Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002230

Physical Location & Seq

Genomic Coordinates Forward (+)

59178295 .. 59178861

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG449600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGAAAGATGGGCTGTGATAATTCTTCCAGGGTACAATTATATGGATGCCAATGGACCAGATCTGTTCAACAACAAGAAGCAAGCAATGGAGGCTGTTGATGGCAGGCCAGCTTCAAGAGCTTCAAACTTGGCCGTTGCCCCGTCGGATAACACTTCTGGGTTTCAGACAGTTCCAGGGAAGTTCACTGACTGCCTCTTTGGACAAGAGCCTGGACGGACAGTCAACTTAGTTGATATAAACATTCAGTCTGTTGGCAGTGGAACTACTAATTTTGGAAGAAAAGGGTTTCAGAATCAATATGGCAATGATCAATCAGTGGATCTGTCAATGTCCCACACCATCGAAGATCCTTCATCATGTCTAGGGTTTAGGGGTGGAATCAAGGAAGTGAAAGTCAATGAAGTTAAGGACTCTGATAATGCCGTTTTGGGAGACAATTATACAATTCCAATGTCTACAACCTATAACAAGAATGATGAAAACATCATTTCATTAAGTGCACCTTTGGGAGACAATTGTACAATTCCATTGTGTACAATGCTGACGAGAATGCCATCTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas

Protein Analysis

188

Amino Acids

20.38

Weight (kDa)

4.83

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13660 AT5G13660 AT5G13660 AT5G13660 AT5G13660 AT5G13660 AT5G13660
fragaria_vesca	FvH4_7g21830 FvH4_7g21830 FvH4_7g21830
malus_domestica	MD01G1123100.v1.1 MD07G1192800.v1.1
prunus_persica	Prupe.2G230700_v2.0.a1
pyrus_communis	pycom01g15000 pycom07g18230
rosa_chinensis	RchiOBHm_Chr1g0366111 RchiOBHm_Chr7g0232731
rosa_laevigata	RLG00000017112 RLG00000027367
rosa_multiflora	Rmu_co7957917.1_g000001 Rmu_co8165832.1_g000001 Rmu_sc0003987.1_g000004 Rmu_sc0005795.1_g000008
rosa_roxburghii	Rroxscaffold_3G00227900 Rroxscaffold_4G00290490
rosa_rugosa	Rorug01G0133500.1 Rorug01G0327400 Rorug01G0327500 Rorug01G0327600
rosa_samantha	Rh1AG335600 Rh1BG296800 Rh1CG313000 Rh1DG328700 Rh2AG150700 Rh2AG150900 Rh2BG156400 Rh2DG156300 Rh2DG156500 Rh7AG431000 Rh7AG431100 Rh7CG449600 Rh7CG449700
rosa_wichuraiana	Rw1G029770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	458
AclWI	GGATC	2 cut(s)	330, 344
AcoI	YGGCCR	1 cut(s)	132
AfaI	GTAC	3 cut(s)	35, 523, 538
AgsI	TTSAA	3 cut(s)	70, 117, 126
AhdI	GACNNNNNGTC	1 cut(s)	221
AjnI	CCWGG	3 cut(s)	28, 175, 211
AluBI	AGCT	2 cut(s)	113, 122
AluI	AGCT	2 cut(s)	113, 122
Alw21I	GWGCWC	1 cut(s)	505
Alw26I	GTCTC	2 cut(s)	429, 507
Alw44I	GTGCAC	1 cut(s)	501
AlwI	GGATC	2 cut(s)	330, 344
AoxI	GGCC	2 cut(s)	107, 132
ApaLI	GTGCAC	1 cut(s)	501
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
AspS9I	GGNCC	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	56
BaeGI	GKGCMC	1 cut(s)	505
Bbv12I	GWGCWC	1 cut(s)	505
BccI	CCATC	4 cut(s)	3, 95, 350, 565
BceAI	ACGGC	2 cut(s)	119, 410
BciT130I	CCWGG	3 cut(s)	30, 177, 213
BclI	TGATCA	1 cut(s)	310
BcoDI	GTCTC	2 cut(s)	429, 507
BfaI	CTAG	1 cut(s)	365
BglII	AGATCT	1 cut(s)	61
Bme1390I	CCNGG	3 cut(s)	30, 177, 213
Bme18I	GGWCC	1 cut(s)	56
BmeRI	GACNNNNNGTC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	56
BmrFI	CCNGG	3 cut(s)	30, 177, 213
BmsI	GCATC	1 cut(s)	37
BsaJI	CCNNGG	2 cut(s)	29, 176
Bse3DI	GCAATG	2 cut(s)	93, 313
BseBI	CCWGG	3 cut(s)	30, 177, 213
BseDI	CCNNGG	2 cut(s)	29, 176
BseGI	GGATG	1 cut(s)	52
BseMI	GCAATG	2 cut(s)	93, 313
BseSI	GKGCMC	1 cut(s)	505
BshFI	GGCC	2 cut(s)	109, 134
BsiHKAI	GWGCWC	1 cut(s)	505
BslFI	GGGAC	1 cut(s)	319
BsmAI	GTCTC	2 cut(s)	429, 507
BsmFI	GGGAC	1 cut(s)	319
BsmI	GAATGC	1 cut(s)	558
BsnI	GGCC	2 cut(s)	109, 134
Bsp1286I	GDGCHC	1 cut(s)	505
Bsp1407I	TGTACA	2 cut(s)	521, 536
Bsp143I	GATC	4 cut(s)	61, 310, 322, 349
BspANI	GGCC	2 cut(s)	109, 134
BspPI	GGATC	2 cut(s)	330, 344
BsrDI	GCAATG	2 cut(s)	93, 313
BsrGI	TGTACA	2 cut(s)	521, 536
BssECI	CCNNGG	2 cut(s)	29, 176
BssMI	GATC	4 cut(s)	61, 310, 322, 349
Bst2UI	CCWGG	3 cut(s)	30, 177, 213
Bst4CI	ACNGT	2 cut(s)	172, 223
BstAUI	TGTACA	2 cut(s)	521, 536
BstC8I	GCNNGC	3 cut(s)	84, 107, 111
BstDEI	CTNAG	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	52
BstKTI	GATC	4 cut(s)	64, 313, 325, 352
BstMAI	GTCTC	2 cut(s)	429, 507
BstMBI	GATC	4 cut(s)	61, 310, 322, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 119
BstNI	CCWGG	3 cut(s)	30, 177, 213
BstSCI	CCNGG	3 cut(s)	28, 175, 211
BstSLI	GKGCMC	1 cut(s)	505
BstX2I	RGATCY	3 cut(s)	61, 322, 349
BstYI	RGATCY	3 cut(s)	61, 322, 349
BsuRI	GGCC	2 cut(s)	109, 134
BtsCI	GGATG	1 cut(s)	52
BtsI	GCAGTG	1 cut(s)	265
BtsIMutI	CAGTG	3 cut(s)	186, 265, 324
Cac8I	GCNNGC	3 cut(s)	84, 107, 111
Cfr13I	GGNCC	1 cut(s)	56
Csp6I	GTAC	3 cut(s)	34, 522, 537
CviAII	CATG	1 cut(s)	360
CviJI	RGCY	7 cut(s)	14, 95, 109, 113, 122, 134, 211
CviKI_1	RGCY	7 cut(s)	14, 95, 109, 113, 122, 134, 211
CviQI	GTAC	3 cut(s)	34, 522, 537
DdeI	CTNAG	1 cut(s)	229
DpnI	GATC	4 cut(s)	63, 312, 324, 351
DpnII	GATC	4 cut(s)	61, 310, 322, 349
DriI	GACNNNNNGTC	1 cut(s)	221
EaeI	YGGCCR	1 cut(s)	132
Eam1105I	GACNNNNNGTC	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	56
EcoRII	CCWGG	3 cut(s)	28, 175, 211
FaeI	CATG	1 cut(s)	363
FaiI	YATR	7 cut(s)	42, 44, 239, 303, 361, 444, 468
FalI	AAGNNNNNCTT	2 cut(s)	490, 522
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	1 cut(s)	359
FbaI	TGATCA	1 cut(s)	310
FblI	GTMKAC	1 cut(s)	458
FokI	GGATG	1 cut(s)	59
FspBI	CTAG	1 cut(s)	365
HaeIII	GGCC	2 cut(s)	109, 134
Hin1II	CATG	1 cut(s)	363
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	3 cut(s)	295, 381, 413
Hpy166II	GTNNAC	5 cut(s)	186, 226, 459, 503, 537
Hpy188I	TCNGA	4 cut(s)	148, 168, 294, 418
Hpy188III	TCNNGA	1 cut(s)	117
Hpy8I	GTNNAC	5 cut(s)	186, 226, 459, 503, 537
Hpy99I	CGWCG	1 cut(s)	148
HpyAV	CCTTC	1 cut(s)	363
HpyCH4III	ACNGT	2 cut(s)	172, 223
HpyCH4V	TGCA	1 cut(s)	503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 119
HpyF3I	CTNAG	1 cut(s)	229
Hsp92II	CATG	1 cut(s)	363
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	4 cut(s)	61, 310, 322, 349
LweI	GCATC	1 cut(s)	37
MaeI	CTAG	1 cut(s)	365
MalI	GATC	4 cut(s)	63, 312, 324, 351
MboI	GATC	4 cut(s)	61, 310, 322, 349
MboII	GAAGA	3 cut(s)	17, 291, 359
MfeI	CAATTG	1 cut(s)	517
MflI	RGATCY	3 cut(s)	61, 322, 349
MhlI	GDGCHC	1 cut(s)	505
MluCI	AATT	7 cut(s)	21, 37, 271, 439, 447, 517, 525
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	2 cut(s)	85, 206
MseI	TTAA	2 cut(s)	408, 497
MspR9I	CCNGG	3 cut(s)	30, 177, 213
MunI	CAATTG	1 cut(s)	517
Mva1269I	GAATGC	1 cut(s)	558
MvaI	CCWGG	3 cut(s)	30, 177, 213
MwoI	GCNNNNNNNGC	2 cut(s)	92, 119
NdeII	GATC	4 cut(s)	61, 310, 322, 349
NlaIII	CATG	1 cut(s)	363
PctI	GAATGC	1 cut(s)	558
PfeI	GAWTC	2 cut(s)	295, 381
PleI	GAGTC	1 cut(s)	407
PpsI	GAGTC	1 cut(s)	407
Psp6I	CCWGG	3 cut(s)	28, 175, 211
PspGI	CCWGG	3 cut(s)	28, 175, 211
PspPI	GGNCC	1 cut(s)	56
PsuI	RGATCY	3 cut(s)	61, 322, 349
RsaI	GTAC	3 cut(s)	35, 523, 538
RsaNI	GTAC	3 cut(s)	34, 522, 537
SaqAI	TTAA	2 cut(s)	408, 497
Sau3AI	GATC	4 cut(s)	61, 310, 322, 349
Sau96I	GGNCC	1 cut(s)	56
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	3 cut(s)	30, 177, 213
SduI	GDGCHC	1 cut(s)	505
SetI	ASST	4 cut(s)	115, 124, 467, 508
SfaNI	GCATC	1 cut(s)	37
SinI	GGWCC	1 cut(s)	56
Sse9I	AATT	7 cut(s)	21, 37, 271, 439, 447, 517, 525
SspMI	CTAG	1 cut(s)	365
StyD4I	CCNGG	3 cut(s)	28, 175, 211
TaaI	ACNGT	2 cut(s)	172, 223
TaqI	TCGA	1 cut(s)	345
TasI	AATT	7 cut(s)	21, 37, 271, 439, 447, 517, 525
TatI	WGTACW	2 cut(s)	521, 536
TfiI	GAWTC	2 cut(s)	295, 381
Tru1I	TTAA	2 cut(s)	408, 497
Tru9I	TTAA	2 cut(s)	408, 497
TscAI	CASTG	3 cut(s)	193, 265, 324
TspDTI	ATGAA	4 cut(s)	345, 417, 483, 495
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	3 cut(s)	193, 265, 324
VneI	GTGCAC	1 cut(s)	501
VpaK11BI	GGWCC	1 cut(s)	56
XmiI	GTMKAC	1 cut(s)	458
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.