AT5G13660

TPL-binding domain in jasmonate signalling

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
4404553 .. 4407288
2736 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G13660.4

Sequence Viewer

Length: 1611 bp
ATGATGAGAAAAGATATTAGCAGAAAGGATATAATTGAGGAGATTCCATATTCTGGTTCTTCGAGAATGGAATTAAAGCGGAGTCATCATCAGTGGTTGACAGAAGAGTCTAGCTCAGAACTATTCAGTAATAAGAGACAACAAGTGGTAGAGATTGATGCTCATATGAATTTATCTCCATGGGACACTTCTCTTGTGCCCTCACACTTCACTGATTGCTTATTCGATGATCCTGCCATTGCGCATACATCACATCTTCTCCGTAATGGTCGAAATTATACTGAGGAGCAATGCAATCCTGTTTCATCTTTTGGTTTGCCACTGGCTCATCACGGGAGCTCTTTTAATCTTGACACCATTAATAAAGTTAGCAACGTGCCCGAGTTCATGGTTCAGCTTTATGGTCAGGGAATTTCAACATCATTTGAAACGGCTCCTTCTTTTAATAGTGGTCAAGAGAGTACTACGCTATCCTTTGGCCAAACCTTCAGTAATACTGACAGGAGCTTCATCTTGCCAGGGCAGTTCGCTAGCAAAACAGATGGAAATTTCATTCGAAACTTCAATAATGAAGGTGTTGGTGTCGTACCGATTGGTGATTATTATGACAAAGGAGATGAAAATGTCCTGTCAACATTTCATCCGTTGGAGAAAGGAGTAGAAAACTTTCTATCGATGGGTCAGTCTCTTCAAAAGGCTGATTGTAATATCTTCTCAGTGAGTTCCTCCTATAATAAGGGACAGGAGAACTTTATGCCTCTTCTCTCTTGTGAACAAGTACCTGAATACGATTTCATGACCGAATCTAACTATCACAATGAAAATGCCAATGCGTTGTCAGCGGGACAGTCCTCATTTACGGAAGGCGGTGAGATGACATTTATGGTTTCTAGCCAAGAGAGAGCAGGTCAAAGCAATGATCAAATCAGGCGCGAGGATGATAGAAGCGAGACCCTATCTTTTGGAGATTGTCAGAAAGAAACCGCAATGGGATCATCAGTCCGTGTTAGTAACAATTATGAGAACTTCAGCCATGACCCTGCAATTACTAAAGATCCTCTTCATATCGAAGCAGAGGAAAATATGTCTTTTGAATGTAGAAATCCCCCTTATGCTAGTCCTAGAGTTGATACCTTGCTGGTGCCCAAAATTAAAGATACAAAGACAGCTAAGAAGGGTTCTACAAACACATTTCCTTCAAATGTTAAGTCCTTGTTGTCAACAGGAATCTTTGATGGAGTTACTGTGAAGTACTATTCGTGGTCACGTGAGAGAAATCTCAAAGGGATGATAAAGGGGACTGGGTATCTATGTGGTTGCGGCAACTGTAAACTTAATAAAGTTCTCAATGCGTATGAATTCGAGCAGCATGCTAATTGCAAGACAAAGCACCCAAATAACCACATATACTTTGAAAATGGAAAGACCATTTATGGCGTTGTTCAAGAACTGAAGAATACACCTCAGGAGAAGTTGTTTGATGCTATTCAAAATGTTACAGGATCTGACATCAACCATAAGAATTTCAACACATGGAAAGCTTCATATCACGTTGCTAGACTTGAACTTCAGCGTATCTATGGGAAGGATGATGTCACTTTGGCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

536

Amino Acids

60.23

Weight (kDa)

5.56

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 106
Acc16I TGCGCA 1 cut(s) 243
Acc36I ACCTGC 1 cut(s) 896
AccB1I GGYRCC 1 cut(s) 1141
AccB7I CCANNNNNTGG 1 cut(s) 53
AccII CGCG 1 cut(s) 933
AciI CCGC 5 cut(s) 79, 842, 867, 984, 1320
AclWI GGATC 4 cut(s) 224, 1000, 1049, 1510
AcoI YGGCCR 1 cut(s) 478
AcsI RAATTY 5 cut(s) 169, 411, 547, 1358, 1522
AcuI CTGAAG 4 cut(s) 472, 1012, 1472, 1553
AcvI CACGTG 1 cut(s) 1268
AfaI GTAC 4 cut(s) 463, 588, 780, 1253
AfiI CCNNNNNNNGG 1 cut(s) 53
AjnI CCWGG 1 cut(s) 517
AluBI AGCT 6 cut(s) 114, 339, 397, 507, 1169, 1541
AluI AGCT 6 cut(s) 114, 339, 397, 507, 1169, 1541
Alw21I GWGCWC 1 cut(s) 341
Alw26I GTCTC 3 cut(s) 130, 690, 944
AlwI GGATC 4 cut(s) 224, 1000, 1049, 1510
AlwNI CAGNNNCTG 1 cut(s) 1505
Ama87I CYCGRG 1 cut(s) 380
AoxI GGCC 1 cut(s) 478
ApeKI GCWGC 1 cut(s) 1366
ApoI RAATTY 5 cut(s) 169, 411, 547, 1358, 1522
ArsI GACNNNNNNTTYG 2 cut(s) 1193, 1225
AseI ATTAAT 1 cut(s) 360
Asp700I GAANNNNTTC 1 cut(s) 666
AspLEI GCGC 2 cut(s) 244, 933
AsuHPI GGTGA 2 cut(s) 608, 881
AsuII TTCGAA 1 cut(s) 556
AsuNHI GCTAGC 1 cut(s) 530
AvaI CYCGRG 1 cut(s) 380
AxyI CCTNAGG 1 cut(s) 1464
BaeGI GKGCMC 3 cut(s) 201, 381, 1146
BalI TGGCCA 1 cut(s) 480
BanI GGYRCC 1 cut(s) 1141
BanII GRGCYC 1 cut(s) 341
BbrPI CACGTG 1 cut(s) 1268
Bbv12I GWGCWC 1 cut(s) 341
BbvI GCAGC 1 cut(s) 1378
BccI CCATC 3 cut(s) 536, 670, 1229
BceAI ACGGC 1 cut(s) 447
BcgI CGANNNNNNTGC 4 cut(s) 215, 249, 1352, 1386
BciT130I CCWGG 1 cut(s) 519
BclI TGATCA 1 cut(s) 919
BcoDI GTCTC 3 cut(s) 130, 690, 944
BfaI CTAG 6 cut(s) 111, 531, 891, 1116, 1122, 1557
BfuAI ACCTGC 1 cut(s) 896
BisI GCNGC 2 cut(s) 1321, 1367
BlsI GCNGC 2 cut(s) 1322, 1368
BmcAI AGTACT 2 cut(s) 463, 1253
Bme1390I CCNGG 1 cut(s) 519
BmeT110I CYCGRG 1 cut(s) 380
BmiI GGNNCC 2 cut(s) 435, 1143
BmrFI CCNGG 1 cut(s) 519
BmrI ACTGGG 1 cut(s) 1311
BmsI GCATC 2 cut(s) 148, 1471
BmtI GCTAGC 1 cut(s) 534
BmuI ACTGGG 1 cut(s) 1311
BplI GAGNNNNNCTC 2 cut(s) 98, 130
Bpu14I TTCGAA 1 cut(s) 556
Bsa29I ATCGAT 1 cut(s) 674
BsaAI YACGTR 1 cut(s) 1268
BsaI GGTCTC 1 cut(s) 944
BsaJI CCNNGG 2 cut(s) 179, 518
BsaXI ACNNNNNCTCC 6 cut(s) 243, 273, 1230, 1260, 1460, 1490
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 2 cut(s) 327, 1306
Bse21I CCTNAGG 1 cut(s) 1464
Bse3DI GCAATG 4 cut(s) 237, 296, 922, 993
BseBI CCWGG 1 cut(s) 519
BseCI ATCGAT 1 cut(s) 674
BseDI CCNNGG 2 cut(s) 179, 518
BseGI GGATG 4 cut(s) 640, 943, 1293, 1594
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMI GCAATG 4 cut(s) 237, 296, 922, 993
BseMII CTCAG 4 cut(s) 129, 273, 729, 1478
BseNI ACTGG 2 cut(s) 327, 1306
BseRI GAGGAG 2 cut(s) 53, 299
BseSI GKGCMC 3 cut(s) 201, 381, 1146
BseXI GCAGC 1 cut(s) 1378
Bsh1236I CGCG 1 cut(s) 933
BshFI GGCC 1 cut(s) 480
BshNI GGYRCC 1 cut(s) 1141
BshVI ATCGAT 1 cut(s) 674
BsiHKAI GWGCWC 1 cut(s) 341
BsiHKCI CYCGRG 1 cut(s) 380
BslFI GGGAC 4 cut(s) 197, 753, 858, 1312
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 3 cut(s) 130, 690, 944
BsmFI GGGAC 4 cut(s) 197, 753, 858, 1312
BsnI GGCC 1 cut(s) 480
Bso31I GGTCTC 1 cut(s) 944
BsoBI CYCGRG 1 cut(s) 380
Bsp119I TTCGAA 1 cut(s) 556
Bsp1286I GDGCHC 4 cut(s) 201, 341, 381, 1146
Bsp143I GATC 5 cut(s) 229, 919, 992, 1054, 1502
Bsp19I CCATGG 1 cut(s) 179
BspACI CCGC 5 cut(s) 79, 842, 867, 984, 1320
BspANI GGCC 1 cut(s) 480
BspCNI CTCAG 4 cut(s) 128, 274, 728, 1477
BspDI ATCGAT 1 cut(s) 674
BspFNI CGCG 1 cut(s) 933
BspHI TCATGA 1 cut(s) 795
BspLI GGNNCC 2 cut(s) 435, 1143
BspMI ACCTGC 1 cut(s) 896
BspOI GCTAGC 1 cut(s) 534
BspPI GGATC 4 cut(s) 224, 1000, 1049, 1510
BspT104I TTCGAA 1 cut(s) 556
BspT107I GGYRCC 1 cut(s) 1141
BspTNI GGTCTC 1 cut(s) 944
BsrDI GCAATG 4 cut(s) 237, 296, 922, 993
BsrI ACTGG 2 cut(s) 327, 1306
BssECI CCNNGG 2 cut(s) 179, 518
BssMI GATC 5 cut(s) 229, 919, 992, 1054, 1502
BssT1I CCWWGG 1 cut(s) 179
Bst2UI CCWGG 1 cut(s) 519
Bst4CI ACNGT 3 cut(s) 849, 1246, 1328
Bst6I CTCTTC 4 cut(s) 99, 693, 765, 1065
BstBAI YACGTR 1 cut(s) 1268
BstBI TTCGAA 1 cut(s) 556
BstC8I GCNNGC 2 cut(s) 532, 1371
BstDEI CTNAG 5 cut(s) 115, 282, 715, 1170, 1464
BstDSI CCRYGG 1 cut(s) 179
BstF5I GGATG 4 cut(s) 640, 943, 1293, 1594
BstFNI CGCG 1 cut(s) 933
BstHHI GCGC 2 cut(s) 244, 933
BstKTI GATC 5 cut(s) 232, 922, 995, 1057, 1505
BstMAI GTCTC 3 cut(s) 130, 690, 944
BstMBI GATC 5 cut(s) 229, 919, 992, 1054, 1502
BstMWI GCNNNNNNNGC 1 cut(s) 839
BstNI CCWGG 1 cut(s) 519
BstNSI RCATGY 1 cut(s) 1373
BstSCI CCNGG 1 cut(s) 517
BstSLI GKGCMC 3 cut(s) 201, 381, 1146
BstUI CGCG 1 cut(s) 933
BstV1I GCAGC 1 cut(s) 1378
BstX2I RGATCY 2 cut(s) 1054, 1502
BstYI RGATCY 2 cut(s) 1054, 1502
Bsu15I ATCGAT 1 cut(s) 674
Bsu36I CCTNAGG 1 cut(s) 1464
BsuRI GGCC 1 cut(s) 480
BsuTUI ATCGAT 1 cut(s) 674
BtgI CCRYGG 1 cut(s) 179
BtsCI GGATG 4 cut(s) 640, 943, 1293, 1594
BtsIMutI CAGTG 4 cut(s) 98, 210, 320, 723
BveI ACCTGC 1 cut(s) 896
Cac8I GCNNGC 2 cut(s) 532, 1371
CaiI CAGNNNCTG 1 cut(s) 1505
CciI TCATGA 1 cut(s) 795
CfoI GCGC 2 cut(s) 244, 933
ClaI ATCGAT 1 cut(s) 674
Csp6I GTAC 4 cut(s) 462, 587, 779, 1252
CviAII CATG 6 cut(s) 180, 388, 796, 1034, 1370, 1533
CviQI GTAC 4 cut(s) 462, 587, 779, 1252
DdeI CTNAG 5 cut(s) 115, 282, 715, 1170, 1464
DpnI GATC 5 cut(s) 231, 921, 994, 1056, 1504
DpnII GATC 5 cut(s) 229, 919, 992, 1054, 1502
DrdI GACNNNNNNGTC 1 cut(s) 106
DseDI GACNNNNNNGTC 1 cut(s) 106
EaeI YGGCCR 1 cut(s) 478
Eam1104I CTCTTC 4 cut(s) 99, 693, 765, 1065
EarI CTCTTC 4 cut(s) 99, 693, 765, 1065
Ecl136II GAGCTC 1 cut(s) 339
Eco130I CCWWGG 1 cut(s) 179
Eco24I GRGCYC 1 cut(s) 341
Eco31I GGTCTC 1 cut(s) 944
Eco53kI GAGCTC 1 cut(s) 339
Eco57I CTGAAG 4 cut(s) 472, 1012, 1472, 1553
Eco72I CACGTG 1 cut(s) 1268
Eco81I CCTNAGG 1 cut(s) 1464
Eco88I CYCGRG 1 cut(s) 380
EcoICRI GAGCTC 1 cut(s) 339
EcoRI GAATTC 1 cut(s) 1358
EcoRII CCWGG 1 cut(s) 517
EcoT14I CCWWGG 1 cut(s) 179
EcoT38I GRGCYC 1 cut(s) 341
ErhI CCWWGG 1 cut(s) 179
FaeI CATG 6 cut(s) 183, 391, 799, 1037, 1373, 1536
FalI AAGNNNNNCTT 2 cut(s) 1044, 1076
FaqI GGGAC 4 cut(s) 197, 753, 858, 1312
FatI CATG 6 cut(s) 179, 387, 795, 1033, 1369, 1532
FauI CCCGC 1 cut(s) 835
FauNDI CATATG 1 cut(s) 165
FbaI TGATCA 1 cut(s) 919
Fnu4HI GCNGC 2 cut(s) 1321, 1367
FokI GGATG 4 cut(s) 627, 950, 1300, 1601
FriOI GRGCYC 1 cut(s) 341
Fsp4HI GCNGC 2 cut(s) 1321, 1367
FspBI CTAG 6 cut(s) 111, 531, 891, 1116, 1122, 1557
FspI TGCGCA 1 cut(s) 243
GlaI GCGC 2 cut(s) 243, 932
GluI GCNGC 2 cut(s) 1321, 1367
HaeIII GGCC 1 cut(s) 480
HhaI GCGC 2 cut(s) 244, 933
Hin1II CATG 6 cut(s) 183, 391, 799, 1037, 1373, 1536
Hin6I GCGC 2 cut(s) 242, 931
HinP1I GCGC 2 cut(s) 242, 931
HincII GTYRAC 3 cut(s) 99, 633, 1221
HindII GTYRAC 3 cut(s) 99, 633, 1221
HindIII AAGCTT 1 cut(s) 1539
HinfI GANTC 5 cut(s) 43, 82, 107, 803, 1227
HphI GGTGA 2 cut(s) 608, 881
Hpy166II GTNNAC 5 cut(s) 99, 633, 773, 1221, 1331
Hpy188I TCNGA 3 cut(s) 118, 975, 1507
Hpy188III TCNNGA 7 cut(s) 63, 350, 455, 796, 1445, 1466, 1608
Hpy8I GTNNAC 5 cut(s) 99, 633, 773, 1221, 1331
HpyAV CCTTC 7 cut(s) 447, 496, 566, 857, 1168, 1206, 1579
HpyCH4III ACNGT 3 cut(s) 849, 1246, 1328
HpyCH4IV ACGT 3 cut(s) 375, 1267, 1551
HpyCH4V TGCA 3 cut(s) 294, 1043, 1380
HpyF10VI GCNNNNNNNGC 1 cut(s) 839
HpyF3I CTNAG 5 cut(s) 115, 282, 715, 1170, 1464
HpySE526I ACGT 3 cut(s) 375, 1267, 1551
Hsp92II CATG 6 cut(s) 183, 391, 799, 1037, 1373, 1536
HspAI GCGC 2 cut(s) 242, 931
Ksp22I TGATCA 1 cut(s) 919
Kzo9I GATC 5 cut(s) 229, 919, 992, 1054, 1502
LmnI GCTCC 4 cut(s) 286, 336, 439, 504
Lsp1109I GCAGC 1 cut(s) 1378
LweI GCATC 2 cut(s) 148, 1471
MaeI CTAG 6 cut(s) 111, 531, 891, 1116, 1122, 1557
MaeII ACGT 3 cut(s) 375, 1267, 1551
MaeIII GTNAC 5 cut(s) 1010, 1240, 1263, 1495, 1594
MalI GATC 5 cut(s) 231, 921, 994, 1056, 1504
MboI GATC 5 cut(s) 229, 919, 992, 1054, 1502
MboII GAAGA 8 cut(s) 51, 116, 248, 680, 703, 752, 1052, 1465
MflI RGATCY 2 cut(s) 1054, 1502
MhlI GDGCHC 4 cut(s) 201, 341, 381, 1146
MlsI TGGCCA 1 cut(s) 480
MluNI TGGCCA 1 cut(s) 480
MlyI GAGTC 2 cut(s) 91, 116
MmeI TCCRAC 1 cut(s) 627
Mox20I TGGCCA 1 cut(s) 480
MroXI GAANNNNTTC 1 cut(s) 666
MscI TGGCCA 1 cut(s) 480
MseI TTAA 7 cut(s) 74, 345, 360, 444, 1152, 1206, 1335
Msp20I TGGCCA 1 cut(s) 480
MspA1I CMGCKG 1 cut(s) 842
MspR9I CCNGG 1 cut(s) 519
MvaI CCWGG 1 cut(s) 519
MvnI CGCG 1 cut(s) 933
MwoI GCNNNNNNNGC 1 cut(s) 839
NcoI CCATGG 1 cut(s) 179
NdeI CATATG 1 cut(s) 165
NdeII GATC 5 cut(s) 229, 919, 992, 1054, 1502
NheI GCTAGC 1 cut(s) 530
NlaIII CATG 6 cut(s) 183, 391, 799, 1037, 1373, 1536
NlaIV GGNNCC 2 cut(s) 435, 1143
NmuCI GTSAC 2 cut(s) 1263, 1594
NsbI TGCGCA 1 cut(s) 243
NspI RCATGY 1 cut(s) 1373
NspV TTCGAA 1 cut(s) 556
PaeI GCATGC 1 cut(s) 1373
PagI TCATGA 1 cut(s) 795
PdmI GAANNNNTTC 1 cut(s) 666
PfeI GAWTC 3 cut(s) 43, 803, 1227
PflMI CCANNNNNTGG 1 cut(s) 53
PkrI GCNGC 2 cut(s) 1322, 1368
PleI GAGTC 2 cut(s) 90, 115
PmaCI CACGTG 1 cut(s) 1268
PmlI CACGTG 1 cut(s) 1268
PpsI GAGTC 2 cut(s) 90, 115
Ppu21I YACGTR 1 cut(s) 1268
PshBI ATTAAT 1 cut(s) 360
Psp124BI GAGCTC 1 cut(s) 341
Psp6I CCWGG 1 cut(s) 517
PspCI CACGTG 1 cut(s) 1268
PspGI CCWGG 1 cut(s) 517
PspN4I GGNNCC 2 cut(s) 435, 1143
PstNI CAGNNNCTG 1 cut(s) 1505
PsuI RGATCY 2 cut(s) 1054, 1502
RsaI GTAC 4 cut(s) 463, 588, 780, 1253
RsaNI GTAC 4 cut(s) 462, 587, 779, 1252
SacI GAGCTC 1 cut(s) 341
SaqAI TTAA 7 cut(s) 74, 345, 360, 444, 1152, 1206, 1335
SatI GCNGC 2 cut(s) 1321, 1367
Sau3AI GATC 5 cut(s) 229, 919, 992, 1054, 1502
ScaI AGTACT 2 cut(s) 463, 1253
SchI GAGTC 2 cut(s) 91, 116
ScrFI CCNGG 1 cut(s) 519
SduI GDGCHC 4 cut(s) 201, 341, 381, 1146
SfaNI GCATC 2 cut(s) 148, 1471
SfuI TTCGAA 1 cut(s) 556
SphI GCATGC 1 cut(s) 1373
SsiI CCGC 5 cut(s) 79, 842, 867, 984, 1320
SspMI CTAG 6 cut(s) 111, 531, 891, 1116, 1122, 1557
SstI GAGCTC 1 cut(s) 341
StyD4I CCNGG 1 cut(s) 517
StyI CCWWGG 1 cut(s) 179
TaaI ACNGT 3 cut(s) 849, 1246, 1328
TaiI ACGT 3 cut(s) 378, 1270, 1554
TaqI TCGA 7 cut(s) 62, 225, 271, 556, 674, 1068, 1362
TaqII GACCGA 1 cut(s) 815
TatI WGTACW 2 cut(s) 461, 1251
TauI GCSGC 1 cut(s) 1323
TfiI GAWTC 3 cut(s) 43, 803, 1227
Tru1I TTAA 7 cut(s) 74, 345, 360, 444, 1152, 1206, 1335
Tru9I TTAA 7 cut(s) 74, 345, 360, 444, 1152, 1206, 1335
TscAI CASTG 4 cut(s) 98, 217, 327, 723
TseFI GTSAC 2 cut(s) 1263, 1594
TseI GCWGC 1 cut(s) 1366
Tsp45I GTSAC 2 cut(s) 1263, 1594
TspGWI ACGGA 4 cut(s) 251, 633, 875, 992
TspRI CASTG 4 cut(s) 98, 217, 327, 723
Van91I CCANNNNNTGG 1 cut(s) 53
VspI ATTAAT 1 cut(s) 360
XapI RAATTY 5 cut(s) 169, 411, 547, 1358, 1522
XceI RCATGY 1 cut(s) 1373
XmnI GAANNNNTTC 1 cut(s) 666
XspI CTAG 6 cut(s) 111, 531, 891, 1116, 1122, 1557
ZrmI AGTACT 2 cut(s) 463, 1253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.