Rh2DG156500

TPL-binding domain in jasmonate signalling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002230
Physical Location & Seq
Forward (+)
13093612 .. 13094307
696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG156500.1

Sequence Viewer

Length: 348 bp
ATGTTTGATAGTATTCCTGTGAAGTATTCTTCCTGGTCACGAGAGAAAAACCTAGATGGAATTATCAAAGGGACTGGGTATCTATGCTCTTGTGCTGACTGCAATCACTCAAAGCGTCTTAATGCTTACGAGTTTGAGCGCCATGCTTGTGCCAAGACCAAACATCCCAATAATCGCATCTACTTTGAGAATGGAAAGACCATCCATGCAGTAGTTGAAGAGCTGAAGAACACTCCTCAGGACATGCTCTTTGATGCCATCCAAAATGTGACAGGGTCTCAGGTTAATAAGAACTTCCGCGTCTGGATAGCATCATTCCAAGCCGCCAGCGTGACCTTCAGCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas

Protein Analysis

115

Amino Acids

13.08

Weight (kDa)

8.72

Isoelectric Point (pI)

27.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 20 - 74 2.1e-12 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 300
AciI CCGC 2 cut(s) 298, 324
AcuI CTGAAG 2 cut(s) 245, 322
AgsI TTSAA 1 cut(s) 218
AjnI CCWGG 1 cut(s) 32
AluBI AGCT 1 cut(s) 223
AluI AGCT 1 cut(s) 223
Alw26I GTCTC 1 cut(s) 282
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
AspLEI GCGC 1 cut(s) 141
AxyI CCTNAGG 1 cut(s) 237
BauI CACGAG 1 cut(s) 39
BccI CCATC 3 cut(s) 50, 209, 266
BciT130I CCWGG 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 282
BfaI CTAG 1 cut(s) 53
BfoI RGCGCY 1 cut(s) 142
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
Bme1390I CCNGG 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 34
BmrI ACTGGG 1 cut(s) 84
BmsI GCATC 3 cut(s) 186, 244, 320
BmuI ACTGGG 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 282
Bse1I ACTGG 1 cut(s) 79
Bse21I CCTNAGG 1 cut(s) 237
BseBI CCWGG 1 cut(s) 34
BseGI GGATG 3 cut(s) 163, 201, 258
BseMII CTCAG 2 cut(s) 251, 293
BseNI ACTGG 1 cut(s) 79
BseRI GAGGAG 1 cut(s) 225
Bsh1236I CGCG 1 cut(s) 300
BslFI GGGAC 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 282
BsmFI GGGAC 1 cut(s) 85
Bso31I GGTCTC 1 cut(s) 282
BspACI CCGC 2 cut(s) 298, 324
BspCNI CTCAG 2 cut(s) 250, 292
BspFNI CGCG 1 cut(s) 300
BspQI GCTCTTC 1 cut(s) 213
BspTNI GGTCTC 1 cut(s) 282
BsrI ACTGG 1 cut(s) 79
BssSI CACGAG 1 cut(s) 39
Bst2BI CACGAG 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 328
BstDEI CTNAG 2 cut(s) 237, 279
BstF5I GGATG 3 cut(s) 163, 201, 258
BstFNI CGCG 1 cut(s) 300
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 1 cut(s) 141
BstMAI GTCTC 1 cut(s) 282
BstNI CCWGG 1 cut(s) 34
BstNSI RCATGY 1 cut(s) 247
BstSCI CCNGG 1 cut(s) 32
BstUI CGCG 1 cut(s) 300
Bsu36I CCTNAGG 1 cut(s) 237
BtsCI GGATG 3 cut(s) 163, 201, 258
Cac8I GCNNGC 1 cut(s) 328
CfoI GCGC 1 cut(s) 141
CseI GACGC 2 cut(s) 104, 289
CviAII CATG 3 cut(s) 143, 206, 244
CviJI RGCY 2 cut(s) 223, 323
CviKI_1 RGCY 2 cut(s) 223, 323
DdeI CTNAG 2 cut(s) 237, 279
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco31I GGTCTC 1 cut(s) 282
Eco57I CTGAAG 2 cut(s) 245, 322
Eco81I CCTNAGG 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 32
FaeI CATG 3 cut(s) 146, 209, 247
FaiI YATR 4 cut(s) 85, 144, 207, 245
FaqI GGGAC 1 cut(s) 85
FatI CATG 3 cut(s) 142, 205, 243
Fnu4HI GCNGC 1 cut(s) 324
FokI GGATG 3 cut(s) 150, 188, 245
Fsp4HI GCNGC 1 cut(s) 324
FspBI CTAG 1 cut(s) 53
GlaI GCGC 1 cut(s) 140
GluI GCNGC 1 cut(s) 324
HaeII RGCGCY 1 cut(s) 142
HgaI GACGC 2 cut(s) 104, 289
HhaI GCGC 1 cut(s) 141
Hin1II CATG 3 cut(s) 146, 209, 247
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
Hpy188III TCNNGA 3 cut(s) 39, 239, 304
HpyAV CCTTC 1 cut(s) 346
HpyCH4V TGCA 2 cut(s) 102, 209
HpyF3I CTNAG 2 cut(s) 237, 279
Hsp92II CATG 3 cut(s) 146, 209, 247
HspAI GCGC 1 cut(s) 139
LguI GCTCTTC 1 cut(s) 213
LpnPI CCDG 9 cut(s) 19, 30, 46, 60, 224, 258, 266, 289, 340
LweI GCATC 3 cut(s) 186, 244, 320
MaeI CTAG 1 cut(s) 53
MaeIII GTNAC 3 cut(s) 36, 268, 331
MboII GAAGA 3 cut(s) 21, 230, 238
MluCI AATT 1 cut(s) 60
MnlI CCTC 1 cut(s) 246
MseI TTAA 2 cut(s) 120, 285
MslI CAYNNNNRTG 1 cut(s) 147
MspR9I CCNGG 1 cut(s) 34
MvaI CCWGG 1 cut(s) 34
MvnI CGCG 1 cut(s) 300
NlaIII CATG 3 cut(s) 146, 209, 247
NmuCI GTSAC 3 cut(s) 36, 268, 331
NspI RCATGY 1 cut(s) 247
PciSI GCTCTTC 1 cut(s) 213
PflFI GACNNNGTC 1 cut(s) 274
PkrI GCNGC 1 cut(s) 325
Psp6I CCWGG 1 cut(s) 32
PspGI CCWGG 1 cut(s) 32
PsyI GACNNNGTC 1 cut(s) 274
RseI CAYNNNNRTG 1 cut(s) 147
SapI GCTCTTC 1 cut(s) 213
SaqAI TTAA 2 cut(s) 120, 285
SatI GCNGC 1 cut(s) 324
ScrFI CCNGG 1 cut(s) 34
SetI ASST 4 cut(s) 54, 225, 285, 338
SfaNI GCATC 3 cut(s) 186, 244, 320
SmiMI CAYNNNNRTG 1 cut(s) 147
Sse9I AATT 1 cut(s) 60
SsiI CCGC 2 cut(s) 298, 324
SspMI CTAG 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 32
TasI AATT 1 cut(s) 60
TauI GCSGC 1 cut(s) 326
Tru1I TTAA 2 cut(s) 120, 285
Tru9I TTAA 2 cut(s) 120, 285
TseFI GTSAC 3 cut(s) 36, 268, 331
Tsp45I GTSAC 3 cut(s) 36, 268, 331
Tth111I GACNNNGTC 1 cut(s) 274
XceI RCATGY 1 cut(s) 247
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.