Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002230

Physical Location & Seq

Genomic Coordinates Reverse (-)

43209610 .. 43214457

Gene Structure 4848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG296800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGGGCTGTGATAATTCTTCCAGGGTAGAATCAAAGCGTGGTCACCCATGGTATATGGATGCCAATGGACCAGATCTGTTCAACAACAAGAAGCAAGCAATGGAGGCTGTTGATGGCAGGCCAGCGTCAAGAGCTCCAAACTTGGCCGTTGCCCCGTGGGATAACACTTCTGGGTTTCAGACAGTTCCAGGGCAGTTCACTGACCGCCCTTTTGGACAAGAGCCTGGACGGACAGTTAACTTAGTTGATAGAAACATTCAGTCTCTTGGCAGTGGAACTATAAATTTTGGAAGAAAAGGGTTTCAGAATCAATATGGCAATGATCAGTCAGTGGATTTGTCAATGTCCCACACCATCGAAGATCCTTCATCATGTCTCAGTTTTGGTGGAATCAGAAAAGTGAAAGTTAATGAAGTTAAGGACTCTGATAATGCTGTGTCTGCATCTATGGGGCACTCCTACAGAAGGGGAGACAATAATACAATTTCAATGTGTACTACCTATACCAAGAGTGATGAAAACATCATTTCATTAAGTCCACCTTACAATGCTGACGAGAATGCCATCTCATTAGCGACTACTTTTAATAAGGCAGATGACAATTTCATCTCAGTTGGTCATACTTTTGGCAAGGGAGATGACACTTTCATATCGATGGCTCATAATTACAGCAAGGGTGACACTCGTATGTTATCAATGGGTCAGCCCTTTGAGAAGGAGAATGGAAGTTTTATGTCAATTGGTCAGTCATATGAAAAGGGAGATGGCAGTTTCATATCATTAGGTAACTCCTACAACAAAGTGAATGAGAATTTCATTTCTATGGGTCCAGTATATGGTAGAGGAGACGATAATTTGATCTCAGTGGCTCCGACCTATGATAAGCATGCTGATAACACTATATCAATGGGTCTGACCTATGCCAAGGCTGATTCGAATATTTTGCCAATGGGTCCTCCTTATGATAAATCAGATAGAGATCTACCTATGAGTCACAGTTACAATAAGAATGAGAGCAATACCATATCTTTTGGTGGTTTCCATGATGAATCTGAGACAAACCCTTCTGGTGGGATCATCAGTAGCTGTGGTTTGTTGACTTGTAATCAGAACACACCAGCTCACGCATCGGAAGAATCTGGTGTGAGAGGTTCTGATCATCCTGTTGAGACGAAGATGGATGCACATGTAGATGACACTGTGAAAGTTGACTCCAAAACTGTTAATATTCCCAGAGTAAAAGAGCCAAAGACTAAGAAAGCTCCTCCAAACAACTTTCCTTCGAATGTCAAAAGTTTGTTGTCAACTGGTATGTTTGATGGTATTCCTGTGAAGTATTCTTCCTGGTCACGGGAGGTAAGCTTGTTTACCCTTGAATACTCTGATTTTTTGTTTGTTTGTTTGTTTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas

Protein Analysis

470

Amino Acids

51.37

Weight (kDa)

5.43

Isoelectric Point (pI)

38.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13660 AT5G13660 AT5G13660 AT5G13660 AT5G13660 AT5G13660 AT5G13660
fragaria_vesca	FvH4_7g21830 FvH4_7g21830 FvH4_7g21830
malus_domestica	MD01G1123100.v1.1 MD07G1192800.v1.1
prunus_persica	Prupe.2G230700_v2.0.a1
pyrus_communis	pycom01g15000 pycom07g18230
rosa_chinensis	RchiOBHm_Chr1g0366111 RchiOBHm_Chr7g0232731
rosa_laevigata	RLG00000017112 RLG00000027367
rosa_multiflora	Rmu_co7957917.1_g000001 Rmu_co8165832.1_g000001 Rmu_sc0003987.1_g000004 Rmu_sc0005795.1_g000008
rosa_roxburghii	Rroxscaffold_3G00227900 Rroxscaffold_4G00290490
rosa_rugosa	Rorug01G0133500.1 Rorug01G0327400 Rorug01G0327500 Rorug01G0327600
rosa_samantha	Rh1AG335600 Rh1BG296800 Rh1CG313000 Rh1DG328700 Rh2AG150700 Rh2AG150900 Rh2BG156400 Rh2DG156300 Rh2DG156500 Rh7AG431000 Rh7AG431100 Rh7CG449600 Rh7CG449700
rosa_wichuraiana	Rw1G029770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	836
AciI	CCGC	1 cut(s)	205
AclWI	GGATC	2 cut(s)	356, 1082
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	2 cut(s)	283, 811
AfaI	GTAC	1 cut(s)	496
AfiI	CCNNNNNNNGG	4 cut(s)	465, 836, 1070, 1350
AflIII	ACRYGT	1 cut(s)	1186
AgsI	TTSAA	3 cut(s)	82, 489, 1376
AjnI	CCWGG	4 cut(s)	20, 187, 223, 1343
AluBI	AGCT	5 cut(s)	134, 1086, 1121, 1262, 1362
AluI	AGCT	5 cut(s)	134, 1086, 1121, 1262, 1362
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	6 cut(s)	267, 380, 465, 840, 1049, 1163
AlwI	GGATC	2 cut(s)	356, 1082
AlwNI	CAGNNNCTG	1 cut(s)	1086
AoxI	GGCC	2 cut(s)	119, 144
ApoI	RAATTY	2 cut(s)	283, 811
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AspS9I	GGNCC	3 cut(s)	68, 827, 953
AsuHPI	GGTGA	2 cut(s)	35, 689
AsuII	TTCGAA	2 cut(s)	935, 1283
AvaII	GGWCC	3 cut(s)	68, 827, 953
BaeGI	GKGCMC	1 cut(s)	456
BanII	GRGCYC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	136
BccI	CCATC	7 cut(s)	107, 362, 572, 649, 758, 1171, 1313
BceAI	ACGGC	1 cut(s)	131
BcgI	CGANNNNNNTGC	2 cut(s)	925, 959
BciT130I	CCWGG	4 cut(s)	22, 189, 225, 1345
BclI	TGATCA	2 cut(s)	322, 1156
BcoDI	GTCTC	6 cut(s)	267, 380, 465, 840, 1049, 1163
BfmI	CTRYAG	1 cut(s)	460
BglII	AGATCT	2 cut(s)	73, 979
Bme1390I	CCNGG	4 cut(s)	22, 189, 225, 1345
Bme18I	GGWCC	3 cut(s)	68, 827, 953
BmgT120I	GGNCC	3 cut(s)	68, 827, 953
BmiI	GGNNCC	3 cut(s)	828, 870, 954
BmrFI	CCNGG	4 cut(s)	22, 189, 225, 1345
BmsI	GCATC	4 cut(s)	49, 452, 1136, 1171
Bpu14I	TTCGAA	2 cut(s)	935, 1283
Bsa29I	ATCGAT	1 cut(s)	653
BsaBI	GATNNNNATC	1 cut(s)	978
BsaJI	CCNNGG	5 cut(s)	21, 47, 155, 188, 924
Bsc4I	CCNNNNNNNGG	4 cut(s)	465, 836, 1070, 1350
Bse1I	ACTGG	2 cut(s)	830, 1312
Bse3DI	GCAATG	2 cut(s)	105, 325
Bse8I	GATNNNNATC	1 cut(s)	978
BseBI	CCWGG	4 cut(s)	22, 189, 225, 1345
BseCI	ATCGAT	1 cut(s)	653
BseDI	CCNNGG	5 cut(s)	21, 47, 155, 188, 924
BseGI	GGATG	3 cut(s)	64, 1159, 1186
BseJI	GATNNNNATC	1 cut(s)	978
BseLI	CCNNNNNNNGG	4 cut(s)	465, 836, 1070, 1350
BseMI	GCAATG	2 cut(s)	105, 325
BseMII	CTCAG	4 cut(s)	391, 624, 876, 1044
BseNI	ACTGG	2 cut(s)	830, 1312
BseRI	GAGGAG	2 cut(s)	858, 1254
BseSI	GKGCMC	1 cut(s)	456
BshFI	GGCC	2 cut(s)	121, 146
BshVI	ATCGAT	1 cut(s)	653
BsiHKAI	GWGCWC	1 cut(s)	136
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	4 cut(s)	465, 836, 1070, 1350
BsmAI	GTCTC	6 cut(s)	267, 380, 465, 840, 1049, 1163
BsmBI	CGTCTC	2 cut(s)	840, 1163
BsmFI	GGGAC	1 cut(s)	331
BsmI	GAATGC	1 cut(s)	565
BsnI	GGCC	2 cut(s)	121, 146
Bsp119I	TTCGAA	2 cut(s)	935, 1283
Bsp1286I	GDGCHC	2 cut(s)	136, 456
Bsp143I	GATC	7 cut(s)	73, 322, 361, 858, 979, 1074, 1156
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	1 cut(s)	205
BspANI	GGCC	2 cut(s)	121, 146
BspCNI	CTCAG	4 cut(s)	390, 623, 875, 1045
BspDI	ATCGAT	1 cut(s)	653
BspLI	GGNNCC	3 cut(s)	828, 870, 954
BspPI	GGATC	2 cut(s)	356, 1082
BspT104I	TTCGAA	2 cut(s)	935, 1283
BsrDI	GCAATG	2 cut(s)	105, 325
BsrI	ACTGG	2 cut(s)	830, 1312
BssECI	CCNNGG	5 cut(s)	21, 47, 155, 188, 924
BssMI	GATC	7 cut(s)	73, 322, 361, 858, 979, 1074, 1156
BssT1I	CCWWGG	2 cut(s)	47, 924
Bst2UI	CCWGG	4 cut(s)	22, 189, 225, 1345
Bst4CI	ACNGT	5 cut(s)	184, 235, 998, 1201, 1222
BstBI	TTCGAA	2 cut(s)	935, 1283
BstC8I	GCNNGC	4 cut(s)	96, 119, 123, 888
BstDEI	CTNAG	6 cut(s)	241, 377, 610, 862, 1053, 1254
BstDSI	CCRYGG	2 cut(s)	47, 155
BstEII	GGTNACC	1 cut(s)	41
BstENI	CCTNNNNNAGG	1 cut(s)	463
BstF5I	GGATG	3 cut(s)	64, 1159, 1186
BstKTI	GATC	7 cut(s)	76, 325, 364, 861, 982, 1077, 1159
BstMAI	GTCTC	6 cut(s)	267, 380, 465, 840, 1049, 1163
BstMBI	GATC	7 cut(s)	73, 322, 361, 858, 979, 1074, 1156
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 131, 440
BstNI	CCWGG	4 cut(s)	22, 189, 225, 1345
BstNSI	RCATGY	2 cut(s)	890, 1190
BstPI	GGTNACC	1 cut(s)	41
BstSCI	CCNGG	4 cut(s)	20, 187, 223, 1343
BstSFI	CTRYAG	1 cut(s)	460
BstSLI	GKGCMC	1 cut(s)	456
BstX2I	RGATCY	3 cut(s)	73, 361, 979
BstYI	RGATCY	3 cut(s)	73, 361, 979
Bsu15I	ATCGAT	1 cut(s)	653
BsuRI	GGCC	2 cut(s)	121, 146
BsuTUI	ATCGAT	1 cut(s)	653
BtgI	CCRYGG	2 cut(s)	47, 155
BtsCI	GGATG	3 cut(s)	64, 1159, 1186
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	5 cut(s)	198, 277, 336, 870, 1197
Cac8I	GCNNGC	4 cut(s)	96, 119, 123, 888
CaiI	CAGNNNCTG	1 cut(s)	1086
Cfr13I	GGNCC	3 cut(s)	68, 827, 953
ClaI	ATCGAT	1 cut(s)	653
CseI	GACGC	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	495
CviAII	CATG	5 cut(s)	48, 372, 887, 1043, 1187
CviQI	GTAC	1 cut(s)	495
DdeI	CTNAG	6 cut(s)	241, 377, 610, 862, 1053, 1254
DpnI	GATC	7 cut(s)	75, 324, 363, 860, 981, 1076, 1158
DpnII	GATC	7 cut(s)	73, 322, 361, 858, 979, 1074, 1156
EaeI	YGGCCR	1 cut(s)	144
Ecl136II	GAGCTC	1 cut(s)	134
Eco130I	CCWWGG	2 cut(s)	47, 924
Eco24I	GRGCYC	1 cut(s)	136
Eco47I	GGWCC	3 cut(s)	68, 827, 953
Eco53kI	GAGCTC	1 cut(s)	134
Eco91I	GGTNACC	1 cut(s)	41
EcoICRI	GAGCTC	1 cut(s)	134
EcoNI	CCTNNNNNAGG	1 cut(s)	463
EcoO109I	RGGNCCY	1 cut(s)	953
EcoO65I	GGTNACC	1 cut(s)	41
EcoRII	CCWGG	4 cut(s)	20, 187, 223, 1343
EcoT14I	CCWWGG	2 cut(s)	47, 924
EcoT38I	GRGCYC	1 cut(s)	136
ErhI	CCWWGG	2 cut(s)	47, 924
Esp3I	CGTCTC	2 cut(s)	840, 1163
FaeI	CATG	5 cut(s)	51, 375, 890, 1046, 1190
FalI	AAGNNNNNCTT	2 cut(s)	526, 558
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	5 cut(s)	47, 371, 886, 1042, 1186
FauNDI	CATATG	1 cut(s)	751
FbaI	TGATCA	2 cut(s)	322, 1156
FokI	GGATG	3 cut(s)	71, 1146, 1193
FriOI	GRGCYC	1 cut(s)	136
HaeIII	GGCC	2 cut(s)	121, 146
HgaI	GACGC	1 cut(s)	114
Hin1II	CATG	5 cut(s)	51, 375, 890, 1046, 1190
HincII	GTYRAC	4 cut(s)	238, 1098, 1210, 1305
HindII	GTYRAC	4 cut(s)	238, 1098, 1210, 1305
HindIII	AAGCTT	1 cut(s)	1360
HinfI	GANTC	9 cut(s)	29, 307, 390, 422, 932, 991, 1049, 1136, 1211
HpaI	GTTAAC	1 cut(s)	238
HphI	GGTGA	2 cut(s)	35, 689
Hpy166II	GTNNAC	8 cut(s)	198, 238, 495, 539, 1098, 1210, 1305, 1368
Hpy188III	TCNNGA	1 cut(s)	129
Hpy8I	GTNNAC	8 cut(s)	198, 238, 495, 539, 1098, 1210, 1305, 1368
HpyAV	CCTTC	5 cut(s)	375, 459, 709, 1074, 1290
HpyCH4III	ACNGT	5 cut(s)	184, 235, 998, 1201, 1222
HpyCH4V	TGCA	2 cut(s)	443, 1184
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 131, 440
HpyF3I	CTNAG	6 cut(s)	241, 377, 610, 862, 1053, 1254
Hsp92II	CATG	5 cut(s)	51, 375, 890, 1046, 1190
Ksp22I	TGATCA	2 cut(s)	322, 1156
KspAI	GTTAAC	1 cut(s)	238
Kzo9I	GATC	7 cut(s)	73, 322, 361, 858, 979, 1074, 1156
LmnI	GCTCC	3 cut(s)	139, 874, 1267
LweI	GCATC	4 cut(s)	49, 452, 1136, 1171
MaeIII	GTNAC	6 cut(s)	41, 677, 785, 992, 998, 1347
MalI	GATC	7 cut(s)	75, 324, 363, 860, 981, 1076, 1158
MboI	GATC	7 cut(s)	73, 322, 361, 858, 979, 1074, 1156
MboII	GAAGA	6 cut(s)	9, 303, 371, 1145, 1186, 1332
MfeI	CAATTG	1 cut(s)	738
MflI	RGATCY	3 cut(s)	73, 361, 979
MhlI	GDGCHC	2 cut(s)	136, 456
MluCI	AATT	8 cut(s)	13, 283, 483, 601, 664, 738, 811, 853
MlyI	GAGTC	3 cut(s)	416, 1000, 1205
MmeI	TCCRAC	1 cut(s)	896
MnlI	CCTC	6 cut(s)	97, 836, 966, 1142, 1275, 1348
MseI	TTAA	6 cut(s)	237, 408, 417, 533, 585, 1224
MslI	CAYNNNNRTG	4 cut(s)	653, 686, 821, 1191
MspR9I	CCNGG	4 cut(s)	22, 189, 225, 1345
MunI	CAATTG	1 cut(s)	738
Mva1269I	GAATGC	1 cut(s)	565
MvaI	CCWGG	4 cut(s)	22, 189, 225, 1345
MwoI	GCNNNNNNNGC	3 cut(s)	104, 131, 440
NcoI	CCATGG	1 cut(s)	47
NdeI	CATATG	1 cut(s)	751
NdeII	GATC	7 cut(s)	73, 322, 361, 858, 979, 1074, 1156
NlaIII	CATG	5 cut(s)	51, 375, 890, 1046, 1190
NlaIV	GGNNCC	3 cut(s)	828, 870, 954
NmuCI	GTSAC	4 cut(s)	41, 677, 992, 1347
NspI	RCATGY	2 cut(s)	890, 1190
NspV	TTCGAA	2 cut(s)	935, 1283
PaeI	GCATGC	1 cut(s)	890
PciI	ACATGT	1 cut(s)	1186
PctI	GAATGC	1 cut(s)	565
PfeI	GAWTC	6 cut(s)	29, 307, 390, 932, 1049, 1136
PflMI	CCANNNNNTGG	1 cut(s)	836
PleI	GAGTC	3 cut(s)	416, 999, 1205
PpsI	GAGTC	3 cut(s)	416, 999, 1205
PpuMI	RGGWCCY	1 cut(s)	953
PscI	ACATGT	1 cut(s)	1186
Psp124BI	GAGCTC	1 cut(s)	136
Psp5II	RGGWCCY	1 cut(s)	953
Psp6I	CCWGG	4 cut(s)	20, 187, 223, 1343
PspEI	GGTNACC	1 cut(s)	41
PspGI	CCWGG	4 cut(s)	20, 187, 223, 1343
PspN4I	GGNNCC	3 cut(s)	828, 870, 954
PspPI	GGNCC	3 cut(s)	68, 827, 953
PspPPI	RGGWCCY	1 cut(s)	953
PstNI	CAGNNNCTG	1 cut(s)	1086
PsuI	RGATCY	3 cut(s)	73, 361, 979
RsaI	GTAC	1 cut(s)	496
RsaNI	GTAC	1 cut(s)	495
RseI	CAYNNNNRTG	4 cut(s)	653, 686, 821, 1191
SacI	GAGCTC	1 cut(s)	136
SaqAI	TTAA	6 cut(s)	237, 408, 417, 533, 585, 1224
Sau3AI	GATC	7 cut(s)	73, 322, 361, 858, 979, 1074, 1156
Sau96I	GGNCC	3 cut(s)	68, 827, 953
SchI	GAGTC	3 cut(s)	416, 1000, 1205
ScrFI	CCNGG	4 cut(s)	22, 189, 225, 1345
SduI	GDGCHC	2 cut(s)	136, 456
SfaNI	GCATC	4 cut(s)	49, 452, 1136, 1171
SfcI	CTRYAG	1 cut(s)	460
SfuI	TTCGAA	2 cut(s)	935, 1283
SinI	GGWCC	3 cut(s)	68, 827, 953
SmiMI	CAYNNNNRTG	4 cut(s)	653, 686, 821, 1191
SphI	GCATGC	1 cut(s)	890
Sse9I	AATT	8 cut(s)	13, 283, 483, 601, 664, 738, 811, 853
SsiI	CCGC	1 cut(s)	205
SspI	AATATT	2 cut(s)	940, 1228
SstI	GAGCTC	1 cut(s)	136
StyD4I	CCNGG	4 cut(s)	20, 187, 223, 1343
StyI	CCWWGG	2 cut(s)	47, 924
TaaI	ACNGT	5 cut(s)	184, 235, 998, 1201, 1222
TaqI	TCGA	4 cut(s)	357, 653, 935, 1283
TasI	AATT	8 cut(s)	13, 283, 483, 601, 664, 738, 811, 853
TatI	WGTACW	1 cut(s)	494
TfiI	GAWTC	6 cut(s)	29, 307, 390, 932, 1049, 1136
Tru1I	TTAA	6 cut(s)	237, 408, 417, 533, 585, 1224
Tru9I	TTAA	6 cut(s)	237, 408, 417, 533, 585, 1224
TscAI	CASTG	5 cut(s)	205, 277, 336, 870, 1204
TseFI	GTSAC	4 cut(s)	41, 677, 992, 1347
Tsp45I	GTSAC	4 cut(s)	41, 677, 992, 1347
TspGWI	ACGGA	1 cut(s)	244
TspRI	CASTG	5 cut(s)	205, 277, 336, 870, 1204
Van91I	CCANNNNNTGG	1 cut(s)	836
VpaK11BI	GGWCC	3 cut(s)	68, 827, 953
XagI	CCTNNNNNAGG	1 cut(s)	463
XapI	RAATTY	2 cut(s)	283, 811
XceI	RCATGY	2 cut(s)	890, 1190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.