TPL-binding domain in jasmonate signalling
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G13660 AT5G13660 AT5G13660 AT5G13660 AT5G13660 AT5G13660 AT5G13660 |
| fragaria_vesca | FvH4_7g21830 FvH4_7g21830 FvH4_7g21830 |
| malus_domestica | MD01G1123100.v1.1 MD07G1192800.v1.1 |
| prunus_persica | Prupe.2G230700_v2.0.a1 |
| pyrus_communis | pycom01g15000 pycom07g18230 |
| rosa_chinensis | RchiOBHm_Chr1g0366111 RchiOBHm_Chr7g0232731 |
| rosa_laevigata | RLG00000017112 RLG00000027367 |
| rosa_multiflora | Rmu_co7957917.1_g000001 Rmu_co8165832.1_g000001 Rmu_sc0003987.1_g000004 Rmu_sc0005795.1_g000008 |
| rosa_roxburghii | Rroxscaffold_3G00227900 Rroxscaffold_4G00290490 |
| rosa_rugosa | Rorug01G0133500.1 Rorug01G0327400 Rorug01G0327500 Rorug01G0327600 |
| rosa_samantha | Rh1AG335600 Rh1BG296800 Rh1CG313000 Rh1DG328700 Rh2AG150700 Rh2AG150900 Rh2BG156400 Rh2DG156300 Rh2DG156500 Rh7AG431000 Rh7AG431100 Rh7CG449600 Rh7CG449700 |
| rosa_wichuraiana | Rw1G029770 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 678, 804 |
| AccB1I | GGYRCC | 1 cut(s) | 1541 |
| AciI | CCGC | 3 cut(s) | 1693, 1719, 1761 |
| AclWI | GGATC | 5 cut(s) | 1172, 1232, 1245, 1253, 1266 |
| AcsI | RAATTY | 5 cut(s) | 415, 736, 778, 988, 1687 |
| AcuI | CTGAAG | 4 cut(s) | 285, 1253, 1637, 1718 |
| AcyI | GRCGYC | 1 cut(s) | 1647 |
| AfaI | GTAC | 3 cut(s) | 360, 628, 1038 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1268, 1431 |
| AjiI | CACGTC | 1 cut(s) | 1636 |
| AjnI | CCWGG | 4 cut(s) | 319, 373, 1225, 1424 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 377, 409 |
| AluBI | AGCT | 8 cut(s) | 76, 208, 924, 1176, 1208, 1277, 1343, 1615 |
| AluI | AGCT | 8 cut(s) | 76, 208, 924, 1176, 1208, 1277, 1343, 1615 |
| Alw21I | GWGCWC | 2 cut(s) | 78, 1109 |
| Alw26I | GTCTC | 5 cut(s) | 125, 483, 512, 597, 1512 |
| AlwI | GGATC | 5 cut(s) | 1172, 1232, 1245, 1253, 1266 |
| AoxI | GGCC | 7 cut(s) | 68, 119, 710, 839, 877, 1228, 1464 |
| ApeKI | GCWGC | 1 cut(s) | 1763 |
| ApoI | RAATTY | 5 cut(s) | 415, 736, 778, 988, 1687 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1625, 1657 |
| AseI | ATTAAT | 1 cut(s) | 1677 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 454, 1688 |
| AspS9I | GGNCC | 5 cut(s) | 68, 710, 840, 1046, 1464 |
| AsuC2I | CCSGG | 1 cut(s) | 1468 |
| AsuHPI | GGTGA | 6 cut(s) | 35, 389, 833, 1283, 1423, 1490 |
| AvaII | GGWCC | 1 cut(s) | 1046 |
| AxyI | CCTNAGG | 1 cut(s) | 1629 |
| BaeGI | GKGCMC | 1 cut(s) | 588 |
| BamHI | GGATCC | 2 cut(s) | 1237, 1258 |
| BanI | GGYRCC | 1 cut(s) | 1541 |
| BanII | GRGCYC | 1 cut(s) | 78 |
| BbsI | GAAGAC | 1 cut(s) | 498 |
| Bbv12I | GWGCWC | 2 cut(s) | 78, 1109 |
| BbvI | GCAGC | 1 cut(s) | 1750 |
| BccI | CCATC | 4 cut(s) | 784, 851, 1121, 1394 |
| BceAI | ACGGC | 1 cut(s) | 854 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1096, 1130, 1517, 1551 |
| BciT130I | CCWGG | 4 cut(s) | 321, 375, 1227, 1426 |
| BclI | TGATCA | 1 cut(s) | 1486 |
| BcnI | CCSGG | 1 cut(s) | 1468 |
| BcoDI | GTCTC | 5 cut(s) | 125, 483, 512, 597, 1512 |
| BfaI | CTAG | 3 cut(s) | 254, 957, 1335 |
| BfmI | CTRYAG | 1 cut(s) | 760 |
| BisI | GCNGC | 3 cut(s) | 1719, 1761, 1764 |
| BlsI | GCNGC | 3 cut(s) | 1720, 1762, 1765 |
| Bme1390I | CCNGG | 5 cut(s) | 321, 375, 1227, 1426, 1468 |
| Bme18I | GGWCC | 1 cut(s) | 1046 |
| BmgBI | CACGTC | 1 cut(s) | 1636 |
| BmgT120I | GGNCC | 5 cut(s) | 68, 710, 840, 1046, 1464 |
| BmiI | GGNNCC | 5 cut(s) | 1239, 1260, 1308, 1465, 1543 |
| BmrFI | CCNGG | 5 cut(s) | 321, 375, 1227, 1426, 1468 |
| BmsI | GCATC | 4 cut(s) | 226, 584, 1704, 1715 |
| BpiI | GAAGAC | 1 cut(s) | 498 |
| BpuMI | CCSGG | 1 cut(s) | 1468 |
| BsaBI | GATNNNNATC | 1 cut(s) | 868 |
| BsaHI | GRCGYC | 1 cut(s) | 1647 |
| BsaJI | CCNNGG | 4 cut(s) | 47, 179, 287, 373 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1033, 1063, 1654, 1684 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1268, 1431 |
| Bse1I | ACTGG | 6 cut(s) | 122, 356, 880, 1048, 1241, 1393 |
| Bse21I | CCTNAGG | 1 cut(s) | 1629 |
| Bse3DI | GCAATG | 2 cut(s) | 237, 652 |
| Bse8I | GATNNNNATC | 1 cut(s) | 868 |
| BseBI | CCWGG | 4 cut(s) | 321, 375, 1227, 1426 |
| BseDI | CCNNGG | 4 cut(s) | 47, 179, 287, 373 |
| BseGI | GGATG | 3 cut(s) | 241, 862, 1555 |
| BseJI | GATNNNNATC | 1 cut(s) | 868 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1268, 1431 |
| BseMI | GCAATG | 2 cut(s) | 237, 652 |
| BseMII | CTCAG | 4 cut(s) | 342, 523, 549, 1643 |
| BseNI | ACTGG | 6 cut(s) | 122, 356, 880, 1048, 1241, 1393 |
| BseRI | GAGGAG | 2 cut(s) | 615, 1335 |
| BseSI | GKGCMC | 1 cut(s) | 588 |
| BseXI | GCAGC | 1 cut(s) | 1750 |
| BsgI | GTGCAG | 1 cut(s) | 1749 |
| BshFI | GGCC | 7 cut(s) | 70, 121, 712, 841, 879, 1230, 1466 |
| BshNI | GGYRCC | 1 cut(s) | 1541 |
| BsiHKAI | GWGCWC | 2 cut(s) | 78, 1109 |
| BsiSI | CCGG | 2 cut(s) | 71, 1467 |
| BslFI | GGGAC | 2 cut(s) | 214, 566 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1268, 1431 |
| BsmAI | GTCTC | 5 cut(s) | 125, 483, 512, 597, 1512 |
| BsmBI | CGTCTC | 1 cut(s) | 125 |
| BsmFI | GGGAC | 2 cut(s) | 214, 566 |
| BsmI | GAATGC | 2 cut(s) | 700, 1036 |
| BsnI | GGCC | 7 cut(s) | 70, 121, 712, 841, 879, 1230, 1466 |
| Bsp1286I | GDGCHC | 3 cut(s) | 78, 588, 1109 |
| Bsp143I | GATC | 5 cut(s) | 334, 1164, 1237, 1258, 1486 |
| BspACI | CCGC | 3 cut(s) | 1693, 1719, 1761 |
| BspANI | GGCC | 7 cut(s) | 70, 121, 712, 841, 879, 1230, 1466 |
| BspCNI | CTCAG | 4 cut(s) | 343, 522, 550, 1642 |
| BspHI | TCATGA | 2 cut(s) | 940, 1132 |
| BspLI | GGNNCC | 5 cut(s) | 1239, 1260, 1308, 1465, 1543 |
| BspPI | GGATC | 5 cut(s) | 1172, 1232, 1245, 1253, 1266 |
| BspQI | GCTCTTC | 1 cut(s) | 83 |
| BspT107I | GGYRCC | 1 cut(s) | 1541 |
| BsrDI | GCAATG | 2 cut(s) | 237, 652 |
| BsrI | ACTGG | 6 cut(s) | 122, 356, 880, 1048, 1241, 1393 |
| BssECI | CCNNGG | 4 cut(s) | 47, 179, 287, 373 |
| BssMI | GATC | 5 cut(s) | 334, 1164, 1237, 1258, 1486 |
| BssNI | GRCGYC | 1 cut(s) | 1647 |
| Bst2UI | CCWGG | 4 cut(s) | 321, 375, 1227, 1426 |
| Bst4CI | ACNGT | 3 cut(s) | 764, 1215, 1660 |
| Bst6I | CTCTTC | 2 cut(s) | 83, 684 |
| BstACI | GRCGYC | 1 cut(s) | 1647 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 236 |
| BstC8I | GCNNGC | 3 cut(s) | 119, 228, 251 |
| BstDEI | CTNAG | 4 cut(s) | 351, 509, 558, 1629 |
| BstDSI | CCRYGG | 3 cut(s) | 47, 179, 287 |
| BstEII | GGTNACC | 2 cut(s) | 41, 173 |
| BstF5I | GGATG | 3 cut(s) | 241, 862, 1555 |
| BstKTI | GATC | 5 cut(s) | 337, 1167, 1240, 1261, 1489 |
| BstMAI | GTCTC | 5 cut(s) | 125, 483, 512, 597, 1512 |
| BstMBI | GATC | 5 cut(s) | 334, 1164, 1237, 1258, 1486 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 236, 1340 |
| BstNI | CCWGG | 4 cut(s) | 321, 375, 1227, 1426 |
| BstPI | GGTNACC | 2 cut(s) | 41, 173 |
| BstSCI | CCNGG | 5 cut(s) | 319, 373, 1225, 1424, 1466 |
| BstSFI | CTRYAG | 1 cut(s) | 760 |
| BstSLI | GKGCMC | 1 cut(s) | 588 |
| BstV1I | GCAGC | 1 cut(s) | 1750 |
| BstV2I | GAAGAC | 1 cut(s) | 498 |
| BstX2I | RGATCY | 2 cut(s) | 1237, 1258 |
| BstYI | RGATCY | 2 cut(s) | 1237, 1258 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1629 |
| BsuRI | GGCC | 7 cut(s) | 70, 121, 712, 841, 879, 1230, 1466 |
| BtgI | CCRYGG | 3 cut(s) | 47, 179, 287 |
| BtgZI | GCGATG | 1 cut(s) | 1099 |
| BtrI | CACGTC | 1 cut(s) | 1636 |
| BtsCI | GGATG | 3 cut(s) | 241, 862, 1555 |
| BtsIMutI | CAGTG | 2 cut(s) | 330, 627 |
| Cac8I | GCNNGC | 3 cut(s) | 119, 228, 251 |
| CciI | TCATGA | 2 cut(s) | 940, 1132 |
| Cfr13I | GGNCC | 5 cut(s) | 68, 710, 840, 1046, 1464 |
| CseI | GACGC | 2 cut(s) | 1520, 1655 |
| Csp6I | GTAC | 3 cut(s) | 359, 627, 1037 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 603, 638 |
| CviAII | CATG | 4 cut(s) | 504, 941, 1133, 1535 |
| CviQI | GTAC | 3 cut(s) | 359, 627, 1037 |
| DdeI | CTNAG | 4 cut(s) | 351, 509, 558, 1629 |
| DpnI | GATC | 5 cut(s) | 336, 1166, 1239, 1260, 1488 |
| DpnII | GATC | 5 cut(s) | 334, 1164, 1237, 1258, 1486 |
| Eam1104I | CTCTTC | 2 cut(s) | 83, 684 |
| EarI | CTCTTC | 2 cut(s) | 83, 684 |
| Ecl136II | GAGCTC | 1 cut(s) | 76 |
| Eco24I | GRGCYC | 1 cut(s) | 78 |
| Eco47I | GGWCC | 1 cut(s) | 1046 |
| Eco53kI | GAGCTC | 1 cut(s) | 76 |
| Eco57I | CTGAAG | 4 cut(s) | 285, 1253, 1637, 1718 |
| Eco81I | CCTNAGG | 1 cut(s) | 1629 |
| Eco91I | GGTNACC | 2 cut(s) | 41, 173 |
| EcoICRI | GAGCTC | 1 cut(s) | 76 |
| EcoO109I | RGGNCCY | 1 cut(s) | 710 |
| EcoO65I | GGTNACC | 2 cut(s) | 41, 173 |
| EcoRII | CCWGG | 4 cut(s) | 319, 373, 1225, 1424 |
| EcoT38I | GRGCYC | 1 cut(s) | 78 |
| Esp3I | CGTCTC | 1 cut(s) | 125 |
| FaeI | CATG | 4 cut(s) | 507, 944, 1136, 1538 |
| FaqI | GGGAC | 2 cut(s) | 214, 566 |
| FatI | CATG | 4 cut(s) | 503, 940, 1132, 1534 |
| FauNDI | CATATG | 1 cut(s) | 886 |
| FbaI | TGATCA | 1 cut(s) | 1486 |
| Fnu4HI | GCNGC | 3 cut(s) | 1719, 1761, 1764 |
| FokI | GGATG | 3 cut(s) | 248, 869, 1542 |
| FriOI | GRGCYC | 1 cut(s) | 78 |
| Fsp4HI | GCNGC | 3 cut(s) | 1719, 1761, 1764 |
| FspBI | CTAG | 3 cut(s) | 254, 957, 1335 |
| GluI | GCNGC | 3 cut(s) | 1719, 1761, 1764 |
| HaeIII | GGCC | 7 cut(s) | 70, 121, 712, 841, 879, 1230, 1466 |
| HapII | CCGG | 2 cut(s) | 71, 1467 |
| HgaI | GACGC | 2 cut(s) | 1520, 1655 |
| Hin1I | GRCGYC | 1 cut(s) | 1647 |
| Hin1II | CATG | 4 cut(s) | 507, 944, 1136, 1538 |
| HpaII | CCGG | 2 cut(s) | 71, 1467 |
| HphI | GGTGA | 6 cut(s) | 35, 389, 833, 1283, 1423, 1490 |
| Hpy166II | GTNNAC | 1 cut(s) | 1730 |
| Hpy188I | TCNGA | 7 cut(s) | 130, 347, 527, 559, 1008, 1219, 1683 |
| Hpy188III | TCNNGA | 9 cut(s) | 21, 153, 261, 941, 1133, 1610, 1631, 1699, 1773 |
| Hpy8I | GTNNAC | 1 cut(s) | 1730 |
| HpyAV | CCTTC | 5 cut(s) | 529, 723, 1164, 1228, 1371 |
| HpyCH4III | ACNGT | 3 cut(s) | 764, 1215, 1660 |
| HpyCH4IV | ACGT | 1 cut(s) | 1635 |
| HpyCH4V | TGCA | 7 cut(s) | 575, 698, 965, 1282, 1494, 1601, 1766 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 236, 1340 |
| HpyF3I | CTNAG | 4 cut(s) | 351, 509, 558, 1629 |
| HpySE526I | ACGT | 1 cut(s) | 1635 |
| Hsp92I | GRCGYC | 1 cut(s) | 1647 |
| Hsp92II | CATG | 4 cut(s) | 507, 944, 1136, 1538 |
| Ksp22I | TGATCA | 1 cut(s) | 1486 |
| Kzo9I | GATC | 5 cut(s) | 334, 1164, 1237, 1258, 1486 |
| LguI | GCTCTTC | 1 cut(s) | 83 |
| LmnI | GCTCC | 3 cut(s) | 73, 205, 1348 |
| Lsp1109I | GCAGC | 1 cut(s) | 1750 |
| LweI | GCATC | 4 cut(s) | 226, 584, 1704, 1715 |
| MaeI | CTAG | 3 cut(s) | 254, 957, 1335 |
| MaeII | ACGT | 1 cut(s) | 1635 |
| MaeIII | GTNAC | 7 cut(s) | 41, 173, 752, 821, 1248, 1428, 1660 |
| MalI | GATC | 5 cut(s) | 336, 1166, 1239, 1260, 1488 |
| MboI | GATC | 5 cut(s) | 334, 1164, 1237, 1258, 1486 |
| MfeI | CAATTG | 1 cut(s) | 831 |
| MflI | RGATCY | 2 cut(s) | 1237, 1258 |
| MhlI | GDGCHC | 3 cut(s) | 78, 588, 1109 |
| MlyI | GAGTC | 3 cut(s) | 113, 548, 1090 |
| MmeI | TCCRAC | 2 cut(s) | 379, 1031 |
| MroXI | GAANNNNTTC | 2 cut(s) | 454, 1688 |
| MseI | TTAA | 7 cut(s) | 111, 243, 720, 746, 1317, 1512, 1677 |
| MslI | CAYNNNNRTG | 4 cut(s) | 746, 788, 998, 1539 |
| MspA1I | CMGCKG | 1 cut(s) | 1763 |
| MspI | CCGG | 2 cut(s) | 71, 1467 |
| MspR9I | CCNGG | 5 cut(s) | 321, 375, 1227, 1426, 1468 |
| MunI | CAATTG | 1 cut(s) | 831 |
| Mva1269I | GAATGC | 2 cut(s) | 700, 1036 |
| MvaI | CCWGG | 4 cut(s) | 321, 375, 1227, 1426 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 236, 1340 |
| NciI | CCSGG | 1 cut(s) | 1468 |
| NdeI | CATATG | 1 cut(s) | 886 |
| NdeII | GATC | 5 cut(s) | 334, 1164, 1237, 1258, 1486 |
| NlaIII | CATG | 4 cut(s) | 507, 944, 1136, 1538 |
| NlaIV | GGNNCC | 5 cut(s) | 1239, 1260, 1308, 1465, 1543 |
| NmuCI | GTSAC | 5 cut(s) | 41, 752, 821, 1248, 1428 |
| PagI | TCATGA | 2 cut(s) | 940, 1132 |
| PciSI | GCTCTTC | 1 cut(s) | 83 |
| PctI | GAATGC | 2 cut(s) | 700, 1036 |
| PdmI | GAANNNNTTC | 2 cut(s) | 454, 1688 |
| PfeI | GAWTC | 8 cut(s) | 29, 59, 161, 191, 439, 455, 522, 1289 |
| PkrI | GCNGC | 3 cut(s) | 1720, 1762, 1765 |
| PleI | GAGTC | 3 cut(s) | 112, 548, 1089 |
| PpsI | GAGTC | 3 cut(s) | 112, 548, 1089 |
| PshBI | ATTAAT | 1 cut(s) | 1677 |
| PsiI | TTATAA | 2 cut(s) | 678, 804 |
| Psp124BI | GAGCTC | 1 cut(s) | 78 |
| Psp6I | CCWGG | 4 cut(s) | 319, 373, 1225, 1424 |
| PspEI | GGTNACC | 2 cut(s) | 41, 173 |
| PspGI | CCWGG | 4 cut(s) | 319, 373, 1225, 1424 |
| PspN4I | GGNNCC | 5 cut(s) | 1239, 1260, 1308, 1465, 1543 |
| PspPI | GGNCC | 5 cut(s) | 68, 710, 840, 1046, 1464 |
| PsuI | RGATCY | 2 cut(s) | 1237, 1258 |
| RsaI | GTAC | 3 cut(s) | 360, 628, 1038 |
| RsaNI | GTAC | 3 cut(s) | 359, 627, 1037 |
| RseI | CAYNNNNRTG | 4 cut(s) | 746, 788, 998, 1539 |
| SacI | GAGCTC | 1 cut(s) | 78 |
| SapI | GCTCTTC | 1 cut(s) | 83 |
| SaqAI | TTAA | 7 cut(s) | 111, 243, 720, 746, 1317, 1512, 1677 |
| SatI | GCNGC | 3 cut(s) | 1719, 1761, 1764 |
| Sau3AI | GATC | 5 cut(s) | 334, 1164, 1237, 1258, 1486 |
| Sau96I | GGNCC | 5 cut(s) | 68, 710, 840, 1046, 1464 |
| SchI | GAGTC | 3 cut(s) | 113, 548, 1090 |
| ScrFI | CCNGG | 5 cut(s) | 321, 375, 1227, 1426, 1468 |
| SduI | GDGCHC | 3 cut(s) | 78, 588, 1109 |
| SfaNI | GCATC | 4 cut(s) | 226, 584, 1704, 1715 |
| SfcI | CTRYAG | 1 cut(s) | 760 |
| SinI | GGWCC | 1 cut(s) | 1046 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 746, 788, 998, 1539 |
| SsiI | CCGC | 3 cut(s) | 1693, 1719, 1761 |
| SspMI | CTAG | 3 cut(s) | 254, 957, 1335 |
| SstI | GAGCTC | 1 cut(s) | 78 |
| StyD4I | CCNGG | 5 cut(s) | 319, 373, 1225, 1424, 1466 |
| TaaI | ACNGT | 3 cut(s) | 764, 1215, 1660 |
| TaiI | ACGT | 1 cut(s) | 1638 |
| TaqI | TCGA | 5 cut(s) | 369, 489, 671, 1143, 1527 |
| TaqII | GACCGA | 1 cut(s) | 1236 |
| TauI | GCSGC | 2 cut(s) | 1721, 1763 |
| TfiI | GAWTC | 8 cut(s) | 29, 59, 161, 191, 439, 455, 522, 1289 |
| Tru1I | TTAA | 7 cut(s) | 111, 243, 720, 746, 1317, 1512, 1677 |
| Tru9I | TTAA | 7 cut(s) | 111, 243, 720, 746, 1317, 1512, 1677 |
| TscAI | CASTG | 2 cut(s) | 337, 627 |
| TseFI | GTSAC | 5 cut(s) | 41, 752, 821, 1248, 1428 |
| TseI | GCWGC | 1 cut(s) | 1763 |
| Tsp45I | GTSAC | 5 cut(s) | 41, 752, 821, 1248, 1428 |
| TspGWI | ACGGA | 4 cut(s) | 218, 376, 385, 1271 |
| TspRI | CASTG | 2 cut(s) | 337, 627 |
| VpaK11BI | GGWCC | 1 cut(s) | 1046 |
| VspI | ATTAAT | 1 cut(s) | 1677 |
| XapI | RAATTY | 5 cut(s) | 415, 736, 778, 988, 1687 |
| XmnI | GAANNNNTTC | 2 cut(s) | 454, 1688 |
| XspI | CTAG | 3 cut(s) | 254, 957, 1335 |