Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005795.1

Orthogroup ID

OG0002230

Physical Location & Seq

Genomic Coordinates Forward (+)

49444 .. 52577

Gene Structure 3134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005795.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atgggctgtgataattcttccagggtagaatcaaagcgtggtcacccatggtatatggatgccaatggaccagatctgttcaacaacaagaagcaagcaatggaggctgttgatggtaggccagcttcaagagcttcaaacttggccgttgccccgtcggataacacttctgggtttcagacagttccagggaagttcactgactgcctctttggacaagagcctggacggacagtcaacttagttgatagaaacattcagtctgttggcagtggaactactaattttggaagaaaagggtttcagaatcaatatggcagtgatcagtcaaacacagcagctcatgcatcagaagaatctggtgtgagagattctgatcatcctgatgagtcgaagatagatgcacatgtagatgacgctgtgaaagttgattccaaaactgttaatattcccaaagtaaaagagccaaagactaagaaagctccaccaaacaactttctttcgtattttccttgtgttgacttgttatatttttcacagaaaaacctagatggaattatcaaagggactgggtatctatgctcttatgctgactgcaatcactcaaagcgtcttaatgcttacgagtttgagcgccatgcttgtgccaagaccaaacatcccaataatcgcatctactttgagaatggaaagaccatccatgcagtagttgaagagctgaagaacactcctcaggacatgctctttgatgccatccaaaatgtgacagggtctcaggttaataagaagaactcccgcgtctggatagcatcattccaagccgccagcgtgaccttcagcgtggtctctctcaccgctttgatttgcttctggtgtatggtggaaggagcagtggtggctattgtggttgaaagggaaaattcagaagcatggtccatacacttcgacttcaagctgctcgcagctgtttatggggctcttctatcgggggctgtatattatgtcatggggctggttgtgatgaagaagggactagttttctactctgtctttaaccccttggccaccctgcttgtggcgattttgggatcattttttctggcagaacaattgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas

Protein Analysis

371

Amino Acids

40.8

Weight (kDa)

7.1

Isoelectric Point (pI)

27.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13660 AT5G13660 AT5G13660 AT5G13660 AT5G13660 AT5G13660 AT5G13660
fragaria_vesca	FvH4_7g21830 FvH4_7g21830 FvH4_7g21830
malus_domestica	MD01G1123100.v1.1 MD07G1192800.v1.1
prunus_persica	Prupe.2G230700_v2.0.a1
pyrus_communis	pycom01g15000 pycom07g18230
rosa_chinensis	RchiOBHm_Chr1g0366111 RchiOBHm_Chr7g0232731
rosa_laevigata	RLG00000017112 RLG00000027367
rosa_multiflora	Rmu_co7957917.1_g000001 Rmu_co8165832.1_g000001 Rmu_sc0003987.1_g000004 Rmu_sc0005795.1_g000008
rosa_roxburghii	Rroxscaffold_3G00227900 Rroxscaffold_4G00290490
rosa_rugosa	Rorug01G0133500.1 Rorug01G0327400 Rorug01G0327500 Rorug01G0327600
rosa_samantha	Rh1AG335600 Rh1BG296800 Rh1CG313000 Rh1DG328700 Rh2AG150700 Rh2AG150900 Rh2BG156400 Rh2DG156300 Rh2DG156500 Rh7AG431000 Rh7AG431100 Rh7CG449600 Rh7CG449700
rosa_wichuraiana	Rw1G029770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	798
AciI	CCGC	3 cut(s)	796, 822, 855
AclWI	GGATC	1 cut(s)	1096
AcoI	YGGCCR	2 cut(s)	144, 1062
AcsI	RAATTY	1 cut(s)	919
AcuI	CTGAAG	2 cut(s)	740, 820
AfiI	CCNNNNNNNGG	2 cut(s)	801, 1075
AflIII	ACRYGT	1 cut(s)	406
AgsI	TTSAA	6 cut(s)	82, 129, 138, 713, 911, 952
AhdI	GACNNNNNGTC	1 cut(s)	233
AhlI	ACTAGT	1 cut(s)	1033
AjnI	CCWGG	3 cut(s)	20, 187, 223
AluBI	AGCT	7 cut(s)	125, 134, 341, 482, 718, 955, 965
AluI	AGCT	7 cut(s)	125, 134, 341, 482, 718, 955, 965
Alw26I	GTCTC	2 cut(s)	777, 850
AlwI	GGATC	1 cut(s)	1096
AoxI	GGCC	3 cut(s)	119, 144, 1062
ApeKI	GCWGC	3 cut(s)	338, 955, 962
ApoI	RAATTY	1 cut(s)	919
ArsI	GACNNNNNNTTYG	4 cut(s)	194, 226, 728, 760
AspLEI	GCGC	1 cut(s)	636
AspS9I	GGNCC	2 cut(s)	68, 933
AsuHPI	GGTGA	2 cut(s)	35, 844
AvaII	GGWCC	2 cut(s)	68, 933
AxyI	CCTNAGG	1 cut(s)	732
BalI	TGGCCA	1 cut(s)	1064
BanII	GRGCYC	1 cut(s)	979
BarI	GAAGNNNNNNTAC	2 cut(s)	109, 141
BbvI	GCAGC	3 cut(s)	350, 942, 974
BccI	CCATC	4 cut(s)	107, 545, 704, 761
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	3 cut(s)	22, 189, 225
BclI	TGATCA	2 cut(s)	322, 376
BcoDI	GTCTC	2 cut(s)	777, 850
BcuI	ACTAGT	1 cut(s)	1033
BfaI	CTAG	2 cut(s)	548, 1034
BfoI	RGCGCY	1 cut(s)	637
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	4 cut(s)	339, 822, 956, 963
BlsI	GCNGC	4 cut(s)	340, 823, 957, 964
Bme1390I	CCNGG	3 cut(s)	22, 189, 225
Bme18I	GGWCC	2 cut(s)	68, 933
BmeRI	GACNNNNNGTC	1 cut(s)	233
BmgT120I	GGNCC	2 cut(s)	68, 933
BmrFI	CCNGG	3 cut(s)	22, 189, 225
BmrI	ACTGGG	1 cut(s)	579
BmsI	GCATC	6 cut(s)	49, 356, 391, 681, 739, 818
BmuI	ACTGGG	1 cut(s)	579
BsaBI	GATNNNNATC	1 cut(s)	375
BsaI	GGTCTC	2 cut(s)	777, 850
BsaJI	CCNNGG	4 cut(s)	21, 47, 188, 1059
BsaXI	ACNNNNNCTCC	2 cut(s)	879, 909
Bsc4I	CCNNNNNNNGG	2 cut(s)	801, 1075
Bse1I	ACTGG	1 cut(s)	574
Bse21I	CCTNAGG	1 cut(s)	732
Bse3DI	GCAATG	1 cut(s)	105
Bse8I	GATNNNNATC	1 cut(s)	375
BseBI	CCWGG	3 cut(s)	22, 189, 225
BseDI	CCNNGG	4 cut(s)	21, 47, 188, 1059
BseGI	GGATG	5 cut(s)	64, 379, 658, 696, 753
BseJI	GATNNNNATC	1 cut(s)	375
BseLI	CCNNNNNNNGG	2 cut(s)	801, 1075
BseMI	GCAATG	1 cut(s)	105
BseMII	CTCAG	2 cut(s)	746, 788
BseNI	ACTGG	1 cut(s)	574
BseRI	GAGGAG	1 cut(s)	720
BseXI	GCAGC	3 cut(s)	350, 942, 974
Bsh1236I	CGCG	1 cut(s)	798
BshFI	GGCC	3 cut(s)	121, 146, 1064
BslFI	GGGAC	2 cut(s)	580, 1044
BslI	CCNNNNNNNGG	2 cut(s)	801, 1075
BsmAI	GTCTC	2 cut(s)	777, 850
BsmFI	GGGAC	2 cut(s)	580, 1044
BsnI	GGCC	3 cut(s)	121, 146, 1064
Bso31I	GGTCTC	2 cut(s)	777, 850
Bsp1286I	GDGCHC	1 cut(s)	979
Bsp143I	GATC	4 cut(s)	73, 322, 376, 1088
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	3 cut(s)	796, 822, 855
BspANI	GGCC	3 cut(s)	121, 146, 1064
BspCNI	CTCAG	2 cut(s)	745, 787
BspFNI	CGCG	1 cut(s)	798
BspPI	GGATC	1 cut(s)	1096
BspQI	GCTCTTC	2 cut(s)	708, 984
BspTNI	GGTCTC	2 cut(s)	777, 850
BsrDI	GCAATG	1 cut(s)	105
BsrI	ACTGG	1 cut(s)	574
BssECI	CCNNGG	4 cut(s)	21, 47, 188, 1059
BssMI	GATC	4 cut(s)	73, 322, 376, 1088
BssT1I	CCWWGG	2 cut(s)	47, 1059
Bst2UI	CCWGG	3 cut(s)	22, 189, 225
Bst4CI	ACNGT	3 cut(s)	184, 235, 442
Bst6I	CTCTTC	2 cut(s)	708, 984
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstC8I	GCNNGC	4 cut(s)	96, 123, 826, 960
BstDEI	CTNAG	4 cut(s)	241, 474, 732, 774
BstDSI	CCRYGG	1 cut(s)	47
BstEII	GGTNACC	1 cut(s)	41
BstF5I	GGATG	5 cut(s)	64, 379, 658, 696, 753
BstFNI	CGCG	1 cut(s)	798
BstH2I	RGCGCY	1 cut(s)	637
BstHHI	GCGC	1 cut(s)	636
BstKTI	GATC	4 cut(s)	76, 325, 379, 1091
BstMAI	GTCTC	2 cut(s)	777, 850
BstMBI	GATC	4 cut(s)	73, 322, 376, 1088
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 131, 344, 896
BstNI	CCWGG	3 cut(s)	22, 189, 225
BstNSI	RCATGY	2 cut(s)	410, 742
BstPI	GGTNACC	1 cut(s)	41
BstSCI	CCNGG	3 cut(s)	20, 187, 223
BstUI	CGCG	1 cut(s)	798
BstV1I	GCAGC	3 cut(s)	350, 942, 974
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
Bsu36I	CCTNAGG	1 cut(s)	732
BsuRI	GGCC	3 cut(s)	121, 146, 1064
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	5 cut(s)	64, 379, 658, 696, 753
BtsI	GCAGTG	3 cut(s)	277, 325, 897
BtsIMutI	CAGTG	4 cut(s)	198, 277, 325, 897
Cac8I	GCNNGC	4 cut(s)	96, 123, 826, 960
CfoI	GCGC	1 cut(s)	636
Cfr13I	GGNCC	2 cut(s)	68, 933
CseI	GACGC	3 cut(s)	425, 599, 787
CspCI	CAANNNNNGTGG	2 cut(s)	1054, 1089
CviAII	CATG	8 cut(s)	48, 344, 407, 638, 701, 739, 930, 1006
DdeI	CTNAG	4 cut(s)	241, 474, 732, 774
DpnI	GATC	4 cut(s)	75, 324, 378, 1090
DpnII	GATC	4 cut(s)	73, 322, 376, 1088
DriI	GACNNNNNGTC	1 cut(s)	233
EaeI	YGGCCR	2 cut(s)	144, 1062
Eam1104I	CTCTTC	2 cut(s)	708, 984
Eam1105I	GACNNNNNGTC	1 cut(s)	233
EarI	CTCTTC	2 cut(s)	708, 984
Eco130I	CCWWGG	2 cut(s)	47, 1059
Eco24I	GRGCYC	1 cut(s)	979
Eco31I	GGTCTC	2 cut(s)	777, 850
Eco47I	GGWCC	2 cut(s)	68, 933
Eco57I	CTGAAG	2 cut(s)	740, 820
Eco81I	CCTNAGG	1 cut(s)	732
Eco91I	GGTNACC	1 cut(s)	41
EcoO65I	GGTNACC	1 cut(s)	41
EcoRII	CCWGG	3 cut(s)	20, 187, 223
EcoT14I	CCWWGG	2 cut(s)	47, 1059
EcoT22I	ATGCAT	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	979
ErhI	CCWWGG	2 cut(s)	47, 1059
FaeI	CATG	8 cut(s)	51, 347, 410, 641, 704, 742, 933, 1009
FaqI	GGGAC	2 cut(s)	580, 1044
FatI	CATG	8 cut(s)	47, 343, 406, 637, 700, 738, 929, 1005
FauI	CCCGC	1 cut(s)	803
FbaI	TGATCA	2 cut(s)	322, 376
Fnu4HI	GCNGC	4 cut(s)	339, 822, 956, 963
FokI	GGATG	5 cut(s)	71, 366, 645, 683, 740
FriOI	GRGCYC	1 cut(s)	979
Fsp4HI	GCNGC	4 cut(s)	339, 822, 956, 963
FspBI	CTAG	2 cut(s)	548, 1034
GlaI	GCGC	1 cut(s)	635
GluI	GCNGC	4 cut(s)	339, 822, 956, 963
HaeII	RGCGCY	1 cut(s)	637
HaeIII	GGCC	3 cut(s)	121, 146, 1064
HgaI	GACGC	3 cut(s)	425, 599, 787
HhaI	GCGC	1 cut(s)	636
Hin1II	CATG	8 cut(s)	51, 347, 410, 641, 704, 742, 933, 1009
Hin6I	GCGC	1 cut(s)	634
HinP1I	GCGC	1 cut(s)	634
HincII	GTYRAC	2 cut(s)	238, 520
HindII	GTYRAC	2 cut(s)	238, 520
HinfI	GANTC	6 cut(s)	29, 307, 356, 371, 389, 431
HphI	GGTGA	2 cut(s)	35, 844
Hpy166II	GTNNAC	3 cut(s)	198, 238, 520
Hpy188I	TCNGA	6 cut(s)	160, 180, 306, 352, 376, 925
Hpy188III	TCNNGA	4 cut(s)	129, 383, 734, 802
Hpy8I	GTNNAC	3 cut(s)	198, 238, 520
Hpy99I	CGWCG	1 cut(s)	160
HpyAV	CCTTC	3 cut(s)	844, 878, 1021
HpyCH4III	ACNGT	3 cut(s)	184, 235, 442
HpyCH4V	TGCA	4 cut(s)	347, 404, 597, 704
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 131, 344, 896
HpyF3I	CTNAG	4 cut(s)	241, 474, 732, 774
Hsp92II	CATG	8 cut(s)	51, 347, 410, 641, 704, 742, 933, 1009
HspAI	GCGC	1 cut(s)	634
Ksp22I	TGATCA	2 cut(s)	322, 376
Kzo9I	GATC	4 cut(s)	73, 322, 376, 1088
LguI	GCTCTTC	2 cut(s)	708, 984
LmnI	GCTCC	2 cut(s)	487, 887
Lsp1109I	GCAGC	3 cut(s)	350, 942, 974
LweI	GCATC	6 cut(s)	49, 356, 391, 681, 739, 818
MaeI	CTAG	2 cut(s)	548, 1034
MaeIII	GTNAC	3 cut(s)	41, 763, 829
MalI	GATC	4 cut(s)	75, 324, 378, 1090
MboI	GATC	4 cut(s)	73, 322, 376, 1088
MboII	GAAGA	9 cut(s)	9, 303, 365, 406, 725, 733, 799, 971, 1036
MfeI	CAATTG	1 cut(s)	1109
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	979
MlsI	TGGCCA	1 cut(s)	1064
MluCI	AATT	5 cut(s)	13, 283, 555, 919, 1109
MluNI	TGGCCA	1 cut(s)	1064
MlyI	GAGTC	1 cut(s)	398
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	3 cut(s)	97, 218, 741
Mox20I	TGGCCA	1 cut(s)	1064
Mph1103I	ATGCAT	1 cut(s)	349
MscI	TGGCCA	1 cut(s)	1064
MseI	TTAA	4 cut(s)	444, 615, 780, 1053
MslI	CAYNNNNRTG	3 cut(s)	384, 411, 642
Msp20I	TGGCCA	1 cut(s)	1064
MspA1I	CMGCKG	1 cut(s)	965
MspR9I	CCNGG	3 cut(s)	22, 189, 225
MunI	CAATTG	1 cut(s)	1109
MvaI	CCWGG	3 cut(s)	22, 189, 225
MvnI	CGCG	1 cut(s)	798
MwoI	GCNNNNNNNGC	4 cut(s)	104, 131, 344, 896
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	4 cut(s)	73, 322, 376, 1088
NlaIII	CATG	8 cut(s)	51, 347, 410, 641, 704, 742, 933, 1009
NmuCI	GTSAC	3 cut(s)	41, 763, 829
NsiI	ATGCAT	1 cut(s)	349
NspI	RCATGY	2 cut(s)	410, 742
PciI	ACATGT	1 cut(s)	406
PciSI	GCTCTTC	2 cut(s)	708, 984
PfeI	GAWTC	5 cut(s)	29, 307, 356, 371, 431
PflFI	GACNNNGTC	1 cut(s)	769
PkrI	GCNGC	4 cut(s)	340, 823, 957, 964
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
PscI	ACATGT	1 cut(s)	406
Psp6I	CCWGG	3 cut(s)	20, 187, 223
PspEI	GGTNACC	1 cut(s)	41
PspGI	CCWGG	3 cut(s)	20, 187, 223
PspPI	GGNCC	2 cut(s)	68, 933
PsuI	RGATCY	1 cut(s)	73
PsyI	GACNNNGTC	1 cut(s)	769
PvuII	CAGCTG	1 cut(s)	965
RseI	CAYNNNNRTG	3 cut(s)	384, 411, 642
SapI	GCTCTTC	2 cut(s)	708, 984
SaqAI	TTAA	4 cut(s)	444, 615, 780, 1053
SatI	GCNGC	4 cut(s)	339, 822, 956, 963
Sau3AI	GATC	4 cut(s)	73, 322, 376, 1088
Sau96I	GGNCC	2 cut(s)	68, 933
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	3 cut(s)	22, 189, 225
SduI	GDGCHC	1 cut(s)	979
SfaNI	GCATC	6 cut(s)	49, 356, 391, 681, 739, 818
SinI	GGWCC	2 cut(s)	68, 933
SmiMI	CAYNNNNRTG	3 cut(s)	384, 411, 642
SpeI	ACTAGT	1 cut(s)	1033
Sse9I	AATT	5 cut(s)	13, 283, 555, 919, 1109
SsiI	CCGC	3 cut(s)	796, 822, 855
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	2 cut(s)	548, 1034
StyD4I	CCNGG	3 cut(s)	20, 187, 223
StyI	CCWWGG	2 cut(s)	47, 1059
TaaI	ACNGT	3 cut(s)	184, 235, 442
TaqI	TCGA	2 cut(s)	392, 945
TasI	AATT	5 cut(s)	13, 283, 555, 919, 1109
TauI	GCSGC	1 cut(s)	824
TfiI	GAWTC	5 cut(s)	29, 307, 356, 371, 431
Tru1I	TTAA	4 cut(s)	444, 615, 780, 1053
Tru9I	TTAA	4 cut(s)	444, 615, 780, 1053
TscAI	CASTG	4 cut(s)	205, 277, 325, 897
TseFI	GTSAC	3 cut(s)	41, 763, 829
TseI	GCWGC	3 cut(s)	338, 955, 962
Tsp45I	GTSAC	3 cut(s)	41, 763, 829
TspDTI	ATGAA	1 cut(s)	1037
TspGWI	ACGGA	1 cut(s)	244
TspRI	CASTG	4 cut(s)	205, 277, 325, 897
Tth111I	GACNNNGTC	1 cut(s)	769
VpaK11BI	GGWCC	2 cut(s)	68, 933
XapI	RAATTY	1 cut(s)	919
XceI	RCATGY	2 cut(s)	410, 742
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1072
XspI	CTAG	2 cut(s)	548, 1034
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.