Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004628

Physical Location & Seq

Genomic Coordinates Forward (+)

299426 .. 304285

Gene Structure 4860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00156460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGAATAAGGAAAATACAAATGCTGCCAGAGTTGAAGAGCCTACTGTTCGAATCACACGAGCACGGGCTAAAGCCTTTCCCACATCAGCAGAGGGCCTTGCCTCCTCAAAATCTCTTCTTAAACAAGGCCAGAAGCGACCTCTTCGACCAAATTCCAAACATGGGGAATCAGCTTCTCTAGTTTCCACCATCGGCTTGCAGCACAAAAGAAGGGCAGTGCTTAAAGATGTAACGAATTCAAATGTCGACTGGACTGATGCATCTCAACTTCAGCCTGGCAAGCAGGCGAGAAGAGGGCCTGCAAAGAAGGTGAAGGTAGCCTCAAATCCAAGTGTTGCTGAAGATTTTCCAATGCCTCAGGATGACATAAAAGCAAGGTTGGCTGAGGAATTATCCAAAATAAGGGTGGCTGAACCACCAGAAAAGTTGCAAGTGAAAGAAGAGCTATTACCCCAGAGCATGTGTCATGCCTTGAGACAACATGGAGGAGCAGACCTAATACAGCATTCCATTAAATCTGCTGAACTTCAGAGGCCTCAAAAGAAAGAAGAATATGTGGTCTGCGAGAGATTGGGATCCTCAAATGACTTGGACATGGTGGACATTGACGCAAACTTAAAAGATCCTCTAGCATGCAGCTTGTATGCCCCTGATATATACAGTAGTATACGGCTTACAGAGATAGAGCGAAGACCATCAACTAATTATATGGAAAACTTGCAGCAAGATATCACTCCAAGCATGCGAGGAATTTTGATTGATTGGCTTGTGGAGGTTTCTGAAGAATATAAGCTGGTTCCTGATACACTTTACCTCACTGTGAATCTCATTGATCGCTTTCTCTCACGGAACTTTGTTGAAAAGCAAAGGCTCCAGCTGCTTGGAGTCACTTGCATGTTAATTGCCTCGAAGTATGAAGAAATTGTTGCACCACGAGTGGAAGAATTTTGTCTCATCACGGACAATACTTACTCAAGAGAAGAGGTATTAGAAATGGAGAGTGAAGTACTAAATTTCTTGCACTTCCAGTTATCTGTTCCAACTACGAAAACATTTCTTAGGAGGTTTGTTCAAGCGGCACAAGCTTCTTACAAGGTTCCTTGTGTTGAACTGGAGTTCTTGGCAAATTATTTAGCAGAGTTAACTATTGTTGAATATGGCTTCTTGAAGTTCCTACCTTCCGTCATCGCTGCCTCTGCTGTGTTCCTTGCCAGATGGACACTTAATCAGTCAGACCATCCATGGAACCCGACTTTAGAACACTATACCTCTTACAAAACATCAGAGCTCCACACTTCAGTTATTGCACTTGAAGATTTGCAATTGAACACCAAAGGCTGTTGCCTAAATGCTATACGTGAGAAGTATAGACACCAGAAGTTCAAATCCGTGGCTACTTTGATCTCTGCACAAAAGGTTGGTTCACTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008283 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:2000026 GO:2000038 GO:2000123

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

477

Amino Acids

54.01

Weight (kDa)

7.59

Isoelectric Point (pI)

48.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	218 - 345	5.1e-48	Cyclin, N-terminal domain
Cyclin_C	PF02984	347 - 467	7.5e-36	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15570 AT5G11300 AT5G11300 AT5G25380 AT5G25380 AT5G25380 AT5G25380
fragaria_vesca	FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100
malus_domestica	MD08G1137300.v1.1 MD15G1115900.v1.1
prunus_persica	Prupe.1G467200_v2.0.a1
pyrus_communis	pycom08g11590 pycom15g10450
rosa_chinensis	RchiOBHm_Chr6g0312821
rosa_laevigata	RLG00000010295
rosa_multiflora	Rmu_co8351801.1_g000001 Rmu_sc0008049.1_g000007
rosa_roxburghii	Rroxscaffold_7G00156460
rosa_rugosa	Rorug06G0399900 Rorug06G0399900 Rorug06G0399900
rosa_samantha	Rh6AG517000 Rh6BG528400 Rh6CG533100 Rh6DG519600
rosa_wichuraiana	Rw6G044910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	246, 667
AciI	CCGC	1 cut(s)	1076
AclWI	GGATC	3 cut(s)	570, 583, 617
AcsI	RAATTY	5 cut(s)	151, 235, 750, 944, 1012
AcuI	CTGAAG	5 cut(s)	254, 360, 512, 801, 1281
AfaI	GTAC	1 cut(s)	1008
AfiI	CCNNNNNNNGG	2 cut(s)	162, 402
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	7 cut(s)	173, 445, 639, 793, 877, 1085, 1288
AluI	AGCT	7 cut(s)	173, 445, 639, 793, 877, 1085, 1288
Alw21I	GWGCWC	2 cut(s)	64, 1290
Alw26I	GTCTC	2 cut(s)	469, 956
AlwI	GGATC	3 cut(s)	570, 583, 617
AoxI	GGCC	4 cut(s)	94, 127, 296, 533
ApeKI	GCWGC	6 cut(s)	23, 199, 636, 721, 877, 1190
ApoI	RAATTY	5 cut(s)	151, 235, 750, 944, 1012
Asp700I	GAANNNNTTC	1 cut(s)	345
AspS9I	GGNCC	2 cut(s)	94, 296
AsuHPI	GGTGA	1 cut(s)	322
AsuII	TTCGAA	1 cut(s)	49
AxyI	CCTNAGG	1 cut(s)	357
BamHI	GGATCC	1 cut(s)	575
BanII	GRGCYC	1 cut(s)	1290
BarI	GAAGNNNNNNTAC	2 cut(s)	432, 464
BauI	CACGAG	2 cut(s)	57, 933
BbsI	GAAGAC	1 cut(s)	697
Bbv12I	GWGCWC	2 cut(s)	64, 1290
BbvCI	CCTCAGC	1 cut(s)	384
BbvI	GCAGC	6 cut(s)	10, 211, 648, 733, 864, 1177
BccI	CCATC	4 cut(s)	197, 703, 1209, 1245
BceAI	ACGGC	1 cut(s)	686
BciT130I	CCWGG	1 cut(s)	276
BcoDI	GTCTC	2 cut(s)	469, 956
BfaI	CTAG	2 cut(s)	179, 629
BisI	GCNGC	7 cut(s)	24, 200, 637, 722, 878, 1077, 1191
BlsI	GCNGC	7 cut(s)	25, 201, 638, 723, 879, 1078, 1192
BmcAI	AGTACT	1 cut(s)	1008
Bme1390I	CCNGG	1 cut(s)	276
BmgT120I	GGNCC	2 cut(s)	94, 296
BmiI	GGNNCC	5 cut(s)	577, 798, 872, 1098, 1247
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	2 cut(s)	247, 269
BpiI	GAAGAC	1 cut(s)	697
BpmI	CTGGAG	2 cut(s)	857, 1133
Bpu10I	CCTNAGC	1 cut(s)	384
Bpu14I	TTCGAA	1 cut(s)	49
BpuEI	CTTGAG	2 cut(s)	493, 958
BsaAI	YACGTR	1 cut(s)	1358
BsaBI	GATNNNNATC	1 cut(s)	574
BsaJI	CCNNGG	2 cut(s)	1241, 1389
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 402
Bse1I	ACTGG	3 cut(s)	254, 1027, 1116
Bse21I	CCTNAGG	1 cut(s)	357
Bse8I	GATNNNNATC	1 cut(s)	574
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	2 cut(s)	1241, 1389
BseGI	GGATG	2 cut(s)	367, 1237
BseJI	GATNNNNATC	1 cut(s)	574
BseLI	CCNNNNNNNGG	2 cut(s)	162, 402
BseMII	CTCAG	2 cut(s)	371, 375
BseNI	ACTGG	3 cut(s)	254, 1027, 1116
BseRI	GAGGAG	2 cut(s)	94, 501
BseXI	GCAGC	6 cut(s)	10, 211, 648, 733, 864, 1177
BsgI	GTGCAG	1 cut(s)	1392
BshFI	GGCC	4 cut(s)	96, 129, 298, 535
BsiHKAI	GWGCWC	2 cut(s)	64, 1290
BslI	CCNNNNNNNGG	2 cut(s)	162, 402
BsmAI	GTCTC	2 cut(s)	469, 956
BsmI	GAATGC	1 cut(s)	505
BsnI	GGCC	4 cut(s)	96, 129, 298, 535
Bsp119I	TTCGAA	1 cut(s)	49
Bsp1286I	GDGCHC	2 cut(s)	64, 1290
Bsp143I	GATC	4 cut(s)	575, 622, 832, 1401
Bsp19I	CCATGG	1 cut(s)	1241
BspACI	CCGC	1 cut(s)	1076
BspANI	GGCC	4 cut(s)	96, 129, 298, 535
BspCNI	CTCAG	2 cut(s)	370, 376
BspLI	GGNNCC	5 cut(s)	577, 798, 872, 1098, 1247
BspPI	GGATC	3 cut(s)	570, 583, 617
BspQI	GCTCTTC	2 cut(s)	30, 435
BspT104I	TTCGAA	1 cut(s)	49
BsrI	ACTGG	3 cut(s)	254, 1027, 1116
BssECI	CCNNGG	2 cut(s)	1241, 1389
BssMI	GATC	4 cut(s)	575, 622, 832, 1401
BssNAI	GTATAC	1 cut(s)	668
BssSI	CACGAG	2 cut(s)	57, 933
BssT1I	CCWWGG	1 cut(s)	1241
Bst1107I	GTATAC	1 cut(s)	668
Bst2BI	CACGAG	2 cut(s)	57, 933
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	3 cut(s)	46, 662, 820
Bst6I	CTCTTC	6 cut(s)	30, 120, 147, 286, 435, 975
BstBAI	YACGTR	1 cut(s)	1358
BstBI	TTCGAA	1 cut(s)	49
BstC8I	GCNNGC	6 cut(s)	197, 281, 285, 300, 634, 743
BstDEI	CTNAG	3 cut(s)	357, 384, 1058
BstDSI	CCRYGG	2 cut(s)	1241, 1389
BstF5I	GGATG	2 cut(s)	367, 1237
BstKTI	GATC	4 cut(s)	578, 625, 835, 1404
BstMAI	GTCTC	2 cut(s)	469, 956
BstMBI	GATC	4 cut(s)	575, 622, 832, 1401
BstMWI	GCNNNNNNNGC	5 cut(s)	280, 380, 877, 1082, 1196
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	4 cut(s)	463, 636, 745, 898
BstSCI	CCNGG	1 cut(s)	274
BstV1I	GCAGC	6 cut(s)	10, 211, 648, 733, 864, 1177
BstV2I	GAAGAC	1 cut(s)	697
BstX2I	RGATCY	2 cut(s)	575, 622
BstXI	CCANNNNNNTGG	1 cut(s)	881
BstYI	RGATCY	2 cut(s)	575, 622
BstZ17I	GTATAC	1 cut(s)	668
Bsu36I	CCTNAGG	1 cut(s)	357
BsuRI	GGCC	4 cut(s)	96, 129, 298, 535
BtgI	CCRYGG	2 cut(s)	1241, 1389
BtgZI	GCGATG	1 cut(s)	1171
BtsCI	GGATG	2 cut(s)	367, 1237
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	2 cut(s)	222, 816
Cac8I	GCNNGC	6 cut(s)	197, 281, 285, 300, 634, 743
Cfr13I	GGNCC	2 cut(s)	94, 296
CseI	GACGC	1 cut(s)	617
Csp6I	GTAC	1 cut(s)	1007
CviAII	CATG	9 cut(s)	161, 460, 467, 482, 595, 633, 742, 895, 1242
CviQI	GTAC	1 cut(s)	1007
DdeI	CTNAG	3 cut(s)	357, 384, 1058
DpnI	GATC	4 cut(s)	577, 624, 834, 1403
DpnII	GATC	4 cut(s)	575, 622, 832, 1401
Eam1104I	CTCTTC	6 cut(s)	30, 120, 147, 286, 435, 975
EarI	CTCTTC	6 cut(s)	30, 120, 147, 286, 435, 975
Ecl136II	GAGCTC	1 cut(s)	1288
Eco130I	CCWWGG	1 cut(s)	1241
Eco147I	AGGCCT	1 cut(s)	535
Eco24I	GRGCYC	1 cut(s)	1290
Eco32I	GATATC	1 cut(s)	730
Eco53kI	GAGCTC	1 cut(s)	1288
Eco57I	CTGAAG	5 cut(s)	254, 360, 512, 801, 1281
Eco81I	CCTNAGG	1 cut(s)	357
EcoICRI	GAGCTC	1 cut(s)	1288
EcoO109I	RGGNCCY	2 cut(s)	94, 296
EcoRI	GAATTC	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	274
EcoRV	GATATC	1 cut(s)	730
EcoT14I	CCWWGG	1 cut(s)	1241
EcoT22I	ATGCAT	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	1290
ErhI	CCWWGG	1 cut(s)	1241
FaeI	CATG	9 cut(s)	164, 463, 470, 485, 598, 636, 745, 898, 1245
FatI	CATG	9 cut(s)	160, 459, 466, 481, 594, 632, 741, 894, 1241
FblI	GTMKAC	2 cut(s)	246, 667
Fnu4HI	GCNGC	7 cut(s)	24, 200, 637, 722, 878, 1077, 1191
FokI	GGATG	2 cut(s)	374, 1224
FriOI	GRGCYC	1 cut(s)	1290
Fsp4HI	GCNGC	7 cut(s)	24, 200, 637, 722, 878, 1077, 1191
FspBI	CTAG	2 cut(s)	179, 629
GluI	GCNGC	7 cut(s)	24, 200, 637, 722, 878, 1077, 1191
GsuI	CTGGAG	2 cut(s)	857, 1133
HaeIII	GGCC	4 cut(s)	96, 129, 298, 535
HgaI	GACGC	1 cut(s)	617
Hin1II	CATG	9 cut(s)	164, 463, 470, 485, 598, 636, 745, 898, 1245
HincII	GTYRAC	2 cut(s)	247, 1143
HindII	GTYRAC	2 cut(s)	247, 1143
HindIII	AAGCTT	1 cut(s)	1083
HinfI	GANTC	4 cut(s)	51, 167, 823, 885
HpaI	GTTAAC	1 cut(s)	1143
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	5 cut(s)	247, 601, 668, 1143, 1424
Hpy188I	TCNGA	5 cut(s)	531, 781, 1234, 1285, 1433
Hpy188III	TCNNGA	4 cut(s)	359, 800, 975, 1165
Hpy8I	GTNNAC	5 cut(s)	247, 601, 668, 1143, 1424
HpyAV	CCTTC	4 cut(s)	204, 301, 307, 1188
HpyCH4III	ACNGT	3 cut(s)	46, 662, 820
HpyCH4IV	ACGT	1 cut(s)	1357
HpyF10VI	GCNNNNNNNGC	5 cut(s)	280, 380, 877, 1082, 1196
HpyF3I	CTNAG	3 cut(s)	357, 384, 1058
HpySE526I	ACGT	1 cut(s)	1357
Hsp92II	CATG	9 cut(s)	164, 463, 470, 485, 598, 636, 745, 898, 1245
KspAI	GTTAAC	1 cut(s)	1143
Kzo9I	GATC	4 cut(s)	575, 622, 832, 1401
LguI	GCTCTTC	2 cut(s)	30, 435
LmnI	GCTCC	3 cut(s)	488, 876, 1293
Lsp1109I	GCAGC	6 cut(s)	10, 211, 648, 733, 864, 1177
LweI	GCATC	2 cut(s)	247, 269
MaeI	CTAG	2 cut(s)	179, 629
MaeII	ACGT	1 cut(s)	1357
MaeIII	GTNAC	2 cut(s)	229, 886
MalI	GATC	4 cut(s)	577, 624, 834, 1403
MboI	GATC	4 cut(s)	575, 622, 832, 1401
MfeI	CAATTG	1 cut(s)	1322
MflI	RGATCY	2 cut(s)	575, 622
MhlI	GDGCHC	2 cut(s)	64, 1290
MlyI	GAGTC	1 cut(s)	894
MmeI	TCCRAC	1 cut(s)	1064
Mph1103I	ATGCAT	1 cut(s)	262
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	7 cut(s)	120, 222, 513, 617, 899, 1142, 1224
MslI	CAYNNNNRTG	1 cut(s)	893
MspA1I	CMGCKG	1 cut(s)	877
MspR9I	CCNGG	1 cut(s)	276
MunI	CAATTG	1 cut(s)	1322
Mva1269I	GAATGC	1 cut(s)	505
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	5 cut(s)	280, 380, 877, 1082, 1196
NcoI	CCATGG	1 cut(s)	1241
NdeII	GATC	4 cut(s)	575, 622, 832, 1401
NlaIII	CATG	9 cut(s)	164, 463, 470, 485, 598, 636, 745, 898, 1245
NlaIV	GGNNCC	5 cut(s)	577, 798, 872, 1098, 1247
NmuCI	GTSAC	1 cut(s)	886
NsiI	ATGCAT	1 cut(s)	262
NspI	RCATGY	4 cut(s)	463, 636, 745, 898
NspV	TTCGAA	1 cut(s)	49
PaeI	GCATGC	2 cut(s)	636, 745
PceI	AGGCCT	1 cut(s)	535
PciSI	GCTCTTC	2 cut(s)	30, 435
PcsI	WCGNNNNNNNCGW	1 cut(s)	55
PctI	GAATGC	1 cut(s)	505
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	3 cut(s)	51, 167, 823
PkrI	GCNGC	7 cut(s)	25, 201, 638, 723, 879, 1078, 1192
PleI	GAGTC	1 cut(s)	893
PpsI	GAGTC	1 cut(s)	893
Ppu21I	YACGTR	1 cut(s)	1358
Psp124BI	GAGCTC	1 cut(s)	1290
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	5 cut(s)	577, 798, 872, 1098, 1247
PspPI	GGNCC	2 cut(s)	94, 296
PsuI	RGATCY	2 cut(s)	575, 622
PvuII	CAGCTG	1 cut(s)	877
RsaI	GTAC	1 cut(s)	1008
RsaNI	GTAC	1 cut(s)	1007
RseI	CAYNNNNRTG	1 cut(s)	893
SacI	GAGCTC	1 cut(s)	1290
SalI	GTCGAC	1 cut(s)	245
SapI	GCTCTTC	2 cut(s)	30, 435
SaqAI	TTAA	7 cut(s)	120, 222, 513, 617, 899, 1142, 1224
SatI	GCNGC	7 cut(s)	24, 200, 637, 722, 878, 1077, 1191
Sau3AI	GATC	4 cut(s)	575, 622, 832, 1401
Sau96I	GGNCC	2 cut(s)	94, 296
ScaI	AGTACT	1 cut(s)	1008
SchI	GAGTC	1 cut(s)	894
ScrFI	CCNGG	1 cut(s)	276
SduI	GDGCHC	2 cut(s)	64, 1290
SfaNI	GCATC	2 cut(s)	247, 269
SfuI	TTCGAA	1 cut(s)	49
SmiMI	CAYNNNNRTG	1 cut(s)	893
SmlI	CTYRAG	2 cut(s)	472, 973
SmoI	CTYRAG	2 cut(s)	472, 973
SphI	GCATGC	2 cut(s)	636, 745
SseBI	AGGCCT	1 cut(s)	535
SsiI	CCGC	1 cut(s)	1076
SspMI	CTAG	2 cut(s)	179, 629
SstI	GAGCTC	1 cut(s)	1290
StuI	AGGCCT	1 cut(s)	535
StyD4I	CCNGG	1 cut(s)	274
StyI	CCWWGG	1 cut(s)	1241
TaaI	ACNGT	3 cut(s)	46, 662, 820
TaiI	ACGT	1 cut(s)	1360
TaqI	TCGA	4 cut(s)	49, 145, 246, 908
TatI	WGTACW	1 cut(s)	1006
TauI	GCSGC	1 cut(s)	1079
TfiI	GAWTC	3 cut(s)	51, 167, 823
Tru1I	TTAA	7 cut(s)	120, 222, 513, 617, 899, 1142, 1224
Tru9I	TTAA	7 cut(s)	120, 222, 513, 617, 899, 1142, 1224
TscAI	CASTG	2 cut(s)	222, 823
TseFI	GTSAC	1 cut(s)	886
TseI	GCWGC	6 cut(s)	23, 199, 636, 721, 877, 1190
Tsp45I	GTSAC	1 cut(s)	886
TspDTI	ATGAA	2 cut(s)	17, 930
TspGWI	ACGGA	4 cut(s)	862, 974, 1171, 1378
TspRI	CASTG	2 cut(s)	222, 823
XapI	RAATTY	5 cut(s)	151, 235, 750, 944, 1012
XceI	RCATGY	4 cut(s)	463, 636, 745, 898
XcmI	CCANNNNNNNNNTGG	1 cut(s)	403
XmiI	GTMKAC	2 cut(s)	246, 667
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	2 cut(s)	179, 629
ZrmI	AGTACT	1 cut(s)	1008
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.