RchiOBHm_Chr7g0232731

TPL-binding domain in jasmonate signalling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002230
Physical Location & Seq
Forward (+)
56971078 .. 56973106
2029 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20861

Sequence Viewer

Length: 273 bp
ATGTTTGATAGTATTCCTGTGAAGTATTCTTCCTGGTCACGAGAGAAAAACCTAGATGGAATTGTCAAAGGGTCTTGTCGTCTTAATGCTTACGAGTTTGAGCGCCATGCTTGTGCCAAGACCAAACATCCCAATAATCGCATCTACTTTGAGAATGGAAAGACCATCCATGCAGGAGTTGAAGAGCTGAAGAACACTCCTCAGGACATGCTCTTTGATGCCATCCAAAATGTGACAGGGTCTCAGGTTAATAAGAAGAACTTCCGCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas

Protein Analysis

90

Amino Acids

10.36

Weight (kDa)

9.23

Isoelectric Point (pI)

32.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 27 - 57 3.6e-06 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 267
AciI CCGC 1 cut(s) 265
AcuI CTGAAG 1 cut(s) 209
AgsI TTSAA 1 cut(s) 182
AjnI CCWGG 1 cut(s) 32
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
Alw26I GTCTC 1 cut(s) 246
ArsI GACNNNNNNTTYG 2 cut(s) 197, 229
Asp700I GAANNNNTTC 1 cut(s) 260
AspLEI GCGC 1 cut(s) 105
AxyI CCTNAGG 1 cut(s) 201
BauI CACGAG 1 cut(s) 39
BccI CCATC 3 cut(s) 50, 173, 230
BciT130I CCWGG 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 246
BfaI CTAG 1 cut(s) 53
BfoI RGCGCY 1 cut(s) 106
Bme1390I CCNGG 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 34
BmsI GCATC 2 cut(s) 150, 208
BsaI GGTCTC 1 cut(s) 246
Bse21I CCTNAGG 1 cut(s) 201
BseBI CCWGG 1 cut(s) 34
BseGI GGATG 3 cut(s) 127, 165, 222
BseMII CTCAG 2 cut(s) 215, 257
BseRI GAGGAG 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 267
BsmAI GTCTC 1 cut(s) 246
Bso31I GGTCTC 1 cut(s) 246
BspACI CCGC 1 cut(s) 265
BspCNI CTCAG 2 cut(s) 214, 256
BspFNI CGCG 1 cut(s) 267
BspQI GCTCTTC 1 cut(s) 177
BspTNI GGTCTC 1 cut(s) 246
BssSI CACGAG 1 cut(s) 39
Bst2BI CACGAG 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 177
BstDEI CTNAG 2 cut(s) 201, 243
BstF5I GGATG 3 cut(s) 127, 165, 222
BstFNI CGCG 1 cut(s) 267
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 1 cut(s) 105
BstMAI GTCTC 1 cut(s) 246
BstNI CCWGG 1 cut(s) 34
BstNSI RCATGY 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 32
BstUI CGCG 1 cut(s) 267
Bsu36I CCTNAGG 1 cut(s) 201
BtsCI GGATG 3 cut(s) 127, 165, 222
CfoI GCGC 1 cut(s) 105
CseI GACGC 1 cut(s) 256
CviAII CATG 3 cut(s) 107, 170, 208
CviJI RGCY 1 cut(s) 187
CviKI_1 RGCY 1 cut(s) 187
DdeI CTNAG 2 cut(s) 201, 243
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco31I GGTCTC 1 cut(s) 246
Eco57I CTGAAG 1 cut(s) 209
Eco81I CCTNAGG 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 32
FaeI CATG 3 cut(s) 110, 173, 211
FaiI YATR 3 cut(s) 108, 171, 209
FalI AAGNNNNNCTT 1 cut(s) 245
FatI CATG 3 cut(s) 106, 169, 207
FokI GGATG 3 cut(s) 114, 152, 209
FspBI CTAG 1 cut(s) 53
GlaI GCGC 1 cut(s) 104
HaeII RGCGCY 1 cut(s) 106
HgaI GACGC 1 cut(s) 256
HhaI GCGC 1 cut(s) 105
Hin1II CATG 3 cut(s) 110, 173, 211
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
Hpy188I TCNGA 1 cut(s) 272
Hpy188III TCNNGA 2 cut(s) 39, 203
HpyCH4V TGCA 1 cut(s) 173
HpyF3I CTNAG 2 cut(s) 201, 243
Hsp92II CATG 3 cut(s) 110, 173, 211
HspAI GCGC 1 cut(s) 103
LguI GCTCTTC 1 cut(s) 177
LpnPI CCDG 7 cut(s) 19, 30, 46, 159, 188, 222, 230
LweI GCATC 2 cut(s) 150, 208
MaeI CTAG 1 cut(s) 53
MaeIII GTNAC 2 cut(s) 36, 232
MboII GAAGA 4 cut(s) 21, 194, 202, 268
MluCI AATT 1 cut(s) 60
MnlI CCTC 1 cut(s) 210
MroXI GAANNNNTTC 1 cut(s) 260
MseI TTAA 2 cut(s) 84, 249
MslI CAYNNNNRTG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 34
MvaI CCWGG 1 cut(s) 34
MvnI CGCG 1 cut(s) 267
NlaIII CATG 3 cut(s) 110, 173, 211
NmuCI GTSAC 2 cut(s) 36, 232
NspI RCATGY 1 cut(s) 211
PciSI GCTCTTC 1 cut(s) 177
PdmI GAANNNNTTC 1 cut(s) 260
PflFI GACNNNGTC 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 32
PspGI CCWGG 1 cut(s) 32
PsyI GACNNNGTC 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 111
SapI GCTCTTC 1 cut(s) 177
SaqAI TTAA 2 cut(s) 84, 249
ScrFI CCNGG 1 cut(s) 34
SetI ASST 3 cut(s) 54, 189, 249
SfaNI GCATC 2 cut(s) 150, 208
SmiMI CAYNNNNRTG 1 cut(s) 111
Sse9I AATT 1 cut(s) 60
SsiI CCGC 1 cut(s) 265
SspMI CTAG 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 32
TasI AATT 1 cut(s) 60
Tru1I TTAA 2 cut(s) 84, 249
Tru9I TTAA 2 cut(s) 84, 249
TseFI GTSAC 2 cut(s) 36, 232
Tsp45I GTSAC 2 cut(s) 36, 232
Tth111I GACNNNGTC 1 cut(s) 238
XceI RCATGY 1 cut(s) 211
XmnI GAANNNNTTC 1 cut(s) 260
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.