Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004628

Physical Location & Seq

Genomic Coordinates Reverse (-)

68584901 .. 68589933

Gene Structure 5033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG533100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGAAGAATAAGGAAAATACAAGGCATGCTGCCAGAGTTGAAGAGCCTACTGTTCGAATCACACGAGCACGGGCTAAAGCCTTTGCCACATCAGCAGCAGAGGGCCTCTGCCTTGCCTCCTCCTCAAAATCTCTTCTTAAACAAGGCCAAGGCCAAGGCCAGAAGCGAGCTCTTCCAGCAAATTCCAAACACGGGGGGGCATCAGCTTCTCTAGTTTCCACCATCGGCTTGCAGCACAAAAGAAGGGCAGTGCTTAAAGATGTAACGAATTCAAATGTCGACTGGACTGATGATGCATCTCAACTTCAGCCTGGCAAGCAGGCGAGAAGAGGGCCTGCAAAGAAGGTGAAGGTAGCTTCAAATCCAAGTGTTGCTGAACATTTTCCAATGGCTCAGGATGACATAAAAACAAAGTTAGCTGAGGAATTATCCAAAATAAGGGTGGCTGAACCACCAGAAAAGTTGCAAGTGAAAGAAGAGCCATTACCCCAGAGCATGTGTCATGCCTTGAGACAACATGGAGGAGCAGACCTAATACAGCATTCCATTAAATCTGCTCAACTTCAGAGGCCTCAAAAGAAAGAAGAATATATGGTCTGCGAGAGATTGGGATCCTCAAATGACTTGGACATCGTGGACATTGACGCAAACTTAAAAGATCCTCTAGCATGCAGCTTGTATGCCCCTGATATATACAGTAATATACGGCTTACAGAGATAGAGCGAAGACCATCAACTAATTATATGGAAACCTTGCAGCAAGATATCACTCCAAGCATGCGAGGAATTTTGATTGATTGGCTTGTGGAGGTTTCTGAAGAATATAAGCTGGTTCCTGATACACTTTACCTCACTGTGAATCTCATTGATCGCTTTCTCTCACAGAACTTTGTTGAAAAGCAAAGGCTCCAGCTGCTTGGAGTCACTTGCATGTTAATTGCCTCGAAGTATGAAGAAATTGTTGCACCACGAGTGGAAGAATTTTGTCTCATCACGGACAATACTTACTCAAGAGAAGAGGTATTAGAAATGGAGAGTGAAGTACTAAATTTCTTGCACTTCCAGTTATCTGTTCCAACCACGAAAACATTTCTTAGGAGGTTTGTTCAAGCGGCACAAGCTTCTTATAAGGTTCCTTGTGTTGAACTGGAGTTCTTGGCAAATTATTTAGCAGAGTTAACTATTGTTGAATATGGCTTCTTGAAGTTCCTACCTTCCGTCATCGCTGCCTCTGCTGTGTTCCTTGCCAGATGGACACTTAATCAGTCAGACCATCCATGGAACCCGACTTTAGAACACTATACCTCTTACAAAACATCAGAGCTCCACACTTCAGTTATTGCACTTGAAGATTTGCAATTGAACACCAAAGGCTGTTGCCTAAATGCTATACGTGAGAAGTATAGACACCAGAAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008283 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:2000026 GO:2000038 GO:2000123

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

473

Amino Acids

53.34

Weight (kDa)

7.59

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	230 - 357	3.4e-48	Cyclin, N-terminal domain
Cyclin_C	PF02984	359 - 472	4.6e-33	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15570 AT5G11300 AT5G11300 AT5G25380 AT5G25380 AT5G25380 AT5G25380
fragaria_vesca	FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100
malus_domestica	MD08G1137300.v1.1 MD15G1115900.v1.1
prunus_persica	Prupe.1G467200_v2.0.a1
pyrus_communis	pycom08g11590 pycom15g10450
rosa_chinensis	RchiOBHm_Chr6g0312821
rosa_laevigata	RLG00000010295
rosa_multiflora	Rmu_co8351801.1_g000001 Rmu_sc0008049.1_g000007
rosa_roxburghii	Rroxscaffold_7G00156460
rosa_rugosa	Rorug06G0399900 Rorug06G0399900 Rorug06G0399900
rosa_samantha	Rh6AG517000 Rh6BG528400 Rh6CG533100 Rh6DG519600
rosa_wichuraiana	Rw6G044910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1128
AccI	GTMKAC	1 cut(s)	279
AciI	CCGC	1 cut(s)	1112
AclWI	GGATC	3 cut(s)	606, 619, 653
AcsI	RAATTY	5 cut(s)	181, 268, 786, 980, 1048
AcuI	CTGAAG	4 cut(s)	290, 548, 837, 1317
AfaI	GTAC	1 cut(s)	1044
AfiI	CCNNNNNNNGG	2 cut(s)	192, 438
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	9 cut(s)	170, 206, 356, 419, 675, 829, 913, 1121, 1324
AluI	AGCT	9 cut(s)	170, 206, 356, 419, 675, 829, 913, 1121, 1324
Alw21I	GWGCWC	3 cut(s)	70, 172, 1326
Alw26I	GTCTC	2 cut(s)	505, 992
AlwI	GGATC	3 cut(s)	606, 619, 653
AoxI	GGCC	6 cut(s)	103, 145, 151, 157, 332, 569
ApeKI	GCWGC	7 cut(s)	29, 95, 232, 672, 757, 913, 1226
ApoI	RAATTY	5 cut(s)	181, 268, 786, 980, 1048
Asp700I	GAANNNNTTC	1 cut(s)	381
AspS9I	GGNCC	2 cut(s)	103, 332
AsuHPI	GGTGA	1 cut(s)	358
AsuII	TTCGAA	1 cut(s)	55
BamHI	GGATCC	1 cut(s)	611
BanII	GRGCYC	2 cut(s)	172, 1326
BarI	GAAGNNNNNNTAC	2 cut(s)	468, 500
BauI	CACGAG	2 cut(s)	63, 969
BbsI	GAAGAC	1 cut(s)	733
Bbv12I	GWGCWC	3 cut(s)	70, 172, 1326
BbvCI	CCTCAGC	1 cut(s)	420
BbvI	GCAGC	7 cut(s)	16, 107, 244, 684, 769, 900, 1213
BccI	CCATC	4 cut(s)	230, 739, 1245, 1281
BceAI	ACGGC	1 cut(s)	722
BciT130I	CCWGG	1 cut(s)	312
BcoDI	GTCTC	2 cut(s)	505, 992
BfaI	CTAG	2 cut(s)	212, 665
BisI	GCNGC	8 cut(s)	30, 96, 233, 673, 758, 914, 1113, 1227
BlsI	GCNGC	8 cut(s)	31, 97, 234, 674, 759, 915, 1114, 1228
BmcAI	AGTACT	1 cut(s)	1044
Bme1390I	CCNGG	1 cut(s)	312
BmgT120I	GGNCC	2 cut(s)	103, 332
BmiI	GGNNCC	5 cut(s)	613, 834, 908, 1134, 1283
BmrFI	CCNGG	1 cut(s)	312
BmsI	GCATC	3 cut(s)	209, 283, 305
BpiI	GAAGAC	1 cut(s)	733
BpmI	CTGGAG	2 cut(s)	893, 1169
Bpu10I	CCTNAGC	2 cut(s)	393, 420
Bpu14I	TTCGAA	1 cut(s)	55
BpuEI	CTTGAG	2 cut(s)	529, 994
BsaAI	YACGTR	1 cut(s)	1394
BsaBI	GATNNNNATC	1 cut(s)	610
BsaJI	CCNNGG	3 cut(s)	148, 154, 1277
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 438
Bse1I	ACTGG	3 cut(s)	287, 1063, 1152
Bse8I	GATNNNNATC	1 cut(s)	610
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	3 cut(s)	148, 154, 1277
BseGI	GGATG	2 cut(s)	403, 1273
BseJI	GATNNNNATC	1 cut(s)	610
BseLI	CCNNNNNNNGG	2 cut(s)	192, 438
BseMII	CTCAG	2 cut(s)	407, 411
BseNI	ACTGG	3 cut(s)	287, 1063, 1152
BseRI	GAGGAG	3 cut(s)	109, 112, 537
BseXI	GCAGC	7 cut(s)	16, 107, 244, 684, 769, 900, 1213
BshFI	GGCC	6 cut(s)	105, 147, 153, 159, 334, 571
BsiHKAI	GWGCWC	3 cut(s)	70, 172, 1326
BslI	CCNNNNNNNGG	2 cut(s)	192, 438
BsmAI	GTCTC	2 cut(s)	505, 992
BsmI	GAATGC	1 cut(s)	541
BsnI	GGCC	6 cut(s)	105, 147, 153, 159, 334, 571
Bsp119I	TTCGAA	1 cut(s)	55
Bsp1286I	GDGCHC	3 cut(s)	70, 172, 1326
Bsp143I	GATC	3 cut(s)	611, 658, 868
Bsp19I	CCATGG	1 cut(s)	1277
BspACI	CCGC	1 cut(s)	1112
BspANI	GGCC	6 cut(s)	105, 147, 153, 159, 334, 571
BspCNI	CTCAG	2 cut(s)	406, 412
BspLI	GGNNCC	5 cut(s)	613, 834, 908, 1134, 1283
BspPI	GGATC	3 cut(s)	606, 619, 653
BspQI	GCTCTTC	3 cut(s)	36, 177, 471
BspT104I	TTCGAA	1 cut(s)	55
BsrI	ACTGG	3 cut(s)	287, 1063, 1152
BssECI	CCNNGG	3 cut(s)	148, 154, 1277
BssMI	GATC	3 cut(s)	611, 658, 868
BssSI	CACGAG	2 cut(s)	63, 969
BssT1I	CCWWGG	3 cut(s)	148, 154, 1277
Bst2BI	CACGAG	2 cut(s)	63, 969
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	3 cut(s)	52, 698, 856
Bst6I	CTCTTC	6 cut(s)	36, 138, 177, 322, 471, 1011
BstBAI	YACGTR	1 cut(s)	1394
BstBI	TTCGAA	1 cut(s)	55
BstC8I	GCNNGC	8 cut(s)	27, 168, 230, 317, 321, 336, 670, 779
BstDEI	CTNAG	3 cut(s)	393, 420, 1094
BstDSI	CCRYGG	1 cut(s)	1277
BstF5I	GGATG	2 cut(s)	403, 1273
BstKTI	GATC	3 cut(s)	614, 661, 871
BstMAI	GTCTC	2 cut(s)	505, 992
BstMBI	GATC	3 cut(s)	611, 658, 868
BstMWI	GCNNNNNNNGC	6 cut(s)	92, 176, 316, 913, 1118, 1232
BstNI	CCWGG	1 cut(s)	312
BstNSI	RCATGY	5 cut(s)	29, 499, 672, 781, 934
BstSCI	CCNGG	1 cut(s)	310
BstV1I	GCAGC	7 cut(s)	16, 107, 244, 684, 769, 900, 1213
BstV2I	GAAGAC	1 cut(s)	733
BstX2I	RGATCY	2 cut(s)	611, 658
BstXI	CCANNNNNNTGG	1 cut(s)	917
BstYI	RGATCY	2 cut(s)	611, 658
BsuRI	GGCC	6 cut(s)	105, 147, 153, 159, 334, 571
BtgI	CCRYGG	1 cut(s)	1277
BtgZI	GCGATG	1 cut(s)	1207
BtsCI	GGATG	2 cut(s)	403, 1273
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	255, 852
Cac8I	GCNNGC	8 cut(s)	27, 168, 230, 317, 321, 336, 670, 779
Cfr13I	GGNCC	2 cut(s)	103, 332
CseI	GACGC	1 cut(s)	653
Csp6I	GTAC	1 cut(s)	1043
CviAII	CATG	8 cut(s)	26, 496, 503, 518, 669, 778, 931, 1278
CviQI	GTAC	1 cut(s)	1043
DdeI	CTNAG	3 cut(s)	393, 420, 1094
DpnI	GATC	3 cut(s)	613, 660, 870
DpnII	GATC	3 cut(s)	611, 658, 868
Eam1104I	CTCTTC	6 cut(s)	36, 138, 177, 322, 471, 1011
EarI	CTCTTC	6 cut(s)	36, 138, 177, 322, 471, 1011
Ecl136II	GAGCTC	2 cut(s)	170, 1324
Eco130I	CCWWGG	3 cut(s)	148, 154, 1277
Eco147I	AGGCCT	1 cut(s)	571
Eco24I	GRGCYC	2 cut(s)	172, 1326
Eco32I	GATATC	1 cut(s)	766
Eco53kI	GAGCTC	2 cut(s)	170, 1324
Eco57I	CTGAAG	4 cut(s)	290, 548, 837, 1317
EcoICRI	GAGCTC	2 cut(s)	170, 1324
EcoO109I	RGGNCCY	2 cut(s)	103, 332
EcoRI	GAATTC	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	310
EcoRV	GATATC	1 cut(s)	766
EcoT14I	CCWWGG	3 cut(s)	148, 154, 1277
EcoT22I	ATGCAT	1 cut(s)	298
EcoT38I	GRGCYC	2 cut(s)	172, 1326
ErhI	CCWWGG	3 cut(s)	148, 154, 1277
FaeI	CATG	8 cut(s)	29, 499, 506, 521, 672, 781, 934, 1281
FatI	CATG	8 cut(s)	25, 495, 502, 517, 668, 777, 930, 1277
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	8 cut(s)	30, 96, 233, 673, 758, 914, 1113, 1227
FokI	GGATG	2 cut(s)	410, 1260
FriOI	GRGCYC	2 cut(s)	172, 1326
Fsp4HI	GCNGC	8 cut(s)	30, 96, 233, 673, 758, 914, 1113, 1227
FspBI	CTAG	2 cut(s)	212, 665
GluI	GCNGC	8 cut(s)	30, 96, 233, 673, 758, 914, 1113, 1227
GsuI	CTGGAG	2 cut(s)	893, 1169
HaeIII	GGCC	6 cut(s)	105, 147, 153, 159, 334, 571
HgaI	GACGC	1 cut(s)	653
Hin1II	CATG	8 cut(s)	29, 499, 506, 521, 672, 781, 934, 1281
HincII	GTYRAC	2 cut(s)	280, 1179
HindII	GTYRAC	2 cut(s)	280, 1179
HindIII	AAGCTT	1 cut(s)	1119
HinfI	GANTC	3 cut(s)	57, 859, 921
HpaI	GTTAAC	1 cut(s)	1179
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	3 cut(s)	280, 637, 1179
Hpy188I	TCNGA	4 cut(s)	567, 817, 1270, 1321
Hpy188III	TCNNGA	4 cut(s)	395, 836, 1011, 1201
Hpy8I	GTNNAC	3 cut(s)	280, 637, 1179
HpyAV	CCTTC	5 cut(s)	237, 337, 343, 1224, 1408
HpyCH4III	ACNGT	3 cut(s)	52, 698, 856
HpyCH4IV	ACGT	1 cut(s)	1393
HpyF10VI	GCNNNNNNNGC	6 cut(s)	92, 176, 316, 913, 1118, 1232
HpyF3I	CTNAG	3 cut(s)	393, 420, 1094
HpySE526I	ACGT	1 cut(s)	1393
Hsp92II	CATG	8 cut(s)	29, 499, 506, 521, 672, 781, 934, 1281
KspAI	GTTAAC	1 cut(s)	1179
Kzo9I	GATC	3 cut(s)	611, 658, 868
LguI	GCTCTTC	3 cut(s)	36, 177, 471
LmnI	GCTCC	3 cut(s)	524, 912, 1329
Lsp1109I	GCAGC	7 cut(s)	16, 107, 244, 684, 769, 900, 1213
LweI	GCATC	3 cut(s)	209, 283, 305
MaeI	CTAG	2 cut(s)	212, 665
MaeII	ACGT	1 cut(s)	1393
MaeIII	GTNAC	2 cut(s)	262, 922
MalI	GATC	3 cut(s)	613, 660, 870
MboI	GATC	3 cut(s)	611, 658, 868
MfeI	CAATTG	1 cut(s)	1358
MflI	RGATCY	2 cut(s)	611, 658
MhlI	GDGCHC	3 cut(s)	70, 172, 1326
MlyI	GAGTC	1 cut(s)	930
MmeI	TCCRAC	1 cut(s)	1100
Mph1103I	ATGCAT	1 cut(s)	298
MroXI	GAANNNNTTC	1 cut(s)	381
MseI	TTAA	7 cut(s)	138, 255, 549, 653, 935, 1178, 1260
MslI	CAYNNNNRTG	1 cut(s)	929
MspA1I	CMGCKG	1 cut(s)	913
MspR9I	CCNGG	1 cut(s)	312
MunI	CAATTG	1 cut(s)	1358
Mva1269I	GAATGC	1 cut(s)	541
MvaI	CCWGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	6 cut(s)	92, 176, 316, 913, 1118, 1232
NcoI	CCATGG	1 cut(s)	1277
NdeII	GATC	3 cut(s)	611, 658, 868
NlaIII	CATG	8 cut(s)	29, 499, 506, 521, 672, 781, 934, 1281
NlaIV	GGNNCC	5 cut(s)	613, 834, 908, 1134, 1283
NmuCI	GTSAC	1 cut(s)	922
NsiI	ATGCAT	1 cut(s)	298
NspI	RCATGY	5 cut(s)	29, 499, 672, 781, 934
NspV	TTCGAA	1 cut(s)	55
PaeI	GCATGC	3 cut(s)	29, 672, 781
PceI	AGGCCT	1 cut(s)	571
PciSI	GCTCTTC	3 cut(s)	36, 177, 471
PcsI	WCGNNNNNNNCGW	1 cut(s)	61
PctI	GAATGC	1 cut(s)	541
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	2 cut(s)	57, 859
PkrI	GCNGC	8 cut(s)	31, 97, 234, 674, 759, 915, 1114, 1228
PleI	GAGTC	1 cut(s)	929
PpsI	GAGTC	1 cut(s)	929
Ppu21I	YACGTR	1 cut(s)	1394
PsiI	TTATAA	1 cut(s)	1128
Psp124BI	GAGCTC	2 cut(s)	172, 1326
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	5 cut(s)	613, 834, 908, 1134, 1283
PspPI	GGNCC	2 cut(s)	103, 332
PsuI	RGATCY	2 cut(s)	611, 658
PvuII	CAGCTG	1 cut(s)	913
RsaI	GTAC	1 cut(s)	1044
RsaNI	GTAC	1 cut(s)	1043
RseI	CAYNNNNRTG	1 cut(s)	929
SacI	GAGCTC	2 cut(s)	172, 1326
SalI	GTCGAC	1 cut(s)	278
SapI	GCTCTTC	3 cut(s)	36, 177, 471
SaqAI	TTAA	7 cut(s)	138, 255, 549, 653, 935, 1178, 1260
SatI	GCNGC	8 cut(s)	30, 96, 233, 673, 758, 914, 1113, 1227
Sau3AI	GATC	3 cut(s)	611, 658, 868
Sau96I	GGNCC	2 cut(s)	103, 332
ScaI	AGTACT	1 cut(s)	1044
SchI	GAGTC	1 cut(s)	930
ScrFI	CCNGG	1 cut(s)	312
SduI	GDGCHC	3 cut(s)	70, 172, 1326
SfaNI	GCATC	3 cut(s)	209, 283, 305
SfuI	TTCGAA	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	929
SmlI	CTYRAG	2 cut(s)	508, 1009
SmoI	CTYRAG	2 cut(s)	508, 1009
SphI	GCATGC	3 cut(s)	29, 672, 781
SseBI	AGGCCT	1 cut(s)	571
SsiI	CCGC	1 cut(s)	1112
SspMI	CTAG	2 cut(s)	212, 665
SstI	GAGCTC	2 cut(s)	172, 1326
StuI	AGGCCT	1 cut(s)	571
StyD4I	CCNGG	1 cut(s)	310
StyI	CCWWGG	3 cut(s)	148, 154, 1277
TaaI	ACNGT	3 cut(s)	52, 698, 856
TaiI	ACGT	1 cut(s)	1396
TaqI	TCGA	3 cut(s)	55, 279, 944
TatI	WGTACW	1 cut(s)	1042
TauI	GCSGC	1 cut(s)	1115
TfiI	GAWTC	2 cut(s)	57, 859
Tru1I	TTAA	7 cut(s)	138, 255, 549, 653, 935, 1178, 1260
Tru9I	TTAA	7 cut(s)	138, 255, 549, 653, 935, 1178, 1260
TscAI	CASTG	2 cut(s)	255, 859
TseFI	GTSAC	1 cut(s)	922
TseI	GCWGC	7 cut(s)	29, 95, 232, 672, 757, 913, 1226
Tsp45I	GTSAC	1 cut(s)	922
TspDTI	ATGAA	2 cut(s)	17, 966
TspGWI	ACGGA	2 cut(s)	1010, 1207
TspRI	CASTG	2 cut(s)	255, 859
XapI	RAATTY	5 cut(s)	181, 268, 786, 980, 1048
XceI	RCATGY	5 cut(s)	29, 499, 672, 781, 934
XcmI	CCANNNNNNNNNTGG	1 cut(s)	439
XmiI	GTMKAC	1 cut(s)	279
XmnI	GAANNNNTTC	1 cut(s)	381
XspI	CTAG	2 cut(s)	212, 665
ZrmI	AGTACT	1 cut(s)	1044
Zsp2I	ATGCAT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.