Rorug01G0327500

TPL-binding domain in jasmonate signalling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002230
Physical Location & Seq
Reverse (-)
44690563 .. 44691741
1179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0327500.1

Sequence Viewer

Length: 975 bp
ATGGCTTCTAATAACGTCAAGAACGCAGTGGTTGCATTTCTAGCTCCCCTGCCCTCCATTCTCTTCTACCTCACATTCCTCCACAACCACCAAACCAGTAGTAGCCCTGAGGCTCTCTCTCCTATTTGGGCATGGTGTTATCACCACCCTCTTCTTTTAGCCAATGCCCTCTTCTTCTTCAACGTCAATGTCCTCTTCTGGGTCATCAGCCAAGTCCTCTCCAGCCATTGGATGATCGATTTGTATTGGACTGTGATACCCGTAATGCTGGTTCATTACTACCGGACTCACCCTCTGGCTGATTTTAACTGGTGGCGGTCAACGATTGGAGTGGTGTTGACTTGGGTTTGGAGCGTAAGGCTGACCCATAACTATTTTAGGCGGGAAAATTGGCAATGGGGAGCCAGAGAGGACTGGAGGTTCACTGATATGAACTCACAGTACGGCAAGCAGTGGTGGTGGATTTCGTTTTTTGCTGTTTATCTTTCTCAGCAGGTTTTTCTGATTGGAATATGCCTTCCTTTGTATGTGATCCACTCGGTTAATGTGCCATTGAACATGTGGGATTTTGTTGCCATCATTGTCTGCATTTCTGGTATTGTTGTTGCGTACTTTGCCGATACACAGCTCCATGAGTTTGTGAGTAGAAACAATGAGTTTAAACAGCTTGGGAAGCCGGTTGTGCCCAATCTTGATGAGGGGTTGTGGTGTTATTCGCGACATCCCAACTATTTTGGAGAGCAGTTGTGGTGGTGGGGACTGGTTGTGTTTGCATGGAACCTGGGACAGGGATGGACCTTTGTCGGCTCTTTTGTCAATACAATGTGTTTGGCTTATGTGACGACGCTTGTGGAGAAGCGAATGCTGAAGCAAGATTTCAGAGCAGAAGCATACAGGCAGTATCAGAAGACTACCTCAGTGTGGATCCCTTGGTTCAAGTCATCTGCAACTGGAGAAAAAGATAAGAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas

Protein Analysis

324

Amino Acids

38.38

Weight (kDa)

8.72

Isoelectric Point (pI)

30.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1295 PF06966 66 - 305 3.1e-63 Protein of unknown function (DUF1295)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 484
AccB7I CCANNNNNTGG 1 cut(s) 228
AccII CGCG 1 cut(s) 718
AciI CCGC 2 cut(s) 316, 382
AclWI GGATC 3 cut(s) 526, 919, 932
AcuI CTGAAG 1 cut(s) 887
AfaI GTAC 2 cut(s) 443, 611
AfiI CCNNNNNNNGG 4 cut(s) 199, 228, 787, 921
AflIII ACRYGT 1 cut(s) 558
AgsI TTSAA 3 cut(s) 181, 556, 937
AjnI CCWGG 1 cut(s) 780
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AloI GAACNNNNNNTCC 2 cut(s) 404, 436
AluBI AGCT 4 cut(s) 44, 628, 667, 971
AluI AGCT 4 cut(s) 44, 628, 667, 971
AlwI GGATC 3 cut(s) 526, 919, 932
AspS9I GGNCC 1 cut(s) 795
AsuHPI GGTGA 2 cut(s) 134, 281
AvaII GGWCC 1 cut(s) 795
AxyI CCTNAGG 1 cut(s) 108
BaeGI GKGCMC 1 cut(s) 687
BamHI GGATCC 1 cut(s) 924
BbsI GAAGAC 1 cut(s) 914
BccI CCATC 2 cut(s) 584, 786
BceAI ACGGC 1 cut(s) 460
BciT130I CCWGG 1 cut(s) 782
BfaI CTAG 1 cut(s) 41
BfuAI ACCTGC 1 cut(s) 484
Bme1390I CCNGG 1 cut(s) 782
Bme18I GGWCC 1 cut(s) 795
BmgT120I GGNCC 1 cut(s) 795
BmiI GGNNCC 3 cut(s) 403, 779, 926
BmrFI CCNGG 1 cut(s) 782
BoxI GACNNNNGTC 1 cut(s) 800
BpiI GAAGAC 1 cut(s) 914
BplI GAGNNNNNCTC 2 cut(s) 101, 133
BpmI CTGGAG 3 cut(s) 205, 436, 972
Bsa29I ATCGAT 1 cut(s) 237
BsaJI CCNNGG 2 cut(s) 781, 929
BsaWI WCCGGW 1 cut(s) 282
Bsc4I CCNNNNNNNGG 4 cut(s) 199, 228, 787, 921
Bse118I RCCGGY 1 cut(s) 676
Bse1I ACTGG 5 cut(s) 96, 314, 419, 765, 955
Bse21I CCTNAGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 401
BseBI CCWGG 1 cut(s) 782
BseCI ATCGAT 1 cut(s) 237
BseDI CCNNGG 2 cut(s) 781, 929
BseGI GGATG 3 cut(s) 237, 721, 797
BseLI CCNNNNNNNGG 4 cut(s) 199, 228, 787, 921
BseMI GCAATG 1 cut(s) 401
BseMII CTCAG 3 cut(s) 99, 503, 930
BseNI ACTGG 5 cut(s) 96, 314, 419, 765, 955
BseSI GKGCMC 1 cut(s) 687
Bsh1236I CGCG 1 cut(s) 718
BshVI ATCGAT 1 cut(s) 237
BsiSI CCGG 2 cut(s) 283, 677
BslFI GGGAC 2 cut(s) 771, 798
BslI CCNNNNNNNGG 4 cut(s) 199, 228, 787, 921
BsmFI GGGAC 2 cut(s) 771, 798
BsmI GAATGC 1 cut(s) 867
Bsp1286I GDGCHC 1 cut(s) 687
Bsp143I GATC 3 cut(s) 234, 531, 924
Bsp68I TCGCGA 1 cut(s) 718
BspACI CCGC 2 cut(s) 316, 382
BspCNI CTCAG 3 cut(s) 100, 502, 929
BspDI ATCGAT 1 cut(s) 237
BspFNI CGCG 1 cut(s) 718
BspLI GGNNCC 3 cut(s) 403, 779, 926
BspMI ACCTGC 1 cut(s) 484
BspPI GGATC 3 cut(s) 526, 919, 932
BsrDI GCAATG 1 cut(s) 401
BsrFI RCCGGY 1 cut(s) 676
BsrI ACTGG 5 cut(s) 96, 314, 419, 765, 955
BssAI RCCGGY 1 cut(s) 676
BssECI CCNNGG 2 cut(s) 781, 929
BssMI GATC 3 cut(s) 234, 531, 924
BssT1I CCWWGG 1 cut(s) 929
Bst2UI CCWGG 1 cut(s) 782
Bst4CI ACNGT 2 cut(s) 253, 441
Bst6I CTCTTC 4 cut(s) 68, 156, 176, 200
BstAPI GCANNNNNTGC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 449
BstDEI CTNAG 3 cut(s) 108, 489, 916
BstENI CCTNNNNNAGG 1 cut(s) 785
BstF5I GGATG 3 cut(s) 237, 721, 797
BstFNI CGCG 1 cut(s) 718
BstKTI GATC 3 cut(s) 237, 534, 927
BstMBI GATC 3 cut(s) 234, 531, 924
BstMWI GCNNNNNNNGC 5 cut(s) 32, 41, 614, 673, 682
BstNI CCWGG 1 cut(s) 782
BstNSI RCATGY 1 cut(s) 562
BstPAI GACNNNNGTC 1 cut(s) 800
BstSCI CCNGG 1 cut(s) 780
BstSLI GKGCMC 1 cut(s) 687
BstUI CGCG 1 cut(s) 718
BstV2I GAAGAC 1 cut(s) 914
BstX2I RGATCY 1 cut(s) 924
BstYI RGATCY 1 cut(s) 924
Bsu15I ATCGAT 1 cut(s) 237
Bsu36I CCTNAGG 1 cut(s) 108
BsuTUI ATCGAT 1 cut(s) 237
BtsCI GGATG 3 cut(s) 237, 721, 797
BtsI GCAGTG 2 cut(s) 33, 458
BtsIMutI CAGTG 4 cut(s) 33, 423, 458, 924
BtuMI TCGCGA 1 cut(s) 718
BveI ACCTGC 1 cut(s) 484
Cac8I GCNNGC 1 cut(s) 449
Cfr10I RCCGGY 1 cut(s) 676
Cfr13I GGNCC 1 cut(s) 795
ClaI ATCGAT 1 cut(s) 237
CseI GACGC 1 cut(s) 853
Csp6I GTAC 2 cut(s) 442, 610
CviAII CATG 4 cut(s) 132, 559, 632, 774
CviQI GTAC 2 cut(s) 442, 610
DdeI CTNAG 3 cut(s) 108, 489, 916
DpnI GATC 3 cut(s) 236, 533, 926
DpnII GATC 3 cut(s) 234, 531, 924
DraI TTTAAA 1 cut(s) 661
Eam1104I CTCTTC 4 cut(s) 68, 156, 176, 200
EarI CTCTTC 4 cut(s) 68, 156, 176, 200
Eco130I CCWWGG 1 cut(s) 929
Eco47I GGWCC 1 cut(s) 795
Eco57I CTGAAG 1 cut(s) 887
Eco81I CCTNAGG 1 cut(s) 108
EcoNI CCTNNNNNAGG 1 cut(s) 785
EcoRII CCWGG 1 cut(s) 780
EcoT14I CCWWGG 1 cut(s) 929
ErhI CCWWGG 1 cut(s) 929
FaeI CATG 4 cut(s) 135, 562, 635, 777
FaqI GGGAC 2 cut(s) 771, 798
FatI CATG 4 cut(s) 131, 558, 631, 773
FauI CCCGC 1 cut(s) 375
FokI GGATG 3 cut(s) 244, 708, 804
FspBI CTAG 1 cut(s) 41
GsuI CTGGAG 3 cut(s) 205, 436, 972
HapII CCGG 2 cut(s) 283, 677
HgaI GACGC 1 cut(s) 853
Hin1II CATG 4 cut(s) 135, 562, 635, 777
HincII GTYRAC 2 cut(s) 321, 339
HindII GTYRAC 2 cut(s) 321, 339
HindIII AAGCTT 1 cut(s) 969
HinfI GANTC 1 cut(s) 286
HpaII CCGG 2 cut(s) 283, 677
HphI GGTGA 2 cut(s) 134, 281
Hpy166II GTNNAC 3 cut(s) 321, 339, 423
Hpy188I TCNGA 3 cut(s) 504, 881, 906
Hpy188III TCNNGA 3 cut(s) 19, 692, 717
Hpy8I GTNNAC 3 cut(s) 321, 339, 423
Hpy99I CGWCG 1 cut(s) 847
HpyAV CCTTC 1 cut(s) 527
HpyCH4III ACNGT 2 cut(s) 253, 441
HpyCH4IV ACGT 2 cut(s) 15, 183
HpyCH4V TGCA 4 cut(s) 35, 588, 773, 947
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 41, 614, 673, 682
HpyF3I CTNAG 3 cut(s) 108, 489, 916
HpySE526I ACGT 2 cut(s) 15, 183
Hsp92II CATG 4 cut(s) 135, 562, 635, 777
Kzo9I GATC 3 cut(s) 234, 531, 924
LmnI GCTCC 4 cut(s) 49, 351, 401, 633
MaeI CTAG 1 cut(s) 41
MaeII ACGT 2 cut(s) 15, 183
MaeIII GTNAC 1 cut(s) 838
MalI GATC 3 cut(s) 236, 533, 926
MboI GATC 3 cut(s) 234, 531, 924
MboII GAAGA 7 cut(s) 55, 143, 163, 166, 169, 187, 919
MflI RGATCY 1 cut(s) 924
MhlI GDGCHC 1 cut(s) 687
MluCI AATT 1 cut(s) 388
MlyI GAGTC 1 cut(s) 280
MseI TTAA 3 cut(s) 306, 543, 660
MslI CAYNNNNRTG 1 cut(s) 428
MspI CCGG 2 cut(s) 283, 677
MspR9I CCNGG 1 cut(s) 782
MssI GTTTAAAC 1 cut(s) 661
Mva1269I GAATGC 1 cut(s) 867
MvaI CCWGG 1 cut(s) 782
MvnI CGCG 1 cut(s) 718
MwoI GCNNNNNNNGC 5 cut(s) 32, 41, 614, 673, 682
NdeII GATC 3 cut(s) 234, 531, 924
NlaIII CATG 4 cut(s) 135, 562, 635, 777
NlaIV GGNNCC 3 cut(s) 403, 779, 926
NmuCI GTSAC 1 cut(s) 838
NruI TCGCGA 1 cut(s) 718
NspI RCATGY 1 cut(s) 562
PciI ACATGT 1 cut(s) 558
PctI GAATGC 1 cut(s) 867
PflMI CCANNNNNTGG 1 cut(s) 228
PleI GAGTC 1 cut(s) 280
PmeI GTTTAAAC 1 cut(s) 661
PpsI GAGTC 1 cut(s) 280
PscI ACATGT 1 cut(s) 558
PshAI GACNNNNGTC 1 cut(s) 800
Psp6I CCWGG 1 cut(s) 780
PspGI CCWGG 1 cut(s) 780
PspN4I GGNNCC 3 cut(s) 403, 779, 926
PspPI GGNCC 1 cut(s) 795
PsrI GAACNNNNNNTAC 4 cut(s) 255, 287, 425, 457
PsuI RGATCY 1 cut(s) 924
RruI TCGCGA 1 cut(s) 718
RsaI GTAC 2 cut(s) 443, 611
RsaNI GTAC 2 cut(s) 442, 610
RseI CAYNNNNRTG 1 cut(s) 428
SaqAI TTAA 3 cut(s) 306, 543, 660
Sau3AI GATC 3 cut(s) 234, 531, 924
Sau96I GGNCC 1 cut(s) 795
SchI GAGTC 1 cut(s) 280
ScrFI CCNGG 1 cut(s) 782
SduI GDGCHC 1 cut(s) 687
SinI GGWCC 1 cut(s) 795
SmiMI CAYNNNNRTG 1 cut(s) 428
Sse9I AATT 1 cut(s) 388
SsiI CCGC 2 cut(s) 316, 382
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 780
StyI CCWWGG 1 cut(s) 929
TaaI ACNGT 2 cut(s) 253, 441
TaiI ACGT 2 cut(s) 18, 186
TaqI TCGA 1 cut(s) 237
TasI AATT 1 cut(s) 388
Tru1I TTAA 3 cut(s) 306, 543, 660
Tru9I TTAA 3 cut(s) 306, 543, 660
TscAI CASTG 4 cut(s) 33, 430, 458, 924
TseFI GTSAC 1 cut(s) 838
Tsp45I GTSAC 1 cut(s) 838
TspDTI ATGAA 2 cut(s) 263, 446
TspRI CASTG 4 cut(s) 33, 430, 458, 924
Van91I CCANNNNNTGG 1 cut(s) 228
VpaK11BI GGWCC 1 cut(s) 795
XagI CCTNNNNNAGG 1 cut(s) 785
XceI RCATGY 1 cut(s) 562
XcmI CCANNNNNNNNNTGG 1 cut(s) 558
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.