Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002230

Physical Location & Seq

Genomic Coordinates Reverse (-)

12160928 .. 12165344

Gene Structure 4417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00227900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGATGCCAATGGACCAGATCTGTTCAACAACAAGAAGCAAGCAATGGAGGCTGTTGATGGCAGGCCAGCTTCAAGAGCTTCAAACTTGGCCGTTGCCCCGTCGGATAACACTTCTGGGTTTCAGACAGTTCCAGGGAAGTTCACTGACTGCCTCTTTGGACAAGAGCCTGGACGGACAGTCAACTTAGTTGATAGAAACATTCAGTCTGTTGGCAGTGGAACTACTAATTTTGGAAGAAAAGGGTTTCAGAATCAATATGGCAATGATCAATCAGTGGATCTGTCAATGTCCCACACCATCGAAGATCCTTCATCATGTCTAGGGTTTAGGGGTGGAATCAAGGAAGACTCTGATAATGCCGTTTTGGGAGACAATTATACAATTCCAATGTGTACAACCTATAACAAGAATGATGAAAACATCATTTCATTAAGTGCACCTTTGGGAGACAATTGTACAATTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas

Protein Analysis

156

Amino Acids

16.66

Weight (kDa)

4.51

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13660 AT5G13660 AT5G13660 AT5G13660 AT5G13660 AT5G13660 AT5G13660
fragaria_vesca	FvH4_7g21830 FvH4_7g21830 FvH4_7g21830
malus_domestica	MD01G1123100.v1.1 MD07G1192800.v1.1
prunus_persica	Prupe.2G230700_v2.0.a1
pyrus_communis	pycom01g15000 pycom07g18230
rosa_chinensis	RchiOBHm_Chr1g0366111 RchiOBHm_Chr7g0232731
rosa_laevigata	RLG00000017112 RLG00000027367
rosa_multiflora	Rmu_co7957917.1_g000001 Rmu_co8165832.1_g000001 Rmu_sc0003987.1_g000004 Rmu_sc0005795.1_g000008
rosa_roxburghii	Rroxscaffold_3G00227900 Rroxscaffold_4G00290490
rosa_rugosa	Rorug01G0133500.1 Rorug01G0327400 Rorug01G0327500 Rorug01G0327600
rosa_samantha	Rh1AG335600 Rh1BG296800 Rh1CG313000 Rh1DG328700 Rh2AG150700 Rh2AG150900 Rh2BG156400 Rh2DG156300 Rh2DG156500 Rh7AG431000 Rh7AG431100 Rh7CG449600 Rh7CG449700
rosa_wichuraiana	Rw1G029770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	288, 302
AcoI	YGGCCR	1 cut(s)	90
AfaI	GTAC	2 cut(s)	397, 460
AgsI	TTSAA	3 cut(s)	28, 75, 84
AhdI	GACNNNNNGTC	1 cut(s)	179
AjnI	CCWGG	2 cut(s)	133, 169
AluBI	AGCT	2 cut(s)	71, 80
AluI	AGCT	2 cut(s)	71, 80
Alw21I	GWGCWC	1 cut(s)	442
Alw26I	GTCTC	2 cut(s)	366, 444
Alw44I	GTGCAC	1 cut(s)	438
AlwI	GGATC	2 cut(s)	288, 302
AoxI	GGCC	2 cut(s)	65, 90
ApaLI	GTGCAC	1 cut(s)	438
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
AspS9I	GGNCC	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	14
BaeGI	GKGCMC	1 cut(s)	442
BbsI	GAAGAC	1 cut(s)	354
Bbv12I	GWGCWC	1 cut(s)	442
BccI	CCATC	2 cut(s)	53, 308
BceAI	ACGGC	2 cut(s)	77, 347
BciT130I	CCWGG	2 cut(s)	135, 171
BclI	TGATCA	1 cut(s)	268
BcoDI	GTCTC	2 cut(s)	366, 444
BfaI	CTAG	1 cut(s)	323
BglII	AGATCT	1 cut(s)	19
Bme1390I	CCNGG	2 cut(s)	135, 171
Bme18I	GGWCC	1 cut(s)	14
BmeRI	GACNNNNNGTC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	14
BmrFI	CCNGG	2 cut(s)	135, 171
BpiI	GAAGAC	1 cut(s)	354
BsaJI	CCNNGG	1 cut(s)	134
Bse3DI	GCAATG	2 cut(s)	51, 271
BseBI	CCWGG	2 cut(s)	135, 171
BseDI	CCNNGG	1 cut(s)	134
BseGI	GGATG	1 cut(s)	10
BseMI	GCAATG	2 cut(s)	51, 271
BseSI	GKGCMC	1 cut(s)	442
BshFI	GGCC	2 cut(s)	67, 92
BsiHKAI	GWGCWC	1 cut(s)	442
BslFI	GGGAC	1 cut(s)	277
BsmAI	GTCTC	2 cut(s)	366, 444
BsmFI	GGGAC	1 cut(s)	277
BsnI	GGCC	2 cut(s)	67, 92
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp1407I	TGTACA	2 cut(s)	395, 458
Bsp143I	GATC	4 cut(s)	19, 268, 280, 307
BspANI	GGCC	2 cut(s)	67, 92
BspPI	GGATC	2 cut(s)	288, 302
BsrDI	GCAATG	2 cut(s)	51, 271
BsrGI	TGTACA	2 cut(s)	395, 458
BssECI	CCNNGG	1 cut(s)	134
BssMI	GATC	4 cut(s)	19, 268, 280, 307
Bst2UI	CCWGG	2 cut(s)	135, 171
Bst4CI	ACNGT	2 cut(s)	130, 181
BstAUI	TGTACA	2 cut(s)	395, 458
BstC8I	GCNNGC	3 cut(s)	42, 65, 69
BstDEI	CTNAG	1 cut(s)	187
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	4 cut(s)	22, 271, 283, 310
BstMAI	GTCTC	2 cut(s)	366, 444
BstMBI	GATC	4 cut(s)	19, 268, 280, 307
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 77
BstNI	CCWGG	2 cut(s)	135, 171
BstSCI	CCNGG	2 cut(s)	133, 169
BstSLI	GKGCMC	1 cut(s)	442
BstV2I	GAAGAC	1 cut(s)	354
BstX2I	RGATCY	3 cut(s)	19, 280, 307
BstYI	RGATCY	3 cut(s)	19, 280, 307
BsuRI	GGCC	2 cut(s)	67, 92
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	223
BtsIMutI	CAGTG	3 cut(s)	144, 223, 282
Cac8I	GCNNGC	3 cut(s)	42, 65, 69
Cfr13I	GGNCC	1 cut(s)	14
Csp6I	GTAC	2 cut(s)	396, 459
CviAII	CATG	1 cut(s)	318
CviJI	RGCY	6 cut(s)	53, 67, 71, 80, 92, 169
CviKI_1	RGCY	6 cut(s)	53, 67, 71, 80, 92, 169
CviQI	GTAC	2 cut(s)	396, 459
DdeI	CTNAG	1 cut(s)	187
DpnI	GATC	4 cut(s)	21, 270, 282, 309
DpnII	GATC	4 cut(s)	19, 268, 280, 307
DriI	GACNNNNNGTC	1 cut(s)	179
EaeI	YGGCCR	1 cut(s)	90
Eam1105I	GACNNNNNGTC	1 cut(s)	179
Eco47I	GGWCC	1 cut(s)	14
EcoRII	CCWGG	2 cut(s)	133, 169
FaeI	CATG	1 cut(s)	321
FaiI	YATR	5 cut(s)	261, 319, 381, 405, 469
FalI	AAGNNNNNCTT	2 cut(s)	427, 459
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	1 cut(s)	317
FbaI	TGATCA	1 cut(s)	268
FokI	GGATG	1 cut(s)	17
FspBI	CTAG	1 cut(s)	323
HaeIII	GGCC	2 cut(s)	67, 92
Hin1II	CATG	1 cut(s)	321
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	3 cut(s)	253, 339, 350
Hpy166II	GTNNAC	4 cut(s)	144, 184, 396, 440
Hpy188I	TCNGA	4 cut(s)	106, 126, 252, 355
Hpy188III	TCNNGA	1 cut(s)	75
Hpy8I	GTNNAC	4 cut(s)	144, 184, 396, 440
Hpy99I	CGWCG	1 cut(s)	106
HpyAV	CCTTC	1 cut(s)	321
HpyCH4III	ACNGT	2 cut(s)	130, 181
HpyCH4V	TGCA	1 cut(s)	440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 77
HpyF3I	CTNAG	1 cut(s)	187
Hsp92II	CATG	1 cut(s)	321
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	4 cut(s)	19, 268, 280, 307
LpnPI	CCDG	8 cut(s)	30, 49, 81, 102, 120, 147, 156, 183
MaeI	CTAG	1 cut(s)	323
MalI	GATC	4 cut(s)	21, 270, 282, 309
MboI	GATC	4 cut(s)	19, 268, 280, 307
MboII	GAAGA	3 cut(s)	249, 317, 359
MfeI	CAATTG	1 cut(s)	454
MflI	RGATCY	3 cut(s)	19, 280, 307
MhlI	GDGCHC	1 cut(s)	442
MluCI	AATT	5 cut(s)	229, 376, 384, 454, 462
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	2 cut(s)	43, 164
MseI	TTAA	1 cut(s)	434
MspR9I	CCNGG	2 cut(s)	135, 171
MunI	CAATTG	1 cut(s)	454
MvaI	CCWGG	2 cut(s)	135, 171
MwoI	GCNNNNNNNGC	2 cut(s)	50, 77
NdeII	GATC	4 cut(s)	19, 268, 280, 307
NlaIII	CATG	1 cut(s)	321
PfeI	GAWTC	2 cut(s)	253, 339
PleI	GAGTC	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	344
Psp6I	CCWGG	2 cut(s)	133, 169
PspGI	CCWGG	2 cut(s)	133, 169
PspPI	GGNCC	1 cut(s)	14
PsuI	RGATCY	3 cut(s)	19, 280, 307
RsaI	GTAC	2 cut(s)	397, 460
RsaNI	GTAC	2 cut(s)	396, 459
SaqAI	TTAA	1 cut(s)	434
Sau3AI	GATC	4 cut(s)	19, 268, 280, 307
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	2 cut(s)	135, 171
SduI	GDGCHC	1 cut(s)	442
SetI	ASST	4 cut(s)	73, 82, 404, 445
SinI	GGWCC	1 cut(s)	14
Sse9I	AATT	5 cut(s)	229, 376, 384, 454, 462
SspMI	CTAG	1 cut(s)	323
StyD4I	CCNGG	2 cut(s)	133, 169
TaaI	ACNGT	2 cut(s)	130, 181
TaqI	TCGA	1 cut(s)	303
TasI	AATT	5 cut(s)	229, 376, 384, 454, 462
TatI	WGTACW	2 cut(s)	395, 458
TfiI	GAWTC	2 cut(s)	253, 339
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TscAI	CASTG	3 cut(s)	151, 223, 282
TspDTI	ATGAA	3 cut(s)	303, 420, 432
TspGWI	ACGGA	1 cut(s)	190
TspRI	CASTG	3 cut(s)	151, 223, 282
VneI	GTGCAC	1 cut(s)	438
VpaK11BI	GGWCC	1 cut(s)	14
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.