Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002230

Physical Location & Seq

Genomic Coordinates Reverse (-)

56982207 .. 56986515

Gene Structure 4309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG335600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGTCTTTCCAACCCAAAAGCTTTTGGATTCCAAGAGATGCTAGCTGTCTAAATGATGGAGAGATGGGCTGTGATAATTCTTCCAGGGTGGAATCAAAGCGTGGTCACCCATGGTATATGGATGCCAATGGACCAGATCTGTTCAACAACAAGAAGCAAGCAATGGAGGCTGTTGATGGCAGGCCAGTGTCAAGAGCTCCAAACTTGGCCGTTGCCCCGTGGGATAGCACTTCTGGGTTTCAGACAGTTCCAGGGCAGTTCACTGACCGCCTTTTTGGACAAGAGCCTGGACGGACAGTTAACGTAGTTGATAGAAACATTCAGTCTCTTGGCAGTGGAACTATAAATTTTGGAAGAAAAGGGTTTCAGAATCAATATGGCAATGATCAGTCAGTGGATTTGTCAATGTCCCACACCATCGAAGATCCTTCATCATGTCTCAGTTTTGGTGGAATCAGAAAAGTGAAAGTCAATGAAGTTAAGGACTCTGATAATGCCGTGTCTGCATCTATGGGGCACTCCTACAGAAGGGGAGACAATAATACAATTTCAATGCATACTACCTATACCAAGAGTGATGAAAATATCATTTCATTAAGTCCACCTTACAATGCTGACGAGAATGCCATCTCATTAGCGACTACTTTTAATAAGGCAGATGACAATTTCATCTCAGTTGGTCATACTTTTGGCAAGGGAGATGACACTTTCATATCGATGGCTCATAGTTACAGCAAGGGTGACACTCGTATGTTATCAATGGGTCAGCCCTTTGAGAAGGAGAATAGAAGTTTTATGTCAATTGGTCAGTCATATGAAAAGGGAGATGGCAGTTTCATATCATTAGGTAACTCGTACAACAAAGTGAATGAGGATTTCATTTCTATGGGTCCAGTATATGGTAGAGGAGACGATAATTTGATCTCAGTGGCTCCGACCTATGATAAGCATGCTGATAACACTATATCAATGGGTCTGACCTATGACAAGGCTGATTCGAATATTTTGCCAATGGGTCCTCCTTATGATAAATCAGATAGAGATCTACCTATGAGTCACAGTTACAATAAGAATGAGAGCAATACCATATCTTTTGGTGGTTTCCATGATGAATCTGAGACAAACCCTTCTGGTGGGATCATCAGTAGCTGTGGTTTGTTGACTTGTAATCAGAACACAACAGCTCACGCATCGGAAGAATCTGGTGTGAGAGGTTCTGATCATCCTGTTGAGACGAAGATGGATGCACATGTAGATGACACTGTGAAAGTTGACTCCAAAACTGTTAATATTCCCAGAGTAAAAGAGCCAAAGACTAAGAAAGCTCCTCCAAACAACTTTCCTTCAAATGTCAAAAGTTTGTTGTCAACTGGTATGTTTGATGGTATTCCTGTGAAGTATTCTTCCTGGTCACGGGAGGTAAGCTTGTTTACCCTTGAATACTCTGATTTTTTGTTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas

Protein Analysis

487

Amino Acids

53.42

Weight (kDa)

5.28

Isoelectric Point (pI)

40.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13660 AT5G13660 AT5G13660 AT5G13660 AT5G13660 AT5G13660 AT5G13660
fragaria_vesca	FvH4_7g21830 FvH4_7g21830 FvH4_7g21830
malus_domestica	MD01G1123100.v1.1 MD07G1192800.v1.1
prunus_persica	Prupe.2G230700_v2.0.a1
pyrus_communis	pycom01g15000 pycom07g18230
rosa_chinensis	RchiOBHm_Chr1g0366111 RchiOBHm_Chr7g0232731
rosa_laevigata	RLG00000017112 RLG00000027367
rosa_multiflora	Rmu_co7957917.1_g000001 Rmu_co8165832.1_g000001 Rmu_sc0003987.1_g000004 Rmu_sc0005795.1_g000008
rosa_roxburghii	Rroxscaffold_3G00227900 Rroxscaffold_4G00290490
rosa_rugosa	Rorug01G0133500.1 Rorug01G0327400 Rorug01G0327500 Rorug01G0327600
rosa_samantha	Rh1AG335600 Rh1BG296800 Rh1CG313000 Rh1DG328700 Rh2AG150700 Rh2AG150900 Rh2BG156400 Rh2DG156300 Rh2DG156500 Rh7AG431000 Rh7AG431100 Rh7CG449600 Rh7CG449700
rosa_wichuraiana	Rw1G029770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	899
AciI	CCGC	1 cut(s)	268
AclWI	GGATC	2 cut(s)	419, 1145
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	346
AfaI	GTAC	1 cut(s)	857
AfiI	CCNNNNNNNGG	4 cut(s)	528, 899, 1133, 1413
AflIII	ACRYGT	1 cut(s)	1249
AgsI	TTSAA	4 cut(s)	145, 552, 1347, 1439
AjnI	CCWGG	4 cut(s)	83, 250, 286, 1406
AluBI	AGCT	7 cut(s)	21, 45, 197, 1149, 1184, 1325, 1425
AluI	AGCT	7 cut(s)	21, 45, 197, 1149, 1184, 1325, 1425
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	6 cut(s)	330, 443, 528, 903, 1112, 1226
AlwI	GGATC	2 cut(s)	419, 1145
AlwNI	CAGNNNCTG	1 cut(s)	1149
AoxI	GGCC	2 cut(s)	182, 207
ApoI	RAATTY	1 cut(s)	346
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
AspS9I	GGNCC	3 cut(s)	131, 890, 1016
AsuHPI	GGTGA	2 cut(s)	98, 752
AsuII	TTCGAA	1 cut(s)	998
AsuNHI	GCTAGC	1 cut(s)	41
AvaII	GGWCC	3 cut(s)	131, 890, 1016
BaeGI	GKGCMC	1 cut(s)	519
BanII	GRGCYC	1 cut(s)	199
Bbv12I	GWGCWC	1 cut(s)	199
BccI	CCATC	9 cut(s)	50, 58, 170, 425, 635, 712, 821, 1234, 1376
BceAI	ACGGC	2 cut(s)	194, 482
BcgI	CGANNNNNNTGC	2 cut(s)	988, 1022
BciT130I	CCWGG	4 cut(s)	85, 252, 288, 1408
BclI	TGATCA	2 cut(s)	385, 1219
BcoDI	GTCTC	6 cut(s)	330, 443, 528, 903, 1112, 1226
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	1 cut(s)	523
BglII	AGATCT	2 cut(s)	136, 1042
Bme1390I	CCNGG	4 cut(s)	85, 252, 288, 1408
Bme18I	GGWCC	3 cut(s)	131, 890, 1016
BmgT120I	GGNCC	3 cut(s)	131, 890, 1016
BmiI	GGNNCC	3 cut(s)	891, 933, 1017
BmrFI	CCNGG	4 cut(s)	85, 252, 288, 1408
BmsI	GCATC	5 cut(s)	28, 112, 515, 1199, 1234
BmtI	GCTAGC	1 cut(s)	45
Bpu14I	TTCGAA	1 cut(s)	998
Bsa29I	ATCGAT	1 cut(s)	716
BsaBI	GATNNNNATC	1 cut(s)	1041
BsaJI	CCNNGG	4 cut(s)	84, 110, 218, 251
Bsc4I	CCNNNNNNNGG	4 cut(s)	528, 899, 1133, 1413
Bse1I	ACTGG	3 cut(s)	185, 893, 1375
Bse3DI	GCAATG	2 cut(s)	168, 388
Bse8I	GATNNNNATC	1 cut(s)	1041
BseBI	CCWGG	4 cut(s)	85, 252, 288, 1408
BseCI	ATCGAT	1 cut(s)	716
BseDI	CCNNGG	4 cut(s)	84, 110, 218, 251
BseGI	GGATG	3 cut(s)	127, 1222, 1249
BseJI	GATNNNNATC	1 cut(s)	1041
BseLI	CCNNNNNNNGG	4 cut(s)	528, 899, 1133, 1413
BseMI	GCAATG	2 cut(s)	168, 388
BseMII	CTCAG	4 cut(s)	454, 687, 939, 1107
BseNI	ACTGG	3 cut(s)	185, 893, 1375
BseRI	GAGGAG	2 cut(s)	921, 1317
BseSI	GKGCMC	1 cut(s)	519
BshFI	GGCC	2 cut(s)	184, 209
BshVI	ATCGAT	1 cut(s)	716
BsiHKAI	GWGCWC	1 cut(s)	199
BslFI	GGGAC	1 cut(s)	394
BslI	CCNNNNNNNGG	4 cut(s)	528, 899, 1133, 1413
BsmAI	GTCTC	6 cut(s)	330, 443, 528, 903, 1112, 1226
BsmBI	CGTCTC	2 cut(s)	903, 1226
BsmFI	GGGAC	1 cut(s)	394
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	2 cut(s)	184, 209
Bsp119I	TTCGAA	1 cut(s)	998
Bsp1286I	GDGCHC	2 cut(s)	199, 519
Bsp143I	GATC	7 cut(s)	136, 385, 424, 921, 1042, 1137, 1219
Bsp19I	CCATGG	1 cut(s)	110
BspACI	CCGC	1 cut(s)	268
BspANI	GGCC	2 cut(s)	184, 209
BspCNI	CTCAG	4 cut(s)	453, 686, 938, 1108
BspDI	ATCGAT	1 cut(s)	716
BspLI	GGNNCC	3 cut(s)	891, 933, 1017
BspOI	GCTAGC	1 cut(s)	45
BspPI	GGATC	2 cut(s)	419, 1145
BspT104I	TTCGAA	1 cut(s)	998
BsrDI	GCAATG	2 cut(s)	168, 388
BsrI	ACTGG	3 cut(s)	185, 893, 1375
BssECI	CCNNGG	4 cut(s)	84, 110, 218, 251
BssMI	GATC	7 cut(s)	136, 385, 424, 921, 1042, 1137, 1219
BssT1I	CCWWGG	1 cut(s)	110
Bst2UI	CCWGG	4 cut(s)	85, 252, 288, 1408
Bst4CI	ACNGT	5 cut(s)	247, 298, 1061, 1264, 1285
BstBI	TTCGAA	1 cut(s)	998
BstC8I	GCNNGC	4 cut(s)	43, 159, 182, 951
BstDEI	CTNAG	5 cut(s)	440, 673, 925, 1116, 1317
BstDSI	CCRYGG	2 cut(s)	110, 218
BstEII	GGTNACC	1 cut(s)	104
BstENI	CCTNNNNNAGG	1 cut(s)	526
BstF5I	GGATG	3 cut(s)	127, 1222, 1249
BstKTI	GATC	7 cut(s)	139, 388, 427, 924, 1045, 1140, 1222
BstMAI	GTCTC	6 cut(s)	330, 443, 528, 903, 1112, 1226
BstMBI	GATC	7 cut(s)	136, 385, 424, 921, 1042, 1137, 1219
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 503
BstNI	CCWGG	4 cut(s)	85, 252, 288, 1408
BstNSI	RCATGY	2 cut(s)	953, 1253
BstPI	GGTNACC	1 cut(s)	104
BstSCI	CCNGG	4 cut(s)	83, 250, 286, 1406
BstSFI	CTRYAG	1 cut(s)	523
BstSLI	GKGCMC	1 cut(s)	519
BstX2I	RGATCY	3 cut(s)	136, 424, 1042
BstYI	RGATCY	3 cut(s)	136, 424, 1042
Bsu15I	ATCGAT	1 cut(s)	716
BsuRI	GGCC	2 cut(s)	184, 209
BsuTUI	ATCGAT	1 cut(s)	716
BtgI	CCRYGG	2 cut(s)	110, 218
BtsCI	GGATG	3 cut(s)	127, 1222, 1249
BtsI	GCAGTG	1 cut(s)	340
BtsIMutI	CAGTG	6 cut(s)	192, 261, 340, 399, 933, 1260
Cac8I	GCNNGC	4 cut(s)	43, 159, 182, 951
CaiI	CAGNNNCTG	1 cut(s)	1149
Cfr13I	GGNCC	3 cut(s)	131, 890, 1016
ClaI	ATCGAT	1 cut(s)	716
Csp6I	GTAC	1 cut(s)	856
CviAII	CATG	5 cut(s)	111, 435, 950, 1106, 1250
CviQI	GTAC	1 cut(s)	856
DdeI	CTNAG	5 cut(s)	440, 673, 925, 1116, 1317
DpnI	GATC	7 cut(s)	138, 387, 426, 923, 1044, 1139, 1221
DpnII	GATC	7 cut(s)	136, 385, 424, 921, 1042, 1137, 1219
EaeI	YGGCCR	1 cut(s)	207
Ecl136II	GAGCTC	1 cut(s)	197
Eco130I	CCWWGG	1 cut(s)	110
Eco24I	GRGCYC	1 cut(s)	199
Eco47I	GGWCC	3 cut(s)	131, 890, 1016
Eco53kI	GAGCTC	1 cut(s)	197
Eco91I	GGTNACC	1 cut(s)	104
EcoICRI	GAGCTC	1 cut(s)	197
EcoNI	CCTNNNNNAGG	1 cut(s)	526
EcoO109I	RGGNCCY	1 cut(s)	1016
EcoO65I	GGTNACC	1 cut(s)	104
EcoRII	CCWGG	4 cut(s)	83, 250, 286, 1406
EcoT14I	CCWWGG	1 cut(s)	110
EcoT22I	ATGCAT	1 cut(s)	558
EcoT38I	GRGCYC	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	110
Esp3I	CGTCTC	2 cut(s)	903, 1226
FaeI	CATG	5 cut(s)	114, 438, 953, 1109, 1253
FalI	AAGNNNNNCTT	2 cut(s)	589, 621
FaqI	GGGAC	1 cut(s)	394
FatI	CATG	5 cut(s)	110, 434, 949, 1105, 1249
FauNDI	CATATG	1 cut(s)	814
FbaI	TGATCA	2 cut(s)	385, 1219
FokI	GGATG	3 cut(s)	134, 1209, 1256
FriOI	GRGCYC	1 cut(s)	199
FspBI	CTAG	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	184, 209
Hin1II	CATG	5 cut(s)	114, 438, 953, 1109, 1253
HincII	GTYRAC	4 cut(s)	301, 1161, 1273, 1368
HindII	GTYRAC	4 cut(s)	301, 1161, 1273, 1368
HindIII	AAGCTT	2 cut(s)	19, 1423
HpaI	GTTAAC	1 cut(s)	301
HphI	GGTGA	2 cut(s)	98, 752
Hpy166II	GTNNAC	7 cut(s)	261, 301, 602, 1161, 1273, 1368, 1431
Hpy188III	TCNNGA	1 cut(s)	192
Hpy8I	GTNNAC	7 cut(s)	261, 301, 602, 1161, 1273, 1368, 1431
HpyAV	CCTTC	5 cut(s)	438, 522, 772, 1137, 1353
HpyCH4III	ACNGT	5 cut(s)	247, 298, 1061, 1264, 1285
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	3 cut(s)	506, 556, 1247
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 503
HpyF3I	CTNAG	5 cut(s)	440, 673, 925, 1116, 1317
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	5 cut(s)	114, 438, 953, 1109, 1253
Ksp22I	TGATCA	2 cut(s)	385, 1219
KspAI	GTTAAC	1 cut(s)	301
Kzo9I	GATC	7 cut(s)	136, 385, 424, 921, 1042, 1137, 1219
LmnI	GCTCC	3 cut(s)	202, 937, 1330
LweI	GCATC	5 cut(s)	28, 112, 515, 1199, 1234
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	7 cut(s)	104, 728, 740, 848, 1055, 1061, 1410
MalI	GATC	7 cut(s)	138, 387, 426, 923, 1044, 1139, 1221
MboI	GATC	7 cut(s)	136, 385, 424, 921, 1042, 1137, 1219
MboII	GAAGA	6 cut(s)	72, 366, 434, 1208, 1249, 1395
MfeI	CAATTG	1 cut(s)	801
MflI	RGATCY	3 cut(s)	136, 424, 1042
MhlI	GDGCHC	2 cut(s)	199, 519
MluCI	AATT	6 cut(s)	76, 346, 546, 664, 801, 916
MlyI	GAGTC	3 cut(s)	479, 1063, 1268
MmeI	TCCRAC	2 cut(s)	34, 959
MnlI	CCTC	7 cut(s)	160, 865, 899, 1029, 1205, 1338, 1411
Mph1103I	ATGCAT	1 cut(s)	558
MseI	TTAA	5 cut(s)	300, 480, 596, 648, 1287
MslI	CAYNNNNRTG	4 cut(s)	716, 749, 884, 1254
MspR9I	CCNGG	4 cut(s)	85, 252, 288, 1408
MunI	CAATTG	1 cut(s)	801
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	4 cut(s)	85, 252, 288, 1408
MwoI	GCNNNNNNNGC	2 cut(s)	167, 503
NcoI	CCATGG	1 cut(s)	110
NdeI	CATATG	1 cut(s)	814
NdeII	GATC	7 cut(s)	136, 385, 424, 921, 1042, 1137, 1219
NheI	GCTAGC	1 cut(s)	41
NlaIII	CATG	5 cut(s)	114, 438, 953, 1109, 1253
NlaIV	GGNNCC	3 cut(s)	891, 933, 1017
NmuCI	GTSAC	4 cut(s)	104, 740, 1055, 1410
NsiI	ATGCAT	1 cut(s)	558
NspI	RCATGY	2 cut(s)	953, 1253
NspV	TTCGAA	1 cut(s)	998
PaeI	GCATGC	1 cut(s)	953
PciI	ACATGT	1 cut(s)	1249
PctI	GAATGC	1 cut(s)	628
PfeI	GAWTC	7 cut(s)	28, 92, 370, 453, 995, 1112, 1199
PflMI	CCANNNNNTGG	1 cut(s)	899
PleI	GAGTC	3 cut(s)	479, 1062, 1268
PpsI	GAGTC	3 cut(s)	479, 1062, 1268
PpuMI	RGGWCCY	1 cut(s)	1016
PscI	ACATGT	1 cut(s)	1249
Psp124BI	GAGCTC	1 cut(s)	199
Psp5II	RGGWCCY	1 cut(s)	1016
Psp6I	CCWGG	4 cut(s)	83, 250, 286, 1406
PspEI	GGTNACC	1 cut(s)	104
PspGI	CCWGG	4 cut(s)	83, 250, 286, 1406
PspN4I	GGNNCC	3 cut(s)	891, 933, 1017
PspPI	GGNCC	3 cut(s)	131, 890, 1016
PspPPI	RGGWCCY	1 cut(s)	1016
PstNI	CAGNNNCTG	1 cut(s)	1149
PsuI	RGATCY	3 cut(s)	136, 424, 1042
RsaI	GTAC	1 cut(s)	857
RsaNI	GTAC	1 cut(s)	856
RseI	CAYNNNNRTG	4 cut(s)	716, 749, 884, 1254
SacI	GAGCTC	1 cut(s)	199
SaqAI	TTAA	5 cut(s)	300, 480, 596, 648, 1287
Sau3AI	GATC	7 cut(s)	136, 385, 424, 921, 1042, 1137, 1219
Sau96I	GGNCC	3 cut(s)	131, 890, 1016
SchI	GAGTC	3 cut(s)	479, 1063, 1268
ScrFI	CCNGG	4 cut(s)	85, 252, 288, 1408
SduI	GDGCHC	2 cut(s)	199, 519
SfaNI	GCATC	5 cut(s)	28, 112, 515, 1199, 1234
SfcI	CTRYAG	1 cut(s)	523
SfuI	TTCGAA	1 cut(s)	998
SinI	GGWCC	3 cut(s)	131, 890, 1016
SmiMI	CAYNNNNRTG	4 cut(s)	716, 749, 884, 1254
SphI	GCATGC	1 cut(s)	953
Sse9I	AATT	6 cut(s)	76, 346, 546, 664, 801, 916
SsiI	CCGC	1 cut(s)	268
SspI	AATATT	2 cut(s)	1003, 1291
SspMI	CTAG	1 cut(s)	42
SstI	GAGCTC	1 cut(s)	199
StyD4I	CCNGG	4 cut(s)	83, 250, 286, 1406
StyI	CCWWGG	1 cut(s)	110
TaaI	ACNGT	5 cut(s)	247, 298, 1061, 1264, 1285
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	3 cut(s)	420, 716, 998
TasI	AATT	6 cut(s)	76, 346, 546, 664, 801, 916
TfiI	GAWTC	7 cut(s)	28, 92, 370, 453, 995, 1112, 1199
Tru1I	TTAA	5 cut(s)	300, 480, 596, 648, 1287
Tru9I	TTAA	5 cut(s)	300, 480, 596, 648, 1287
TscAI	CASTG	6 cut(s)	192, 268, 340, 399, 933, 1267
TseFI	GTSAC	4 cut(s)	104, 740, 1055, 1410
Tsp45I	GTSAC	4 cut(s)	104, 740, 1055, 1410
TspGWI	ACGGA	1 cut(s)	307
TspRI	CASTG	6 cut(s)	192, 268, 340, 399, 933, 1267
Van91I	CCANNNNNTGG	1 cut(s)	899
VpaK11BI	GGWCC	3 cut(s)	131, 890, 1016
XagI	CCTNNNNNAGG	1 cut(s)	526
XapI	RAATTY	1 cut(s)	346
XceI	RCATGY	2 cut(s)	953, 1253
XspI	CTAG	1 cut(s)	42
Zsp2I	ATGCAT	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.