Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004628

Physical Location & Seq

Genomic Coordinates Reverse (-)

71920477 .. 71925471

Gene Structure 4995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG528400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1500 bp

ATGAAGAATAAGGAAAATACAAGGCATGCTGCCAGAGTTGAAGAGCCTACTGTTCGAATCACACGAGCACGGGCTAAAGCCTTTGCCACATCAGCAGCAGAGGGCCTCTGCCTTGCCTCCTCCTCAAAATCTCTTCTTAAACAAGGCCAAGGCCAAGGCCAGAAGCGAGCTCTTCCAGCAAATTCCAAACACGGGGGGGCATCAGCTTCTCTAGTTTCCACCATCGGCTTGCAGCACAAAAGAAGGGCAGTGCTTAAAGATGTAACGAATTCAAATGTCGACTGGACTGATGATGCATCTCAACTTCAGCCTGGCAAGCAGGCGAGAAGAGGGCCTGCAAAGAAGGTGAAGGTAGCCTCAAATCCAAGTGTTGCTGAACATTTTCCAATGGCTCAGGATGACATAAAAACAAAGTTAGCTGAGGAATTATCCAAAATAAGGGTGGCTGAACCACCAGAAAAGTTGCAAGTGAAAGAAGAGCCATTACCCCAGAGCATGTGTCATGCCTTGAGACAACATGGAGGAGCAGACCATTCCATTAAATCTGCTCAACTTCAGAGGCCTCAAAAGAAAGAAGAATATATGGTCTGCGAGAGATTGGGATCCTCAAATGACTTGGACATCGTGGACATTGACGCAAACTTAAAAGATCCTCTAGCATGCAGCTTGTATGCCCCTGATATATACAGTAATATACGGCTTACAGAGATAGAGCGAAGACCATCAACTAATTATATGGAAACCTTGCAGCAAGATATCACTCCAAGCATGCGAGGAATTTTGATTGATTGGCTTGTGGAGGTTTCTGAAGAATATAAGCTGGTTCCTGATACACTTTACCTCACTGTGAATCTCATTGATCGCTTTCTCTCACAGAACTTTGTTGAAAAGCAAAGGCTCCAGCTGCTTGGAGTCACTTGCATGTTAATTGCCTCGAAGTATGAAGAAATTGTTGCACCACGAGTGGAAGAATTTTGTCTCATCACGGACAATACTTACTCAAGAGAAGAGGTATTAGAAATGGAGAGTGAAGTACTAAATTTCTTGCACTTCCAGTTATCTGTTCCAACCACGAAAACATTTCTTAGGAGGTTTGTTCAAGCGGCACAAGCTTCTTATAAGGTTCCTTGTGTTGAACTGGAGTTCTTGGCAAATTATTTAGCAGAGTTAACTATTGTTGAATATGGCTTCTTGAAGTTCCTACCTTCCGTCATCGCTGCCTCTGCTGTGTTCCTTGCCAGATGGACACTTAATCAGTCAGACCATCCATGGGTCTGTTTTTCTCCTTGTATTCAAGGTTTTCCTCTTTATTTGAATACAAAACTGTCTGAGAAAAATGTTCATGTTTATTTCTGGCAGAACCCGACTTTAGAACACTATACCTCTTACAAAACATCAGAGCTCCACACTTCAGTTATTGCACTTGAAGATTTGCAATTGAACACCAAAGGCTGTTGCCTAAATGCTATACGTGAGAAGTATAGACACCAGAAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008283 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:2000026 GO:2000038 GO:2000123

KEGG Pathways

Metabolic & Signaling

ko04110 ko04152 ko04218 ko04914 ko05161 ko05165 ko05169 ko05203 map04110 map04152 map04218 map04914 map05161 map05165 map05169 map05203

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

499

Amino Acids

56.43

Weight (kDa)

7.92

Isoelectric Point (pI)

47.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	227 - 354	3.7e-48	Cyclin, N-terminal domain
Cyclin_C	PF02984	356 - 498	1.7e-25	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004628)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15570 AT5G11300 AT5G11300 AT5G25380 AT5G25380 AT5G25380 AT5G25380
fragaria_vesca	FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100 FvH4_2g30100
malus_domestica	MD08G1137300.v1.1 MD15G1115900.v1.1
prunus_persica	Prupe.1G467200_v2.0.a1
pyrus_communis	pycom08g11590 pycom15g10450
rosa_chinensis	RchiOBHm_Chr6g0312821
rosa_laevigata	RLG00000010295
rosa_multiflora	Rmu_co8351801.1_g000001 Rmu_sc0008049.1_g000007
rosa_roxburghii	Rroxscaffold_7G00156460
rosa_rugosa	Rorug06G0399900 Rorug06G0399900 Rorug06G0399900
rosa_samantha	Rh6AG517000 Rh6BG528400 Rh6CG533100 Rh6DG519600
rosa_wichuraiana	Rw6G044910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1119
AccI	GTMKAC	1 cut(s)	279
AciI	CCGC	1 cut(s)	1103
AclWI	GGATC	3 cut(s)	597, 610, 644
AcsI	RAATTY	5 cut(s)	181, 268, 777, 971, 1039
AcuI	CTGAAG	4 cut(s)	290, 539, 828, 1395
AfaI	GTAC	1 cut(s)	1035
AfiI	CCNNNNNNNGG	3 cut(s)	192, 438, 1270
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	8 cut(s)	170, 206, 419, 666, 820, 904, 1112, 1402
AluI	AGCT	8 cut(s)	170, 206, 419, 666, 820, 904, 1112, 1402
Alw21I	GWGCWC	3 cut(s)	70, 172, 1404
Alw26I	GTCTC	2 cut(s)	505, 983
AlwI	GGATC	3 cut(s)	597, 610, 644
AoxI	GGCC	6 cut(s)	103, 145, 151, 157, 332, 560
ApeKI	GCWGC	7 cut(s)	29, 95, 232, 663, 748, 904, 1217
ApoI	RAATTY	5 cut(s)	181, 268, 777, 971, 1039
Asp700I	GAANNNNTTC	1 cut(s)	381
AspS9I	GGNCC	2 cut(s)	103, 332
AsuHPI	GGTGA	1 cut(s)	358
AsuII	TTCGAA	1 cut(s)	55
BamHI	GGATCC	1 cut(s)	602
BanII	GRGCYC	2 cut(s)	172, 1404
BarI	GAAGNNNNNNTAC	2 cut(s)	468, 500
BauI	CACGAG	2 cut(s)	63, 960
BbsI	GAAGAC	1 cut(s)	724
Bbv12I	GWGCWC	3 cut(s)	70, 172, 1404
BbvCI	CCTCAGC	1 cut(s)	420
BbvI	GCAGC	7 cut(s)	16, 107, 244, 675, 760, 891, 1204
BccI	CCATC	4 cut(s)	230, 730, 1236, 1272
BceAI	ACGGC	1 cut(s)	713
BciT130I	CCWGG	1 cut(s)	312
BcoDI	GTCTC	2 cut(s)	505, 983
BfaI	CTAG	2 cut(s)	212, 656
BisI	GCNGC	8 cut(s)	30, 96, 233, 664, 749, 905, 1104, 1218
BlsI	GCNGC	8 cut(s)	31, 97, 234, 665, 750, 906, 1105, 1219
BmcAI	AGTACT	1 cut(s)	1035
Bme1390I	CCNGG	1 cut(s)	312
BmgT120I	GGNCC	2 cut(s)	103, 332
BmiI	GGNNCC	4 cut(s)	604, 825, 899, 1125
BmrFI	CCNGG	1 cut(s)	312
BmsI	GCATC	3 cut(s)	209, 283, 305
BpiI	GAAGAC	1 cut(s)	724
BpmI	CTGGAG	2 cut(s)	884, 1160
Bpu10I	CCTNAGC	2 cut(s)	393, 420
Bpu14I	TTCGAA	1 cut(s)	55
BpuEI	CTTGAG	2 cut(s)	529, 985
BsaAI	YACGTR	1 cut(s)	1472
BsaBI	GATNNNNATC	1 cut(s)	601
BsaJI	CCNNGG	3 cut(s)	148, 154, 1268
Bsc4I	CCNNNNNNNGG	3 cut(s)	192, 438, 1270
Bse1I	ACTGG	3 cut(s)	287, 1054, 1143
Bse8I	GATNNNNATC	1 cut(s)	601
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	3 cut(s)	148, 154, 1268
BseGI	GGATG	2 cut(s)	403, 1264
BseJI	GATNNNNATC	1 cut(s)	601
BseLI	CCNNNNNNNGG	3 cut(s)	192, 438, 1270
BseMII	CTCAG	3 cut(s)	407, 411, 1320
BseNI	ACTGG	3 cut(s)	287, 1054, 1143
BseRI	GAGGAG	3 cut(s)	109, 112, 537
BseXI	GCAGC	7 cut(s)	16, 107, 244, 675, 760, 891, 1204
BshFI	GGCC	6 cut(s)	105, 147, 153, 159, 334, 562
BsiHKAI	GWGCWC	3 cut(s)	70, 172, 1404
BslI	CCNNNNNNNGG	3 cut(s)	192, 438, 1270
BsmAI	GTCTC	2 cut(s)	505, 983
BsnI	GGCC	6 cut(s)	105, 147, 153, 159, 334, 562
Bsp119I	TTCGAA	1 cut(s)	55
Bsp1286I	GDGCHC	3 cut(s)	70, 172, 1404
Bsp143I	GATC	3 cut(s)	602, 649, 859
Bsp19I	CCATGG	1 cut(s)	1268
BspACI	CCGC	1 cut(s)	1103
BspANI	GGCC	6 cut(s)	105, 147, 153, 159, 334, 562
BspCNI	CTCAG	3 cut(s)	406, 412, 1321
BspLI	GGNNCC	4 cut(s)	604, 825, 899, 1125
BspPI	GGATC	3 cut(s)	597, 610, 644
BspQI	GCTCTTC	3 cut(s)	36, 177, 471
BspT104I	TTCGAA	1 cut(s)	55
BsrI	ACTGG	3 cut(s)	287, 1054, 1143
BssECI	CCNNGG	3 cut(s)	148, 154, 1268
BssMI	GATC	3 cut(s)	602, 649, 859
BssSI	CACGAG	2 cut(s)	63, 960
BssT1I	CCWWGG	3 cut(s)	148, 154, 1268
Bst2BI	CACGAG	2 cut(s)	63, 960
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	4 cut(s)	52, 689, 847, 1326
Bst6I	CTCTTC	6 cut(s)	36, 138, 177, 322, 471, 1002
BstBAI	YACGTR	1 cut(s)	1472
BstBI	TTCGAA	1 cut(s)	55
BstC8I	GCNNGC	8 cut(s)	27, 168, 230, 317, 321, 336, 661, 770
BstDEI	CTNAG	4 cut(s)	393, 420, 1085, 1329
BstDSI	CCRYGG	1 cut(s)	1268
BstF5I	GGATG	2 cut(s)	403, 1264
BstKTI	GATC	3 cut(s)	605, 652, 862
BstMAI	GTCTC	2 cut(s)	505, 983
BstMBI	GATC	3 cut(s)	602, 649, 859
BstMWI	GCNNNNNNNGC	6 cut(s)	92, 176, 316, 904, 1109, 1223
BstNI	CCWGG	1 cut(s)	312
BstNSI	RCATGY	5 cut(s)	29, 499, 663, 772, 925
BstSCI	CCNGG	1 cut(s)	310
BstV1I	GCAGC	7 cut(s)	16, 107, 244, 675, 760, 891, 1204
BstV2I	GAAGAC	1 cut(s)	724
BstX2I	RGATCY	2 cut(s)	602, 649
BstXI	CCANNNNNNTGG	1 cut(s)	908
BstYI	RGATCY	2 cut(s)	602, 649
BsuRI	GGCC	6 cut(s)	105, 147, 153, 159, 334, 562
BtgI	CCRYGG	1 cut(s)	1268
BtgZI	GCGATG	1 cut(s)	1198
BtsCI	GGATG	2 cut(s)	403, 1264
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	255, 843
Cac8I	GCNNGC	8 cut(s)	27, 168, 230, 317, 321, 336, 661, 770
Cfr13I	GGNCC	2 cut(s)	103, 332
CseI	GACGC	1 cut(s)	644
Csp6I	GTAC	1 cut(s)	1034
CviAII	CATG	9 cut(s)	26, 496, 503, 518, 660, 769, 922, 1269, 1343
CviQI	GTAC	1 cut(s)	1034
DdeI	CTNAG	4 cut(s)	393, 420, 1085, 1329
DpnI	GATC	3 cut(s)	604, 651, 861
DpnII	GATC	3 cut(s)	602, 649, 859
Eam1104I	CTCTTC	6 cut(s)	36, 138, 177, 322, 471, 1002
EarI	CTCTTC	6 cut(s)	36, 138, 177, 322, 471, 1002
Ecl136II	GAGCTC	2 cut(s)	170, 1402
Eco130I	CCWWGG	3 cut(s)	148, 154, 1268
Eco147I	AGGCCT	1 cut(s)	562
Eco24I	GRGCYC	2 cut(s)	172, 1404
Eco32I	GATATC	1 cut(s)	757
Eco53kI	GAGCTC	2 cut(s)	170, 1402
Eco57I	CTGAAG	4 cut(s)	290, 539, 828, 1395
EcoICRI	GAGCTC	2 cut(s)	170, 1402
EcoO109I	RGGNCCY	2 cut(s)	103, 332
EcoRI	GAATTC	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	310
EcoRV	GATATC	1 cut(s)	757
EcoT14I	CCWWGG	3 cut(s)	148, 154, 1268
EcoT22I	ATGCAT	1 cut(s)	298
EcoT38I	GRGCYC	2 cut(s)	172, 1404
ErhI	CCWWGG	3 cut(s)	148, 154, 1268
FaeI	CATG	9 cut(s)	29, 499, 506, 521, 663, 772, 925, 1272, 1346
FatI	CATG	9 cut(s)	25, 495, 502, 517, 659, 768, 921, 1268, 1342
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	8 cut(s)	30, 96, 233, 664, 749, 905, 1104, 1218
FokI	GGATG	2 cut(s)	410, 1251
FriOI	GRGCYC	2 cut(s)	172, 1404
Fsp4HI	GCNGC	8 cut(s)	30, 96, 233, 664, 749, 905, 1104, 1218
FspBI	CTAG	2 cut(s)	212, 656
GluI	GCNGC	8 cut(s)	30, 96, 233, 664, 749, 905, 1104, 1218
GsuI	CTGGAG	2 cut(s)	884, 1160
HaeIII	GGCC	6 cut(s)	105, 147, 153, 159, 334, 562
HgaI	GACGC	1 cut(s)	644
Hin1II	CATG	9 cut(s)	29, 499, 506, 521, 663, 772, 925, 1272, 1346
HincII	GTYRAC	2 cut(s)	280, 1170
HindII	GTYRAC	2 cut(s)	280, 1170
HindIII	AAGCTT	1 cut(s)	1110
HinfI	GANTC	3 cut(s)	57, 850, 912
HpaI	GTTAAC	1 cut(s)	1170
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	3 cut(s)	280, 628, 1170
Hpy188I	TCNGA	5 cut(s)	558, 808, 1261, 1330, 1399
Hpy188III	TCNNGA	4 cut(s)	395, 827, 1002, 1192
Hpy8I	GTNNAC	3 cut(s)	280, 628, 1170
HpyAV	CCTTC	5 cut(s)	237, 337, 343, 1215, 1486
HpyCH4III	ACNGT	4 cut(s)	52, 689, 847, 1326
HpyCH4IV	ACGT	1 cut(s)	1471
HpyF10VI	GCNNNNNNNGC	6 cut(s)	92, 176, 316, 904, 1109, 1223
HpyF3I	CTNAG	4 cut(s)	393, 420, 1085, 1329
HpySE526I	ACGT	1 cut(s)	1471
Hsp92II	CATG	9 cut(s)	29, 499, 506, 521, 663, 772, 925, 1272, 1346
KspAI	GTTAAC	1 cut(s)	1170
Kzo9I	GATC	3 cut(s)	602, 649, 859
LguI	GCTCTTC	3 cut(s)	36, 177, 471
LmnI	GCTCC	3 cut(s)	524, 903, 1407
Lsp1109I	GCAGC	7 cut(s)	16, 107, 244, 675, 760, 891, 1204
LweI	GCATC	3 cut(s)	209, 283, 305
MaeI	CTAG	2 cut(s)	212, 656
MaeII	ACGT	1 cut(s)	1471
MaeIII	GTNAC	2 cut(s)	262, 913
MalI	GATC	3 cut(s)	604, 651, 861
MboI	GATC	3 cut(s)	602, 649, 859
MfeI	CAATTG	1 cut(s)	1436
MflI	RGATCY	2 cut(s)	602, 649
MhlI	GDGCHC	3 cut(s)	70, 172, 1404
MlyI	GAGTC	1 cut(s)	921
MmeI	TCCRAC	1 cut(s)	1091
Mph1103I	ATGCAT	1 cut(s)	298
MroXI	GAANNNNTTC	1 cut(s)	381
MseI	TTAA	7 cut(s)	138, 255, 540, 644, 926, 1169, 1251
MslI	CAYNNNNRTG	1 cut(s)	920
MspA1I	CMGCKG	1 cut(s)	904
MspR9I	CCNGG	1 cut(s)	312
MunI	CAATTG	1 cut(s)	1436
MvaI	CCWGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	6 cut(s)	92, 176, 316, 904, 1109, 1223
NcoI	CCATGG	1 cut(s)	1268
NdeII	GATC	3 cut(s)	602, 649, 859
NlaIII	CATG	9 cut(s)	29, 499, 506, 521, 663, 772, 925, 1272, 1346
NlaIV	GGNNCC	4 cut(s)	604, 825, 899, 1125
NmuCI	GTSAC	1 cut(s)	913
NsiI	ATGCAT	1 cut(s)	298
NspI	RCATGY	5 cut(s)	29, 499, 663, 772, 925
NspV	TTCGAA	1 cut(s)	55
PaeI	GCATGC	3 cut(s)	29, 663, 772
PceI	AGGCCT	1 cut(s)	562
PciSI	GCTCTTC	3 cut(s)	36, 177, 471
PcsI	WCGNNNNNNNCGW	1 cut(s)	61
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	2 cut(s)	57, 850
PkrI	GCNGC	8 cut(s)	31, 97, 234, 665, 750, 906, 1105, 1219
PleI	GAGTC	1 cut(s)	920
PpsI	GAGTC	1 cut(s)	920
Ppu21I	YACGTR	1 cut(s)	1472
PsiI	TTATAA	1 cut(s)	1119
Psp124BI	GAGCTC	2 cut(s)	172, 1404
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	4 cut(s)	604, 825, 899, 1125
PspPI	GGNCC	2 cut(s)	103, 332
PsuI	RGATCY	2 cut(s)	602, 649
PvuII	CAGCTG	1 cut(s)	904
RsaI	GTAC	1 cut(s)	1035
RsaNI	GTAC	1 cut(s)	1034
RseI	CAYNNNNRTG	1 cut(s)	920
SacI	GAGCTC	2 cut(s)	172, 1404
SalI	GTCGAC	1 cut(s)	278
SapI	GCTCTTC	3 cut(s)	36, 177, 471
SaqAI	TTAA	7 cut(s)	138, 255, 540, 644, 926, 1169, 1251
SatI	GCNGC	8 cut(s)	30, 96, 233, 664, 749, 905, 1104, 1218
Sau3AI	GATC	3 cut(s)	602, 649, 859
Sau96I	GGNCC	2 cut(s)	103, 332
ScaI	AGTACT	1 cut(s)	1035
SchI	GAGTC	1 cut(s)	921
ScrFI	CCNGG	1 cut(s)	312
SduI	GDGCHC	3 cut(s)	70, 172, 1404
SfaNI	GCATC	3 cut(s)	209, 283, 305
SfuI	TTCGAA	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	920
SmlI	CTYRAG	2 cut(s)	508, 1000
SmoI	CTYRAG	2 cut(s)	508, 1000
SphI	GCATGC	3 cut(s)	29, 663, 772
SseBI	AGGCCT	1 cut(s)	562
SsiI	CCGC	1 cut(s)	1103
SspMI	CTAG	2 cut(s)	212, 656
SstI	GAGCTC	2 cut(s)	172, 1404
StuI	AGGCCT	1 cut(s)	562
StyD4I	CCNGG	1 cut(s)	310
StyI	CCWWGG	3 cut(s)	148, 154, 1268
TaaI	ACNGT	4 cut(s)	52, 689, 847, 1326
TaiI	ACGT	1 cut(s)	1474
TaqI	TCGA	3 cut(s)	55, 279, 935
TatI	WGTACW	1 cut(s)	1033
TauI	GCSGC	1 cut(s)	1106
TfiI	GAWTC	2 cut(s)	57, 850
Tru1I	TTAA	7 cut(s)	138, 255, 540, 644, 926, 1169, 1251
Tru9I	TTAA	7 cut(s)	138, 255, 540, 644, 926, 1169, 1251
TscAI	CASTG	2 cut(s)	255, 850
TseFI	GTSAC	1 cut(s)	913
TseI	GCWGC	7 cut(s)	29, 95, 232, 663, 748, 904, 1217
Tsp45I	GTSAC	1 cut(s)	913
TspDTI	ATGAA	3 cut(s)	17, 957, 1331
TspGWI	ACGGA	2 cut(s)	1001, 1198
TspRI	CASTG	2 cut(s)	255, 850
XapI	RAATTY	5 cut(s)	181, 268, 777, 971, 1039
XceI	RCATGY	5 cut(s)	29, 499, 663, 772, 925
XcmI	CCANNNNNNNNNTGG	1 cut(s)	439
XmiI	GTMKAC	1 cut(s)	279
XmnI	GAANNNNTTC	1 cut(s)	381
XspI	CTAG	2 cut(s)	212, 656
ZrmI	AGTACT	1 cut(s)	1035
Zsp2I	ATGCAT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.