Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7957917.1

Orthogroup ID

OG0002230

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 352

Gene Structure 352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7957917.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

aattctatctttcagcgtcttaatgcttacgagtttgagcgccatgcttgtgccaagaccaaacatcccaataatcgcatctactttgagaatggaaagaccatccatgcagtagttgaagagctgaagaacactcctcaggacatgctctttgatgccatccaaaatgtgacagggtctcaggttaataagaagaactcccgcgtctggataggtgatgcagaattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas

Protein Analysis

76

Amino Acids

8.82

Weight (kDa)

8.11

Isoelectric Point (pI)

29.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13660 AT5G13660 AT5G13660 AT5G13660 AT5G13660 AT5G13660 AT5G13660
fragaria_vesca	FvH4_7g21830 FvH4_7g21830 FvH4_7g21830
malus_domestica	MD01G1123100.v1.1 MD07G1192800.v1.1
prunus_persica	Prupe.2G230700_v2.0.a1
pyrus_communis	pycom01g15000 pycom07g18230
rosa_chinensis	RchiOBHm_Chr1g0366111 RchiOBHm_Chr7g0232731
rosa_laevigata	RLG00000017112 RLG00000027367
rosa_multiflora	Rmu_co7957917.1_g000001 Rmu_co8165832.1_g000001 Rmu_sc0003987.1_g000004 Rmu_sc0005795.1_g000008
rosa_roxburghii	Rroxscaffold_3G00227900 Rroxscaffold_4G00290490
rosa_rugosa	Rorug01G0133500.1 Rorug01G0327400 Rorug01G0327500 Rorug01G0327600
rosa_samantha	Rh1AG335600 Rh1BG296800 Rh1CG313000 Rh1DG328700 Rh2AG150700 Rh2AG150900 Rh2BG156400 Rh2DG156300 Rh2DG156500 Rh7AG431000 Rh7AG431100 Rh7CG449600 Rh7CG449700
rosa_wichuraiana	Rw1G029770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	204
AciI	CCGC	1 cut(s)	202
AcsI	RAATTY	1 cut(s)	224
AcuI	CTGAAG	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	207
AgsI	TTSAA	1 cut(s)	119
AluBI	AGCT	1 cut(s)	124
AluI	AGCT	1 cut(s)	124
Alw26I	GTCTC	1 cut(s)	183
ApoI	RAATTY	1 cut(s)	224
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
AspLEI	GCGC	1 cut(s)	42
AsuHPI	GGTGA	1 cut(s)	227
AxyI	CCTNAGG	1 cut(s)	138
BccI	CCATC	2 cut(s)	110, 167
BcoDI	GTCTC	1 cut(s)	183
BfoI	RGCGCY	1 cut(s)	43
BmsI	GCATC	3 cut(s)	87, 145, 208
BsaI	GGTCTC	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse21I	CCTNAGG	1 cut(s)	138
BseGI	GGATG	3 cut(s)	64, 102, 159
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMII	CTCAG	2 cut(s)	152, 194
BseRI	GAGGAG	1 cut(s)	126
Bsh1236I	CGCG	1 cut(s)	204
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	1 cut(s)	183
Bso31I	GGTCTC	1 cut(s)	183
BspACI	CCGC	1 cut(s)	202
BspCNI	CTCAG	2 cut(s)	151, 193
BspFNI	CGCG	1 cut(s)	204
BspQI	GCTCTTC	1 cut(s)	114
BspTNI	GGTCTC	1 cut(s)	183
Bst6I	CTCTTC	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	138, 180
BstF5I	GGATG	3 cut(s)	64, 102, 159
BstFNI	CGCG	1 cut(s)	204
BstH2I	RGCGCY	1 cut(s)	43
BstHHI	GCGC	1 cut(s)	42
BstMAI	GTCTC	1 cut(s)	183
BstNSI	RCATGY	1 cut(s)	148
BstUI	CGCG	1 cut(s)	204
Bsu36I	CCTNAGG	1 cut(s)	138
BtsCI	GGATG	3 cut(s)	64, 102, 159
CfoI	GCGC	1 cut(s)	42
CseI	GACGC	2 cut(s)	5, 193
CviAII	CATG	3 cut(s)	44, 107, 145
CviJI	RGCY	1 cut(s)	124
CviKI_1	RGCY	1 cut(s)	124
DdeI	CTNAG	2 cut(s)	138, 180
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco31I	GGTCTC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	146
Eco81I	CCTNAGG	1 cut(s)	138
FaeI	CATG	3 cut(s)	47, 110, 148
FaiI	YATR	3 cut(s)	45, 108, 146
FatI	CATG	3 cut(s)	43, 106, 144
FauI	CCCGC	1 cut(s)	209
FokI	GGATG	3 cut(s)	51, 89, 146
GlaI	GCGC	1 cut(s)	41
HaeII	RGCGCY	1 cut(s)	43
HgaI	GACGC	2 cut(s)	5, 193
HhaI	GCGC	1 cut(s)	42
Hin1II	CATG	3 cut(s)	47, 110, 148
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HphI	GGTGA	1 cut(s)	227
Hpy188III	TCNNGA	2 cut(s)	140, 208
HpyCH4V	TGCA	2 cut(s)	110, 221
HpyF3I	CTNAG	2 cut(s)	138, 180
Hsp92II	CATG	3 cut(s)	47, 110, 148
HspAI	GCGC	1 cut(s)	40
LguI	GCTCTTC	1 cut(s)	114
LpnPI	CCDG	4 cut(s)	125, 159, 167, 193
LweI	GCATC	3 cut(s)	87, 145, 208
MaeIII	GTNAC	1 cut(s)	169
MboII	GAAGA	3 cut(s)	131, 139, 205
MluCI	AATT	1 cut(s)	224
MnlI	CCTC	1 cut(s)	147
MseI	TTAA	2 cut(s)	21, 186
MslI	CAYNNNNRTG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	204
NlaIII	CATG	3 cut(s)	47, 110, 148
NmuCI	GTSAC	1 cut(s)	169
NspI	RCATGY	1 cut(s)	148
PciSI	GCTCTTC	1 cut(s)	114
PflFI	GACNNNGTC	1 cut(s)	175
PsyI	GACNNNGTC	1 cut(s)	175
RseI	CAYNNNNRTG	1 cut(s)	48
SapI	GCTCTTC	1 cut(s)	114
SaqAI	TTAA	2 cut(s)	21, 186
SetI	ASST	3 cut(s)	126, 186, 217
SfaNI	GCATC	3 cut(s)	87, 145, 208
SmiMI	CAYNNNNRTG	1 cut(s)	48
Sse9I	AATT	1 cut(s)	224
SsiI	CCGC	1 cut(s)	202
TasI	AATT	1 cut(s)	224
Tru1I	TTAA	2 cut(s)	21, 186
Tru9I	TTAA	2 cut(s)	21, 186
TseFI	GTSAC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	169
Tth111I	GACNNNGTC	1 cut(s)	175
XapI	RAATTY	1 cut(s)	224
XceI	RCATGY	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.