Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004628

Physical Location & Seq

Genomic Coordinates Reverse (-)

13122827 .. 13127663

Gene Structure 4837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1137300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGAATAAGGAAAATGCAAATGCTGCCAAAGTTGAAGACCCTAATGTCCGAATCACAAGAGCACGGTCTAAAGCCTTTGGCGCATCCAGTGAGGAACTCTCCTCCTCGAAACTTTTCATTAAACAAGATCAGAAGCGTGGTCTTCGAGCGATTTCCAAAAGAGCAGCATCAGATGAGAACAAAGCATCTGCAATTGCTAATGTTGGCTTGCAGCATAAAAGAAGGGCAGTGCTTAAGGATGTAGGAAACATCACCTCTGAAAATTCATACGTTAATTGCACTGATGCATCTCAGATTCAGACTAACAAGCAGGCTAGAAGAGGACTTGGAAAGAATGTTAAGGTGGCCTCATCTGTCTCTGAAGCAATTCCAATAGTTCAAGACGACGTAAAAGCAAAGTTAGCTGAGGAATTATCCAAAATAAGGGTGGCAGAACCCTTAGAGCCCACTCTGCCAAAAGAGCCAGTACCCCAGGGTATGAATCATACCTTGGGACAACATAAAGGAGCAGATTTAATGCTTACAATACTGGCTCCCGCCGAATCTGCTGAACTTTGGAACCCTCAAAAGAAAGAAGAATATATGGTCGGGGAGATAGTGGGATCTTCAAATGTCCTGGACATCGTGAATATTGACTCAAACTTAAAGGATCCTCTAGCGTGCAGCTTGTATGCCTCTGATATTTACAGCAATATCTGCCTGACAGAGGTAGCGCGAAGACTTTCAACTGATTATATGGAAAGATTGCAGCGGGATATCACTCCCAGCATGCGAGGAATTTTGATTGATTGGCTTGTGGAGGTTTCTGAAGAATATAAGCTGGTTCCAGATACACTTTACCTCACAGTAAATCTCATTGATCGGTTTCTCTCTCAAAATTATGTTGAAAAGCAAAGGCTCCAGCTGCTTGGAGTCACTTGCATGTTAATTGCCTCGAAGTATGAAGAAATATGTGCACCGCGAGTGGAAGAATTTTGCATCATCACAGACAATACTTACTCAAGAGAGGAGGTATTAAAAATGGAGAGTCAAGTTCTAAATTTCATGCATTTCCAGTTATCTGTTCCCACCATAAAAACATTTCTTAGGAGGTTCGTTCATGCAGCTCAAGCATCTTATAAGGTTCCTTGTGTTGAACTGGAGTTATTGGCAAATTATTTAGCAGAATTGGCTCTTGTTGAATACGGCTTCCTGAAGTTCCTACCTTCCCTCATAGCAGCCTCTGCTGTTTTCCTCGCCAGATGGACGCTCAATCAGTCAGACCATCCATGGAACCCTACTTTAGAGCACTACACCTCGTACAAAACTTCACAGCTCAAAACTACAGTTGTTGCACTGGAAGATTTGCAATTGAACACGACTGGTTGCCTCCTAAATTCAATTCGTGAGAAGTATAAACACCAGAAGTTCAAGTCTGTGGCTACATTGACCTCCAAACAACAGGTGGTTCACTCTTTCAAAGATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008283 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:2000026 GO:2000038 GO:2000123

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

490

Amino Acids

54.99

Weight (kDa)

7.98

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	227 - 354	1.8e-46	Cyclin, N-terminal domain
Cyclin_C	PF02984	356 - 478	1.9e-35	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15570 AT5G11300 AT5G11300 AT5G25380 AT5G25380 AT5G25380 AT5G25380
fragaria_vesca	FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100
malus_domestica	MD08G1137300.v1.1 MD15G1115900.v1.1
prunus_persica	Prupe.1G467200_v2.0.a1
pyrus_communis	pycom08g11590 pycom15g10450
rosa_chinensis	RchiOBHm_Chr6g0312821
rosa_laevigata	RLG00000010295
rosa_multiflora	Rmu_co8351801.1_g000001 Rmu_sc0008049.1_g000007
rosa_roxburghii	Rroxscaffold_7G00156460
rosa_rugosa	Rorug06G0399900 Rorug06G0399900 Rorug06G0399900
rosa_samantha	Rh6AG517000 Rh6BG528400 Rh6CG533100 Rh6DG519600
rosa_wichuraiana	Rw6G044910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1119
AasI	GACNNNNNNGTC	1 cut(s)	44
AccII	CGCG	2 cut(s)	715, 961
AciI	CCGC	3 cut(s)	537, 751, 959
AclWI	GGATC	3 cut(s)	610, 644, 657
AcsI	RAATTY	5 cut(s)	262, 777, 971, 1039, 1375
AcuI	CTGAAG	3 cut(s)	381, 828, 1214
AfaI	GTAC	2 cut(s)	468, 1301
AfiI	CCNNNNNNNGG	2 cut(s)	423, 706
AflII	CTTAAG	1 cut(s)	233
AjnI	CCWGG	2 cut(s)	471, 615
AjuI	GAANNNNNNNTTGG	2 cut(s)	473, 505
AluBI	AGCT	6 cut(s)	404, 666, 820, 904, 1106, 1315
AluI	AGCT	6 cut(s)	404, 666, 820, 904, 1106, 1315
Alw21I	GWGCWC	3 cut(s)	64, 958, 1290
Alw26I	GTCTC	1 cut(s)	361
Alw44I	GTGCAC	1 cut(s)	954
AlwI	GGATC	3 cut(s)	610, 644, 657
AlwNI	CAGNNNCTG	1 cut(s)	1223
AoxI	GGCC	1 cut(s)	345
ApaLI	GTGCAC	1 cut(s)	954
ApeKI	GCWGC	8 cut(s)	23, 164, 211, 663, 748, 904, 1103, 1217
ApoI	RAATTY	5 cut(s)	262, 777, 971, 1039, 1375
Asp700I	GAANNNNTTC	3 cut(s)	113, 366, 721
AspLEI	GCGC	2 cut(s)	83, 715
AsuHPI	GGTGA	1 cut(s)	244
BaeGI	GKGCMC	1 cut(s)	958
BamHI	GGATCC	1 cut(s)	649
BanII	GRGCYC	1 cut(s)	447
BbsI	GAAGAC	3 cut(s)	42, 134, 724
Bbv12I	GWGCWC	3 cut(s)	64, 958, 1290
BbvCI	CCTCAGC	1 cut(s)	405
BbvI	GCAGC	8 cut(s)	10, 176, 223, 675, 760, 891, 1115, 1229
BccI	CCATC	2 cut(s)	1236, 1272
BceAI	ACGGC	1 cut(s)	1201
BciT130I	CCWGG	2 cut(s)	473, 617
BcoDI	GTCTC	1 cut(s)	361
BfaI	CTAG	2 cut(s)	315, 656
BfmI	CTRYAG	1 cut(s)	1323
BfrI	CTTAAG	1 cut(s)	233
BisI	GCNGC	8 cut(s)	24, 165, 212, 664, 749, 905, 1104, 1218
BlsI	GCNGC	8 cut(s)	25, 166, 213, 665, 750, 906, 1105, 1219
Bme1390I	CCNGG	2 cut(s)	473, 617
BmiI	GGNNCC	7 cut(s)	534, 560, 651, 825, 899, 1125, 1274
BmrFI	CCNGG	2 cut(s)	473, 617
BmsI	GCATC	7 cut(s)	92, 176, 194, 274, 296, 987, 1121
BpiI	GAAGAC	3 cut(s)	42, 134, 724
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpmI	CTGGAG	2 cut(s)	884, 1160
Bpu10I	CCTNAGC	1 cut(s)	405
BpuEI	CTTGAG	2 cut(s)	985, 1092
BsaJI	CCNNGG	4 cut(s)	471, 472, 489, 1268
Bsc4I	CCNNNNNNNGG	2 cut(s)	423, 706
Bse1I	ACTGG	7 cut(s)	87, 464, 534, 1054, 1143, 1341, 1366
BseBI	CCWGG	2 cut(s)	473, 617
BseDI	CCNNGG	4 cut(s)	471, 472, 489, 1268
BseGI	GGATG	3 cut(s)	83, 244, 1264
BseLI	CCNNNNNNNGG	2 cut(s)	423, 706
BseMII	CTCAG	2 cut(s)	305, 396
BseNI	ACTGG	7 cut(s)	87, 464, 534, 1054, 1143, 1341, 1366
BseRI	GAGGAG	3 cut(s)	91, 94, 1022
BseSI	GKGCMC	1 cut(s)	958
BseXI	GCAGC	8 cut(s)	10, 176, 223, 675, 760, 891, 1115, 1229
BseYI	CCCAGC	1 cut(s)	764
BsgI	GTGCAG	1 cut(s)	682
Bsh1236I	CGCG	2 cut(s)	715, 961
BshFI	GGCC	1 cut(s)	347
BsiHKAI	GWGCWC	3 cut(s)	64, 958, 1290
BslFI	GGGAC	1 cut(s)	507
BslI	CCNNNNNNNGG	2 cut(s)	423, 706
BsmAI	GTCTC	1 cut(s)	361
BsmFI	GGGAC	1 cut(s)	507
BsnI	GGCC	1 cut(s)	347
Bsp1286I	GDGCHC	4 cut(s)	64, 447, 958, 1290
Bsp143I	GATC	5 cut(s)	127, 602, 649, 859, 1462
Bsp19I	CCATGG	1 cut(s)	1268
BspACI	CCGC	3 cut(s)	537, 751, 959
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	2 cut(s)	304, 397
BspFNI	CGCG	2 cut(s)	715, 961
BspLI	GGNNCC	7 cut(s)	534, 560, 651, 825, 899, 1125, 1274
BspPI	GGATC	3 cut(s)	610, 644, 657
BspTI	CTTAAG	1 cut(s)	233
BsrI	ACTGG	7 cut(s)	87, 464, 534, 1054, 1143, 1341, 1366
BssECI	CCNNGG	4 cut(s)	471, 472, 489, 1268
BssMI	GATC	5 cut(s)	127, 602, 649, 859, 1462
BssT1I	CCWWGG	2 cut(s)	489, 1268
Bst2UI	CCWGG	2 cut(s)	473, 617
Bst4CI	ACNGT	3 cut(s)	66, 847, 1327
Bst6I	CTCTTC	1 cut(s)	313
BstAFI	CTTAAG	1 cut(s)	233
BstAPI	GCANNNNNTGC	3 cut(s)	23, 696, 1223
BstC8I	GCNNGC	4 cut(s)	209, 312, 661, 770
BstDEI	CTNAG	4 cut(s)	291, 405, 439, 1085
BstDSI	CCRYGG	1 cut(s)	1268
BstENI	CCTNNNNNAGG	1 cut(s)	704
BstF5I	GGATG	3 cut(s)	83, 244, 1264
BstFNI	CGCG	2 cut(s)	715, 961
BstHHI	GCGC	2 cut(s)	83, 715
BstKTI	GATC	5 cut(s)	130, 605, 652, 862, 1465
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	5 cut(s)	127, 602, 649, 859, 1462
BstNI	CCWGG	2 cut(s)	473, 617
BstNSI	RCATGY	2 cut(s)	772, 925
BstSCI	CCNGG	2 cut(s)	471, 615
BstSFI	CTRYAG	1 cut(s)	1323
BstSLI	GKGCMC	1 cut(s)	958
BstUI	CGCG	2 cut(s)	715, 961
BstV1I	GCAGC	8 cut(s)	10, 176, 223, 675, 760, 891, 1115, 1229
BstV2I	GAAGAC	3 cut(s)	42, 134, 724
BstX2I	RGATCY	2 cut(s)	602, 649
BstXI	CCANNNNNNTGG	1 cut(s)	908
BstYI	RGATCY	2 cut(s)	602, 649
BsuRI	GGCC	1 cut(s)	347
BtgI	CCRYGG	1 cut(s)	1268
BtsCI	GGATG	3 cut(s)	83, 244, 1264
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	4 cut(s)	94, 234, 279, 1334
Cac8I	GCNNGC	4 cut(s)	209, 312, 661, 770
CaiI	CAGNNNCTG	1 cut(s)	1223
CfoI	GCGC	2 cut(s)	83, 715
CseI	GACGC	1 cut(s)	1255
Csp6I	GTAC	2 cut(s)	467, 1300
CviAII	CATG	5 cut(s)	769, 922, 1045, 1100, 1269
CviQI	GTAC	2 cut(s)	467, 1300
DdeI	CTNAG	4 cut(s)	291, 405, 439, 1085
DpnI	GATC	5 cut(s)	129, 604, 651, 861, 1464
DpnII	GATC	5 cut(s)	127, 602, 649, 859, 1462
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
Eco130I	CCWWGG	2 cut(s)	489, 1268
Eco24I	GRGCYC	1 cut(s)	447
Eco32I	GATATC	1 cut(s)	757
Eco57I	CTGAAG	3 cut(s)	381, 828, 1214
EcoNI	CCTNNNNNAGG	1 cut(s)	704
EcoRII	CCWGG	2 cut(s)	471, 615
EcoRV	GATATC	1 cut(s)	757
EcoT14I	CCWWGG	2 cut(s)	489, 1268
EcoT22I	ATGCAT	2 cut(s)	289, 1050
EcoT38I	GRGCYC	1 cut(s)	447
ErhI	CCWWGG	2 cut(s)	489, 1268
FaeI	CATG	5 cut(s)	772, 925, 1048, 1103, 1272
FaqI	GGGAC	1 cut(s)	507
FatI	CATG	5 cut(s)	768, 921, 1044, 1099, 1268
FauI	CCCGC	2 cut(s)	544, 744
Fnu4HI	GCNGC	8 cut(s)	24, 165, 212, 664, 749, 905, 1104, 1218
FokI	GGATG	3 cut(s)	70, 251, 1251
FriOI	GRGCYC	1 cut(s)	447
Fsp4HI	GCNGC	8 cut(s)	24, 165, 212, 664, 749, 905, 1104, 1218
FspBI	CTAG	2 cut(s)	315, 656
GlaI	GCGC	2 cut(s)	82, 714
GluI	GCNGC	8 cut(s)	24, 165, 212, 664, 749, 905, 1104, 1218
GsaI	CCCAGC	1 cut(s)	768
GsuI	CTGGAG	2 cut(s)	884, 1160
HaeIII	GGCC	1 cut(s)	347
HgaI	GACGC	1 cut(s)	1255
HhaI	GCGC	2 cut(s)	83, 715
Hin1II	CATG	5 cut(s)	772, 925, 1048, 1103, 1272
Hin6I	GCGC	2 cut(s)	81, 713
HinP1I	GCGC	2 cut(s)	81, 713
HinfI	GANTC	7 cut(s)	51, 295, 481, 542, 635, 912, 1027
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	2 cut(s)	956, 1450
Hpy188III	TCNNGA	6 cut(s)	380, 625, 827, 1002, 1192, 1385
Hpy8I	GTNNAC	2 cut(s)	956, 1450
Hpy99I	CGWCG	1 cut(s)	389
HpyAV	CCTTC	2 cut(s)	216, 1215
HpyCH4III	ACNGT	3 cut(s)	66, 847, 1327
HpyCH4IV	ACGT	2 cut(s)	270, 387
HpyF3I	CTNAG	4 cut(s)	291, 405, 439, 1085
HpySE526I	ACGT	2 cut(s)	270, 387
Hsp92II	CATG	5 cut(s)	772, 925, 1048, 1103, 1272
HspAI	GCGC	2 cut(s)	81, 713
Kzo9I	GATC	5 cut(s)	127, 602, 649, 859, 1462
LmnI	GCTCC	3 cut(s)	506, 538, 903
Lsp1109I	GCAGC	8 cut(s)	10, 176, 223, 675, 760, 891, 1115, 1229
LweI	GCATC	7 cut(s)	92, 176, 194, 274, 296, 987, 1121
MaeI	CTAG	2 cut(s)	315, 656
MaeII	ACGT	2 cut(s)	270, 387
MaeIII	GTNAC	1 cut(s)	913
MalI	GATC	5 cut(s)	129, 604, 651, 861, 1464
MboI	GATC	5 cut(s)	127, 602, 649, 859, 1462
MfeI	CAATTG	2 cut(s)	192, 1349
MflI	RGATCY	2 cut(s)	602, 649
MhlI	GDGCHC	4 cut(s)	64, 447, 958, 1290
MlyI	GAGTC	3 cut(s)	629, 921, 1036
Mph1103I	ATGCAT	2 cut(s)	289, 1050
MroXI	GAANNNNTTC	3 cut(s)	113, 366, 721
MseI	TTAA	8 cut(s)	120, 234, 273, 339, 515, 644, 926, 1016
MslI	CAYNNNNRTG	1 cut(s)	920
MspA1I	CMGCKG	2 cut(s)	751, 904
MspCI	CTTAAG	1 cut(s)	233
MspR9I	CCNGG	2 cut(s)	473, 617
MunI	CAATTG	2 cut(s)	192, 1349
MvaI	CCWGG	2 cut(s)	473, 617
MvnI	CGCG	2 cut(s)	715, 961
NcoI	CCATGG	1 cut(s)	1268
NdeII	GATC	5 cut(s)	127, 602, 649, 859, 1462
NlaIII	CATG	5 cut(s)	772, 925, 1048, 1103, 1272
NlaIV	GGNNCC	7 cut(s)	534, 560, 651, 825, 899, 1125, 1274
NmuCI	GTSAC	1 cut(s)	913
NsiI	ATGCAT	2 cut(s)	289, 1050
NspI	RCATGY	2 cut(s)	772, 925
PaeI	GCATGC	1 cut(s)	772
PasI	CCCWGGG	1 cut(s)	472
PdmI	GAANNNNTTC	3 cut(s)	113, 366, 721
PfeI	GAWTC	4 cut(s)	51, 295, 481, 542
PfoI	TCCNGGA	1 cut(s)	615
PkrI	GCNGC	8 cut(s)	25, 166, 213, 665, 750, 906, 1105, 1219
PleI	GAGTC	3 cut(s)	629, 920, 1035
PpsI	GAGTC	3 cut(s)	629, 920, 1035
PsiI	TTATAA	1 cut(s)	1119
Psp6I	CCWGG	2 cut(s)	471, 615
PspFI	CCCAGC	1 cut(s)	764
PspGI	CCWGG	2 cut(s)	471, 615
PspN4I	GGNNCC	7 cut(s)	534, 560, 651, 825, 899, 1125, 1274
PstNI	CAGNNNCTG	1 cut(s)	1223
PsuI	RGATCY	2 cut(s)	602, 649
PvuII	CAGCTG	1 cut(s)	904
RsaI	GTAC	2 cut(s)	468, 1301
RsaNI	GTAC	2 cut(s)	467, 1300
RseI	CAYNNNNRTG	1 cut(s)	920
SaqAI	TTAA	8 cut(s)	120, 234, 273, 339, 515, 644, 926, 1016
SatI	GCNGC	8 cut(s)	24, 165, 212, 664, 749, 905, 1104, 1218
Sau3AI	GATC	5 cut(s)	127, 602, 649, 859, 1462
SchI	GAGTC	3 cut(s)	629, 921, 1036
ScrFI	CCNGG	2 cut(s)	473, 617
SduI	GDGCHC	4 cut(s)	64, 447, 958, 1290
SfaNI	GCATC	7 cut(s)	92, 176, 194, 274, 296, 987, 1121
SfcI	CTRYAG	1 cut(s)	1323
SmiMI	CAYNNNNRTG	1 cut(s)	920
SmlI	CTYRAG	3 cut(s)	233, 1000, 1107
SmoI	CTYRAG	3 cut(s)	233, 1000, 1107
SphI	GCATGC	1 cut(s)	772
SsiI	CCGC	3 cut(s)	537, 751, 959
SspI	AATATT	1 cut(s)	631
SspMI	CTAG	2 cut(s)	315, 656
StyD4I	CCNGG	2 cut(s)	471, 615
StyI	CCWWGG	2 cut(s)	489, 1268
TaaI	ACNGT	3 cut(s)	66, 847, 1327
TaiI	ACGT	2 cut(s)	273, 390
TaqI	TCGA	3 cut(s)	107, 145, 935
TfiI	GAWTC	4 cut(s)	51, 295, 481, 542
Tru1I	TTAA	8 cut(s)	120, 234, 273, 339, 515, 644, 926, 1016
Tru9I	TTAA	8 cut(s)	120, 234, 273, 339, 515, 644, 926, 1016
TscAI	CASTG	4 cut(s)	94, 234, 286, 1341
TseFI	GTSAC	1 cut(s)	913
TseI	GCWGC	8 cut(s)	23, 164, 211, 663, 748, 904, 1103, 1217
Tsp45I	GTSAC	1 cut(s)	913
TspDTI	ATGAA	7 cut(s)	17, 106, 255, 494, 957, 1033, 1088
TspRI	CASTG	4 cut(s)	94, 234, 286, 1341
Vha464I	CTTAAG	1 cut(s)	233
VneI	GTGCAC	1 cut(s)	954
XagI	CCTNNNNNAGG	1 cut(s)	704
XapI	RAATTY	5 cut(s)	262, 777, 971, 1039, 1375
XceI	RCATGY	2 cut(s)	772, 925
XcmI	CCANNNNNNNNNTGG	2 cut(s)	424, 1441
XmnI	GAANNNNTTC	3 cut(s)	113, 366, 721
XspI	CTAG	2 cut(s)	315, 656
Zsp2I	ATGCAT	2 cut(s)	289, 1050

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.