)	142, 1071
ErhI	CCWWGG	2 cut(s)	124, 1022
FaeI	CATG	7 cut(s)	164, 454, 461, 476, 627, 736, 1026
FatI	CATG	7 cut(s)	160, 450, 457, 472, 623, 732, 1022
Fnu4HI	GCNGC	6 cut(s)	18, 200, 628, 713, 858, 972
FokI	GGATG	3 cut(s)	239, 365, 1005
FriOI	GRGCYC	2 cut(s)	142, 1071
Fsp4HI	GCNGC	6 cut(s)	18, 200, 628, 713, 858, 972
FspBI	CTAG	2 cut(s)	179, 620
GluI	GCNGC	6 cut(s)	18, 200, 628, 713, 858, 972
GsuI	CTGGAG	1 cut(s)	914
HaeIII	GGCC	5 cut(s)	90, 123, 129, 289, 526
HgaI	GACGC	1 cut(s)	608
Hin1II	CATG	7 cut(s)	164, 454, 461, 476, 627, 736, 1026
HincII	GTYRAC	2 cut(s)	247, 924
HindII	GTYRAC	2 cut(s)	247, 924
HindIII	AAGCTT	1 cut(s)	864
HinfI	GANTC	2 cut(s)	45, 248
HpaI	GTTAAC	1 cut(s)	924
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	4 cut(s)	247, 592, 924, 1205
Hpy188I	TCNGA	4 cut(s)	522, 1015, 1066, 1214
Hpy188III	TCNNGA	3 cut(s)	350, 512, 946
Hpy8I	GTNNAC	4 cut(s)	247, 592, 924, 1205
HpyAV	CCTTC	4 cut(s)	204, 292, 298, 969
HpyCH4III	ACNGT	2 cut(s)	40, 653
HpyCH4IV	ACGT	1 cut(s)	1138
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 146, 371, 863, 977
HpyF3I	CTNAG	3 cut(s)	348, 375, 839
HpySE526I	ACGT	1 cut(s)	1138
Hsp92II	CATG	7 cut(s)	164, 454, 461, 476, 627, 736, 1026
KspAI	GTTAAC	1 cut(s)	924
Kzo9I	GATC	4 cut(s)	566, 613, 747, 1182
LguI	GCTCTTC	3 cut(s)	24, 147, 426
LmnI	GCTCC	3 cut(s)	479, 990, 1074
Lsp1109I	GCAGC	5 cut(s)	4, 211, 639, 724, 958
LweI	GCATC	3 cut(s)	176, 250, 272
MaeI	CTAG	2 cut(s)	179, 620
MaeII	ACGT	1 cut(s)	1138
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	4 cut(s)	568, 615, 749, 1184
MboI	GATC	4 cut(s)	566, 613, 747, 1182
MfeI	CAATTG	1 cut(s)	1103
MflI	RGATCY	2 cut(s)	566, 613
MhlI	GDGCHC	4 cut(s)	58, 142, 987, 1071
MluCI	AATT	8 cut(s)	150, 235, 380, 694, 741, 793, 907, 1103
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	845
Mph1103I	ATGCAT	1 cut(s)	265
MroXI	GAANNNNTTC	1 cut(s)	336
MseI	TTAA	6 cut(s)	114, 222, 504, 609, 923, 1005
MspCI	CTTAAG	1 cut(s)	221
MunI	CAATTG	1 cut(s)	1103
Mva1269I	GAATGC	1 cut(s)	496
MwoI	GCNNNNNNNGC	5 cut(s)	80, 146, 371, 863, 977
NcoI	CCATGG	1 cut(s)	1022
NdeII	GATC	4 cut(s)	566, 613, 747, 1182
NlaIII	CATG	7 cut(s)	164, 454, 461, 476, 627, 736, 1026
NlaIV	GGNNCC	3 cut(s)	568, 879, 1028
NsiI	ATGCAT	1 cut(s)	265
NspI	RCATGY	3 cut(s)	454, 627, 736
NspV	TTCGAA	1 cut(s)	43
PaeI	GCATGC	2 cut(s)	627, 736
PceI	AGGCCT	1 cut(s)	526
PciSI	GCTCTTC	3 cut(s)	24, 147, 426
PcsI	WCGNNNNNNNCGW	1 cut(s)	49
PctI	GAATGC	1 cut(s)	496
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	45
PkrI	GCNGC	6 cut(s)	19, 201, 629, 714, 859, 973
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
Ppu21I	YACGTR	1 cut(s)	1139
PsiI	TTATAA	1 cut(s)	873
Psp124BI	GAGCTC	2 cut(s)	142, 1071
PspN4I	GGNNCC	3 cut(s)	568, 879, 1028
PspPI	GGNCC	2 cut(s)	88, 287
PsuI	RGATCY	2 cut(s)	566, 613
RsaI	GTAC	1 cut(s)	789
RsaNI	GTAC	1 cut(s)	788
SacI	GAGCTC	2 cut(s)	142, 1071
SapI	GCTCTTC	3 cut(s)	24, 147, 426
SaqAI	TTAA	6 cut(s)	114, 222, 504, 609, 923, 1005
SatI	GCNGC	6 cut(s)	18, 200, 628, 713, 858, 972
Sau3AI	GATC	4 cut(s)	566, 613, 747, 1182
Sau96I	GGNCC	2 cut(s)	88, 287
ScaI	AGTACT	1 cut(s)	789
SchI	GAGTC	1 cut(s)	242
SduI	GDGCHC	4 cut(s)	58, 142, 987, 1071
SfaNI	GCATC	3 cut(s)	176, 250, 272
SfuI	TTCGAA	1 cut(s)	43
SmlI	CTYRAG	2 cut(s)	221, 463
SmoI	CTYRAG	2 cut(s)	221, 463
SphI	GCATGC	2 cut(s)	627, 736
Sse9I	AATT	8 cut(s)	150, 235, 380, 694, 741, 793, 907, 1103
SseBI	AGGCCT	1 cut(s)	526
SsiI	CCGC	1 cut(s)	857
SspMI	CTAG	2 cut(s)	179, 620
SstI	GAGCTC	2 cut(s)	142, 1071
StuI	AGGCCT	1 cut(s)	526
StyI	CCWWGG	2 cut(s)	124, 1022
TaaI	ACNGT	2 cut(s)	40, 653
TaiI	ACGT	1 cut(s)	1141
TaqI	TCGA	3 cut(s)	43, 251, 750
TasI	AATT	8 cut(s)	150, 235, 380, 694, 741, 793, 907, 1103
TatI	WGTACW	1 cut(s)	787
TauI	GCSGC	1 cut(s)	860
TfiI	GAWTC	1 cut(s)	45
Tru1I	TTAA	6 cut(s)	114, 222, 504, 609, 923, 1005
Tru9I	TTAA	6 cut(s)	114, 222, 504, 609, 923, 1005
TscAI	CASTG	1 cut(s)	222
TseI	GCWGC	5 cut(s)	17, 199, 627, 712, 971
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	952
TspRI	CASTG	1 cut(s)	222
Vha464I	CTTAAG	1 cut(s)	221
XapI	RAATTY	3 cut(s)	235, 741, 793
XceI	RCATGY	3 cut(s)	454, 627, 736
XcmI	CCANNNNNNNNNTGG	1 cut(s)	394
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	2 cut(s)	179, 620
ZrmI	AGTACT	1 cut(s)	789
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.