FvH4_7g21830

TPL-binding domain in jasmonate signalling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002230
Physical Location & Seq
Reverse (-)
17371399 .. 17375783
4385 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g21830.t3

Sequence Viewer

Length: 1635 bp
ATGGAAGCCAATGGACCAGATCTGTTCAACAACAAGAAGCAAGCAATGGAAGCTGTTGATGGCAGGCCAATTTCAAGAGCTCCAAACTTGGCTGTTGCCCAGTGGGATAACACTTCTGGGTTTCAGACAGTTCCAGGGCAGTTCACTGACCACTTTTTTGGACAAGAGCCTGGAAGGACAGTCAACCTAGTTGATAGAAACATTCAGTCTGTTGGAAGTGGAACTATGAATTTTGGAAGAAAAGGGTTTCAGAGTCAACACCGCAATGATCAGTCAGTAAATTTGTCAATGTCCCACACCATTGAAGATCCTTCATCATGTCTCAGTTTTGGTGGAATCAGAAAAGTGAAAGTCAATGAAGTTAAGGACTCTGATAATGCCGTGTCTGCATCTATGGGGAACTCCTACAGAAGGGGAGACAATAATACAATTTCAATGTGTACTAACAAGAGTGATGAAAACATCATTTCATTAAGTCCACCTTACAATGATAACGAGAATGCCATCTCATTAGGGACTACCTTTAATAAGGCAGATGACAATTTCATCTCAGCTGGTCACACTTTTGGCAAGGGAGATGACACTTTCATATCGATGGCTCCTAATTACAGCAAGGGTGACACTCGTATGTTATCAATGGGTCAGCCCTTTGAGAAGGAGAATGGAAGTTTTATATCAATTGGTCAGTCATATGAAAAGGGAGACGGCAGTTTCATATCATTAGGCAACTCCTACAACAAAGTGCATGAGAATTTCATTTCTATGGGTCCGGTATATGGTGGAGGAGATGATAATTTGATCTCAGCGGCTCCGACCTATGATAAGCATGCTGATAACACTATATCAATGGGTCTGACCTATGACAAGGCTGATTCAAATATTTTACCAATGGGTCCTCACTATGATAAATCAGATAGAGATCTACATGTGAGTCATAATTTCAATAAGAATGAGAGCAATACCATATCTTTTGGTGGTTTCCATGATGATTCTGAGACAAACCCTTCTGGTGGGATCATCAATAGCTGCAGTTTGTTGACATGTAATCAGAACGCAACAGCTCAACCATCGGAAGAATCTGGTTTGAGAAATTATGATCATCCTACTGAGTCGAAGATGGATGCACATGTAGTTGACCCTGTGAAAATTGATTCCAAAGCTGTTAATATTCCCAAAGTAAAACAGCCAAAAACTAAGAAAGCTCCTCCAAACAACTTTCCGTCCAATGTCAAAAGCTTGTTGTCAACTGGTATCTTTGATGGTATTCGTGTGAAGTATTCTTCCTGGTCACGGGAGAAAAACCTCGATGGAATCATCAAAGGGGCTGGGTATCTGTGCTCTTGTGCTGACTGCAATCACTCAAAGCCTCTTAATGCTTATGAGTTTGAGCGCCATGCTGGTGCCAAGACCAAACATCCCAATAATCACATCTACTTTGAGAATGGAAAGACCATCTATGCAGTAGTTCAAGAGCTGAAGACTACTCCTCAGGACATGTTGTTTGATGCAATTGAAAATGCGACAGGGTCGCAGATTAATCAGAAGAACTTTCGTGTCTGGAAAGCATCTTTCCAAGCTGCTACTCGTGAACTTCAGCGTATCTATGGAAAAGATGAAGTTGCTATACCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas

Protein Analysis

545

Amino Acids

59.65

Weight (kDa)

6.07

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 476 - 530 4.9e-13 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1400
AciI CCGC 2 cut(s) 262, 806
AclWI GGATC 2 cut(s) 302, 1022
AcsI RAATTY 3 cut(s) 229, 280, 751
AcuI CTGAAG 2 cut(s) 1496, 1577
AfaI GTAC 1 cut(s) 442
AfiI CCNNNNNNNGG 4 cut(s) 411, 776, 1010, 1290
AflIII ACRYGT 4 cut(s) 925, 1040, 1126, 1494
AgsI TTSAA 8 cut(s) 28, 75, 305, 435, 876, 943, 1469, 1514
AjnI CCWGG 3 cut(s) 133, 169, 1283
Alw21I GWGCWC 2 cut(s) 82, 1340
Alw26I GTCTC 4 cut(s) 326, 411, 696, 989
AlwI GGATC 2 cut(s) 302, 1022
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 2 cut(s) 1026, 1577
ApoI RAATTY 3 cut(s) 229, 280, 751
ArsI GACNNNNNNTTYG 4 cut(s) 140, 172, 1484, 1516
AseI ATTAAT 1 cut(s) 1536
AspLEI GCGC 1 cut(s) 1392
AspS9I GGNCC 3 cut(s) 14, 767, 893
AsuHPI GGTGA 1 cut(s) 629
AvaII GGWCC 3 cut(s) 14, 767, 893
AxyI CCTNAGG 1 cut(s) 1488
BanI GGYRCC 1 cut(s) 1400
BanII GRGCYC 1 cut(s) 82
BarI GAAGNNNNNNTAC 1 cut(s) 1608
BauI CACGAG 1 cut(s) 1584
BbsI GAAGAC 1 cut(s) 1484
Bbv12I GWGCWC 2 cut(s) 82, 1340
BbvI GCAGC 2 cut(s) 1013, 1564
BccI CCATC 8 cut(s) 53, 512, 589, 1075, 1111, 1253, 1301, 1460
BceAI ACGGC 2 cut(s) 365, 721
BciT130I CCWGG 3 cut(s) 135, 171, 1285
BclI TGATCA 2 cut(s) 268, 1096
BcoDI GTCTC 4 cut(s) 326, 411, 696, 989
BfaI CTAG 1 cut(s) 188
BfmI CTRYAG 2 cut(s) 406, 1027
BfoI RGCGCY 1 cut(s) 1393
BglII AGATCT 2 cut(s) 19, 919
BisI GCNGC 3 cut(s) 807, 1027, 1578
BlsI GCNGC 3 cut(s) 808, 1028, 1579
Bme1390I CCNGG 3 cut(s) 135, 171, 1285
Bme18I GGWCC 3 cut(s) 14, 767, 893
BmgT120I GGNCC 3 cut(s) 14, 767, 893
BmiI GGNNCC 5 cut(s) 600, 768, 810, 894, 1402
BmrFI CCNGG 3 cut(s) 135, 171, 1285
BmrI ACTGGG 1 cut(s) 94
BmsI GCATC 4 cut(s) 398, 1111, 1495, 1574
BmuI ACTGGG 1 cut(s) 94
BpiI GAAGAC 1 cut(s) 1484
Bsa29I ATCGAT 1 cut(s) 593
BsaBI GATNNNNATC 1 cut(s) 918
BsaJI CCNNGG 1 cut(s) 134
BsaWI WCCGGW 1 cut(s) 769
Bsc4I CCNNNNNNNGG 4 cut(s) 411, 776, 1010, 1290
Bse1I ACTGG 2 cut(s) 100, 1252
Bse21I CCTNAGG 1 cut(s) 1488
Bse3DI GCAATG 2 cut(s) 51, 271
Bse8I GATNNNNATC 1 cut(s) 918
BseBI CCWGG 3 cut(s) 135, 171, 1285
BseCI ATCGAT 1 cut(s) 593
BseDI CCNNGG 1 cut(s) 134
BseGI GGATG 3 cut(s) 1099, 1126, 1414
BseJI GATNNNNATC 1 cut(s) 918
BseLI CCNNNNNNNGG 4 cut(s) 411, 776, 1010, 1290
BseMI GCAATG 2 cut(s) 51, 271
BseMII CTCAG 6 cut(s) 337, 564, 816, 984, 1098, 1502
BseNI ACTGG 2 cut(s) 100, 1252
BseRI GAGGAG 3 cut(s) 798, 1194, 1476
BseXI GCAGC 2 cut(s) 1013, 1564
BseYI CCCAGC 1 cut(s) 1325
BshFI GGCC 1 cut(s) 67
BshNI GGYRCC 1 cut(s) 1400
BshVI ATCGAT 1 cut(s) 593
BsiHKAI GWGCWC 2 cut(s) 82, 1340
BsiSI CCGG 1 cut(s) 770
BslFI GGGAC 2 cut(s) 277, 529
BslI CCNNNNNNNGG 4 cut(s) 411, 776, 1010, 1290
BsmAI GTCTC 4 cut(s) 326, 411, 696, 989
BsmBI CGTCTC 1 cut(s) 696
BsmFI GGGAC 2 cut(s) 277, 529
BsmI GAATGC 1 cut(s) 505
BsnI GGCC 1 cut(s) 67
Bsp1286I GDGCHC 2 cut(s) 82, 1340
Bsp143I GATC 7 cut(s) 19, 268, 307, 798, 919, 1014, 1096
BspACI CCGC 2 cut(s) 262, 806
BspANI GGCC 1 cut(s) 67
BspCNI CTCAG 6 cut(s) 336, 563, 815, 985, 1099, 1501
BspDI ATCGAT 1 cut(s) 593
BspLI GGNNCC 5 cut(s) 600, 768, 810, 894, 1402
BspMAI CTGCAG 1 cut(s) 1031
BspPI GGATC 2 cut(s) 302, 1022
BspT107I GGYRCC 1 cut(s) 1400
BsrDI GCAATG 2 cut(s) 51, 271
BsrI ACTGG 2 cut(s) 100, 1252
BssECI CCNNGG 1 cut(s) 134
BssMI GATC 7 cut(s) 19, 268, 307, 798, 919, 1014, 1096
BssSI CACGAG 1 cut(s) 1584
Bst2BI CACGAG 1 cut(s) 1584
Bst2UI CCWGG 3 cut(s) 135, 171, 1285
Bst4CI ACNGT 2 cut(s) 130, 181
BstC8I GCNNGC 3 cut(s) 42, 65, 828
BstDEI CTNAG 7 cut(s) 323, 550, 802, 993, 1107, 1194, 1488
BstENI CCTNNNNNAGG 1 cut(s) 409
BstF5I GGATG 3 cut(s) 1099, 1126, 1414
BstH2I RGCGCY 1 cut(s) 1393
BstHHI GCGC 1 cut(s) 1392
BstKTI GATC 7 cut(s) 22, 271, 310, 801, 922, 1017, 1099
BstMAI GTCTC 4 cut(s) 326, 411, 696, 989
BstMBI GATC 7 cut(s) 19, 268, 307, 798, 919, 1014, 1096
BstMWI GCNNNNNNNGC 2 cut(s) 50, 386
BstNI CCWGG 3 cut(s) 135, 171, 1285
BstNSI RCATGY 5 cut(s) 830, 929, 1044, 1130, 1498
BstSCI CCNGG 3 cut(s) 133, 169, 1283
BstSFI CTRYAG 2 cut(s) 406, 1027
BstV1I GCAGC 2 cut(s) 1013, 1564
BstV2I GAAGAC 1 cut(s) 1484
BstX2I RGATCY 3 cut(s) 19, 307, 919
BstXI CCANNNNNNTGG 1 cut(s) 158
BstYI RGATCY 3 cut(s) 19, 307, 919
Bsu15I ATCGAT 1 cut(s) 593
Bsu36I CCTNAGG 1 cut(s) 1488
BsuRI GGCC 1 cut(s) 67
BsuTUI ATCGAT 1 cut(s) 593
BtsCI GGATG 3 cut(s) 1099, 1126, 1414
BtsIMutI CAGTG 2 cut(s) 107, 144
Cac8I GCNNGC 3 cut(s) 42, 65, 828
CfoI GCGC 1 cut(s) 1392
Cfr13I GGNCC 3 cut(s) 14, 767, 893
ClaI ATCGAT 1 cut(s) 593
Csp6I GTAC 1 cut(s) 441
CviAII CATG 9 cut(s) 318, 746, 827, 926, 983, 1041, 1127, 1394, 1495
CviQI GTAC 1 cut(s) 441
DdeI CTNAG 7 cut(s) 323, 550, 802, 993, 1107, 1194, 1488
DpnI GATC 7 cut(s) 21, 270, 309, 800, 921, 1016, 1098
DpnII GATC 7 cut(s) 19, 268, 307, 798, 919, 1014, 1096
Ecl136II GAGCTC 1 cut(s) 80
Eco24I GRGCYC 1 cut(s) 82
Eco47I GGWCC 3 cut(s) 14, 767, 893
Eco53kI GAGCTC 1 cut(s) 80
Eco57I CTGAAG 2 cut(s) 1496, 1577
Eco81I CCTNAGG 1 cut(s) 1488
EcoICRI GAGCTC 1 cut(s) 80
EcoNI CCTNNNNNAGG 1 cut(s) 409
EcoO109I RGGNCCY 1 cut(s) 893
EcoRII CCWGG 3 cut(s) 133, 169, 1283
EcoT38I GRGCYC 1 cut(s) 82
Esp3I CGTCTC 1 cut(s) 696
FaeI CATG 9 cut(s) 321, 749, 830, 929, 986, 1044, 1130, 1397, 1498
FalI AAGNNNNNCTT 2 cut(s) 466, 498
FaqI GGGAC 2 cut(s) 277, 529
FatI CATG 9 cut(s) 317, 745, 826, 925, 982, 1040, 1126, 1393, 1494
FauNDI CATATG 1 cut(s) 691
FbaI TGATCA 2 cut(s) 268, 1096
Fnu4HI GCNGC 3 cut(s) 807, 1027, 1578
FokI GGATG 3 cut(s) 1086, 1133, 1401
FriOI GRGCYC 1 cut(s) 82
Fsp4HI GCNGC 3 cut(s) 807, 1027, 1578
FspBI CTAG 1 cut(s) 188
GlaI GCGC 1 cut(s) 1391
GluI GCNGC 3 cut(s) 807, 1027, 1578
GsaI CCCAGC 1 cut(s) 1329
HaeII RGCGCY 1 cut(s) 1393
HaeIII GGCC 1 cut(s) 67
HapII CCGG 1 cut(s) 770
HhaI GCGC 1 cut(s) 1392
Hin1II CATG 9 cut(s) 321, 749, 830, 929, 986, 1044, 1130, 1397, 1498
Hin6I GCGC 1 cut(s) 1390
HinP1I GCGC 1 cut(s) 1390
HincII GTYRAC 5 cut(s) 184, 257, 1038, 1135, 1245
HindII GTYRAC 5 cut(s) 184, 257, 1038, 1135, 1245
HindIII AAGCTT 1 cut(s) 1234
HpaII CCGG 1 cut(s) 770
HphI GGTGA 1 cut(s) 629
Hpy166II GTNNAC 9 cut(s) 144, 184, 257, 441, 479, 1038, 1135, 1245, 1589
Hpy188III TCNNGA 6 cut(s) 75, 1469, 1490, 1558, 1586, 1632
Hpy8I GTNNAC 9 cut(s) 144, 184, 257, 441, 479, 1038, 1135, 1245, 1589
HpyAV CCTTC 5 cut(s) 168, 321, 405, 649, 1014
HpyCH4III ACNGT 2 cut(s) 130, 181
HpyCH4V TGCA 7 cut(s) 389, 745, 1029, 1124, 1353, 1460, 1508
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 386
HpyF3I CTNAG 7 cut(s) 323, 550, 802, 993, 1107, 1194, 1488
Hsp92II CATG 9 cut(s) 321, 749, 830, 929, 986, 1044, 1130, 1397, 1498
HspAI GCGC 1 cut(s) 1390
Ksp22I TGATCA 2 cut(s) 268, 1096
Kzo9I GATC 7 cut(s) 19, 268, 307, 798, 919, 1014, 1096
LmnI GCTCC 4 cut(s) 85, 604, 814, 1207
Lsp1109I GCAGC 2 cut(s) 1013, 1564
LweI GCATC 4 cut(s) 398, 1111, 1495, 1574
MaeI CTAG 1 cut(s) 188
MaeIII GTNAC 3 cut(s) 557, 617, 1287
MalI GATC 7 cut(s) 21, 270, 309, 800, 921, 1016, 1098
MboI GATC 7 cut(s) 19, 268, 307, 798, 919, 1014, 1096
MboII GAAGA 7 cut(s) 249, 317, 1085, 1126, 1272, 1489, 1555
MfeI CAATTG 2 cut(s) 678, 1509
MflI RGATCY 3 cut(s) 19, 307, 919
MhlI GDGCHC 2 cut(s) 82, 1340
MlyI GAGTC 4 cut(s) 262, 362, 940, 1118
MmeI TCCRAC 2 cut(s) 193, 836
MnlI CCTC 6 cut(s) 776, 906, 1215, 1313, 1377, 1497
MseI TTAA 6 cut(s) 363, 473, 525, 1164, 1371, 1536
MslI CAYNNNNRTG 5 cut(s) 264, 593, 626, 761, 1398
MspA1I CMGCKG 2 cut(s) 554, 806
MspI CCGG 1 cut(s) 770
MspR9I CCNGG 3 cut(s) 135, 171, 1285
MunI CAATTG 2 cut(s) 678, 1509
Mva1269I GAATGC 1 cut(s) 505
MvaI CCWGG 3 cut(s) 135, 171, 1285
MwoI GCNNNNNNNGC 2 cut(s) 50, 386
NdeI CATATG 1 cut(s) 691
NdeII GATC 7 cut(s) 19, 268, 307, 798, 919, 1014, 1096
NlaIII CATG 9 cut(s) 321, 749, 830, 929, 986, 1044, 1130, 1397, 1498
NlaIV GGNNCC 5 cut(s) 600, 768, 810, 894, 1402
NmuCI GTSAC 3 cut(s) 557, 617, 1287
NspI RCATGY 5 cut(s) 830, 929, 1044, 1130, 1498
PaeI GCATGC 1 cut(s) 830
PciI ACATGT 4 cut(s) 925, 1040, 1126, 1494
PctI GAATGC 1 cut(s) 505
PfeI GAWTC 6 cut(s) 336, 872, 989, 1076, 1151, 1311
PflFI GACNNNGTC 1 cut(s) 1525
PkrI GCNGC 3 cut(s) 808, 1028, 1579
PleI GAGTC 4 cut(s) 261, 362, 939, 1117
PpsI GAGTC 4 cut(s) 261, 362, 939, 1117
PpuMI RGGWCCY 1 cut(s) 893
PscI ACATGT 4 cut(s) 925, 1040, 1126, 1494
PshBI ATTAAT 1 cut(s) 1536
Psp124BI GAGCTC 1 cut(s) 82
Psp5II RGGWCCY 1 cut(s) 893
Psp6I CCWGG 3 cut(s) 133, 169, 1283
PspFI CCCAGC 1 cut(s) 1325
PspGI CCWGG 3 cut(s) 133, 169, 1283
PspN4I GGNNCC 5 cut(s) 600, 768, 810, 894, 1402
PspPI GGNCC 3 cut(s) 14, 767, 893
PspPPI RGGWCCY 1 cut(s) 893
PstI CTGCAG 1 cut(s) 1031
PsuI RGATCY 3 cut(s) 19, 307, 919
PsyI GACNNNGTC 1 cut(s) 1525
PvuII CAGCTG 1 cut(s) 554
RsaI GTAC 1 cut(s) 442
RsaNI GTAC 1 cut(s) 441
RseI CAYNNNNRTG 5 cut(s) 264, 593, 626, 761, 1398
SacI GAGCTC 1 cut(s) 82
SaqAI TTAA 6 cut(s) 363, 473, 525, 1164, 1371, 1536
SatI GCNGC 3 cut(s) 807, 1027, 1578
Sau3AI GATC 7 cut(s) 19, 268, 307, 798, 919, 1014, 1096
Sau96I GGNCC 3 cut(s) 14, 767, 893
SchI GAGTC 4 cut(s) 262, 362, 940, 1118
ScrFI CCNGG 3 cut(s) 135, 171, 1285
SduI GDGCHC 2 cut(s) 82, 1340
SfaNI GCATC 4 cut(s) 398, 1111, 1495, 1574
SfcI CTRYAG 2 cut(s) 406, 1027
SinI GGWCC 3 cut(s) 14, 767, 893
SmiMI CAYNNNNRTG 5 cut(s) 264, 593, 626, 761, 1398
SphI GCATGC 1 cut(s) 830
SsiI CCGC 2 cut(s) 262, 806
SspI AATATT 2 cut(s) 880, 1168
SspMI CTAG 1 cut(s) 188
SstI GAGCTC 1 cut(s) 82
StyD4I CCNGG 3 cut(s) 133, 169, 1283
TaaI ACNGT 2 cut(s) 130, 181
TaqI TCGA 3 cut(s) 593, 1112, 1305
TatI WGTACW 1 cut(s) 440
TauI GCSGC 1 cut(s) 809
TfiI GAWTC 6 cut(s) 336, 872, 989, 1076, 1151, 1311
Tru1I TTAA 6 cut(s) 363, 473, 525, 1164, 1371, 1536
Tru9I TTAA 6 cut(s) 363, 473, 525, 1164, 1371, 1536
TscAI CASTG 2 cut(s) 107, 151
TseFI GTSAC 3 cut(s) 557, 617, 1287
TseI GCWGC 2 cut(s) 1026, 1577
Tsp45I GTSAC 3 cut(s) 557, 617, 1287
TspGWI ACGGA 1 cut(s) 1209
TspRI CASTG 2 cut(s) 107, 151
Tth111I GACNNNGTC 1 cut(s) 1525
VpaK11BI GGWCC 3 cut(s) 14, 767, 893
VspI ATTAAT 1 cut(s) 1536
XagI CCTNNNNNAGG 1 cut(s) 409
XapI RAATTY 3 cut(s) 229, 280, 751
XceI RCATGY 5 cut(s) 830, 929, 1044, 1130, 1498
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.