Rorug01G0327600

TPL-binding domain in jasmonate signalling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002230
Physical Location & Seq
Reverse (-)
44693759 .. 44694241
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0327600.1

Sequence Viewer

Length: 483 bp
ATGGCTGGTAATCCTGGTATTGAGAATGAAGAGTACTTCACACCACCACGTAGCTTCTCATCATCATTGAAAATGCCGAAGAATCTCTCAAGATCTGATGATAATGAAAAGACTCATAAGCTTCGGAGAAACAAGTACTCCAAAGCAATTTTGAAGCACTTAAACAAGGCTAAAGCCATCAAAAAGCCAATAAACCTCGCAAGACGTCATGAGCTTCCTGGGGGACCACTTACAATTTTACAACACGTAAAAGGTTGTGTACTCATCAAAAAGCCAACAACAATTGGTGATGACAAAGAAACTGGCAGCAACAACACCCCTACTCTTTTCGAAGACAAATACTCAGAAGCGATTTTGCAGCACTTTAACAAGGCTTATCTAGCCATCAAGAAGTCAATAAGTAAGGCAAGATGTCATGAGGTTCCTGGAATTAAGCGCTCCAAGGAGATTTTACAACACAGTCAACACTTAAAACAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas

Protein Analysis

160

Amino Acids

18.15

Weight (kDa)

9.91

Isoelectric Point (pI)

63.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 208
AcyI GRCGYC 1 cut(s) 205
AfaI GTAC 3 cut(s) 35, 137, 261
AfeI AGCGCT 1 cut(s) 437
AflIII ACRYGT 1 cut(s) 244
AgsI TTSAA 2 cut(s) 70, 154
AjnI CCWGG 3 cut(s) 13, 217, 424
AluBI AGCT 3 cut(s) 54, 121, 214
AluI AGCT 3 cut(s) 54, 121, 214
Aor51HI AGCGCT 1 cut(s) 437
ApeKI GCWGC 2 cut(s) 306, 358
AspLEI GCGC 1 cut(s) 438
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 299
AsuII TTCGAA 1 cut(s) 330
AvaII GGWCC 1 cut(s) 224
BbsI GAAGAC 1 cut(s) 339
BbvI GCAGC 2 cut(s) 318, 370
BccI CCATC 2 cut(s) 185, 392
BciT130I CCWGG 3 cut(s) 15, 219, 426
BfaI CTAG 2 cut(s) 380, 481
BfoI RGCGCY 1 cut(s) 439
BglII AGATCT 1 cut(s) 92
BisI GCNGC 2 cut(s) 307, 359
BlsI GCNGC 2 cut(s) 308, 360
BmcAI AGTACT 2 cut(s) 35, 137
Bme1390I CCNGG 3 cut(s) 15, 219, 426
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 2 cut(s) 225, 423
BmrFI CCNGG 3 cut(s) 15, 219, 426
BpiI GAAGAC 1 cut(s) 339
Bpu14I TTCGAA 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 73
BsaAI YACGTR 2 cut(s) 50, 247
BsaHI GRCGYC 1 cut(s) 205
BsaJI CCNNGG 2 cut(s) 218, 441
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bse1I ACTGG 1 cut(s) 307
BseBI CCWGG 3 cut(s) 15, 219, 426
BseDI CCNNGG 2 cut(s) 218, 441
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 1 cut(s) 307
BseXI GCAGC 2 cut(s) 318, 370
BslFI GGGAC 1 cut(s) 237
BsmFI GGGAC 1 cut(s) 237
Bsp119I TTCGAA 1 cut(s) 330
Bsp143I GATC 1 cut(s) 92
BspCNI CTCAG 1 cut(s) 356
BspHI TCATGA 2 cut(s) 208, 415
BspLI GGNNCC 2 cut(s) 225, 423
BspT104I TTCGAA 1 cut(s) 330
BsrI ACTGG 1 cut(s) 307
BssECI CCNNGG 2 cut(s) 218, 441
BssMI GATC 1 cut(s) 92
BssNI GRCGYC 1 cut(s) 205
BssT1I CCWWGG 1 cut(s) 441
Bst2UI CCWGG 3 cut(s) 15, 219, 426
Bst4CI ACNGT 1 cut(s) 461
Bst6I CTCTTC 1 cut(s) 24
BstACI GRCGYC 1 cut(s) 205
BstBAI YACGTR 2 cut(s) 50, 247
BstBI TTCGAA 1 cut(s) 330
BstDEI CTNAG 1 cut(s) 343
BstH2I RGCGCY 1 cut(s) 439
BstHHI GCGC 1 cut(s) 438
BstKTI GATC 1 cut(s) 95
BstMBI GATC 1 cut(s) 92
BstMWI GCNNNNNNNGC 1 cut(s) 380
BstNI CCWGG 3 cut(s) 15, 219, 426
BstSCI CCNGG 3 cut(s) 13, 217, 424
BstV1I GCAGC 2 cut(s) 318, 370
BstV2I GAAGAC 1 cut(s) 339
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
CciI TCATGA 2 cut(s) 208, 415
CfoI GCGC 1 cut(s) 438
Cfr13I GGNCC 1 cut(s) 224
Csp6I GTAC 3 cut(s) 34, 136, 260
CviAII CATG 2 cut(s) 209, 416
CviQI GTAC 3 cut(s) 34, 136, 260
DdeI CTNAG 1 cut(s) 343
DpnI GATC 1 cut(s) 94
DpnII GATC 1 cut(s) 92
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 441
Eco47I GGWCC 1 cut(s) 224
Eco47III AGCGCT 1 cut(s) 437
EcoRII CCWGG 3 cut(s) 13, 217, 424
EcoT14I CCWWGG 1 cut(s) 441
ErhI CCWWGG 1 cut(s) 441
FaeI CATG 2 cut(s) 212, 419
FaiI YATR 3 cut(s) 117, 210, 417
FaqI GGGAC 1 cut(s) 237
FatI CATG 2 cut(s) 208, 415
Fnu4HI GCNGC 2 cut(s) 307, 359
Fsp4HI GCNGC 2 cut(s) 307, 359
FspBI CTAG 2 cut(s) 380, 481
GlaI GCGC 1 cut(s) 437
GluI GCNGC 2 cut(s) 307, 359
HaeII RGCGCY 1 cut(s) 439
HhaI GCGC 1 cut(s) 438
Hin1I GRCGYC 1 cut(s) 205
Hin1II CATG 2 cut(s) 212, 419
Hin6I GCGC 1 cut(s) 436
HinP1I GCGC 1 cut(s) 436
HincII GTYRAC 1 cut(s) 464
HindII GTYRAC 1 cut(s) 464
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 2 cut(s) 82, 112
HphI GGTGA 1 cut(s) 299
Hpy166II GTNNAC 2 cut(s) 260, 464
Hpy188I TCNGA 3 cut(s) 97, 126, 346
Hpy188III TCNNGA 4 cut(s) 90, 209, 388, 416
Hpy8I GTNNAC 2 cut(s) 260, 464
HpyCH4III ACNGT 1 cut(s) 461
HpyCH4IV ACGT 3 cut(s) 49, 205, 246
HpyCH4V TGCA 1 cut(s) 358
HpyF10VI GCNNNNNNNGC 1 cut(s) 380
HpyF3I CTNAG 1 cut(s) 343
HpySE526I ACGT 3 cut(s) 49, 205, 246
Hsp92I GRCGYC 1 cut(s) 205
Hsp92II CATG 2 cut(s) 212, 419
HspAI GCGC 1 cut(s) 436
Kzo9I GATC 1 cut(s) 92
LmnI GCTCC 1 cut(s) 443
LpnPI CCDG 6 cut(s) 27, 204, 231, 288, 411, 438
Lsp1109I GCAGC 2 cut(s) 318, 370
MaeI CTAG 2 cut(s) 380, 481
MaeII ACGT 3 cut(s) 49, 205, 246
MalI GATC 1 cut(s) 94
MboI GATC 1 cut(s) 92
MboII GAAGA 3 cut(s) 41, 91, 344
MfeI CAATTG 1 cut(s) 282
MflI RGATCY 1 cut(s) 92
MluCI AATT 4 cut(s) 147, 234, 282, 429
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 2 cut(s) 206, 412
MseI TTAA 4 cut(s) 161, 366, 432, 470
MspR9I CCNGG 3 cut(s) 15, 219, 426
MunI CAATTG 1 cut(s) 282
MvaI CCWGG 3 cut(s) 15, 219, 426
MwoI GCNNNNNNNGC 1 cut(s) 380
NdeII GATC 1 cut(s) 92
NlaIII CATG 2 cut(s) 212, 419
NlaIV GGNNCC 2 cut(s) 225, 423
NspV TTCGAA 1 cut(s) 330
PagI TCATGA 2 cut(s) 208, 415
PfeI GAWTC 1 cut(s) 82
PfoI TCCNGGA 1 cut(s) 424
PkrI GCNGC 2 cut(s) 308, 360
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
Ppu21I YACGTR 2 cut(s) 50, 247
Psp6I CCWGG 3 cut(s) 13, 217, 424
PspGI CCWGG 3 cut(s) 13, 217, 424
PspN4I GGNNCC 2 cut(s) 225, 423
PspPI GGNCC 1 cut(s) 224
PsuI RGATCY 1 cut(s) 92
RsaI GTAC 3 cut(s) 35, 137, 261
RsaNI GTAC 3 cut(s) 34, 136, 260
SaqAI TTAA 4 cut(s) 161, 366, 432, 470
SatI GCNGC 2 cut(s) 307, 359
Sau3AI GATC 1 cut(s) 92
Sau96I GGNCC 1 cut(s) 224
ScaI AGTACT 2 cut(s) 35, 137
SchI GAGTC 1 cut(s) 106
ScrFI CCNGG 3 cut(s) 15, 219, 426
SetI ASST 9 cut(s) 52, 56, 123, 198, 208, 216, 249, 256, 423
SfuI TTCGAA 1 cut(s) 330
SinI GGWCC 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
Sse9I AATT 4 cut(s) 147, 234, 282, 429
SspMI CTAG 2 cut(s) 380, 481
StyD4I CCNGG 3 cut(s) 13, 217, 424
StyI CCWWGG 1 cut(s) 441
TaaI ACNGT 1 cut(s) 461
TaiI ACGT 3 cut(s) 52, 208, 249
TaqI TCGA 1 cut(s) 330
TasI AATT 4 cut(s) 147, 234, 282, 429
TatI WGTACW 3 cut(s) 33, 135, 259
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 4 cut(s) 161, 366, 432, 470
Tru9I TTAA 4 cut(s) 161, 366, 432, 470
TseI GCWGC 2 cut(s) 306, 358
TspDTI ATGAA 2 cut(s) 42, 120
VpaK11BI GGWCC 1 cut(s) 224
XspI CTAG 2 cut(s) 380, 481
ZraI GACGTC 1 cut(s) 206
ZrmI AGTACT 2 cut(s) 35, 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.