Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002644

Physical Location & Seq

Genomic Coordinates Forward (+)

4967011 .. 4968092

Gene Structure 1082 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAAGTCCGGTCAGGCTGAAATCATGGAAACAAGCAAAGGTATCCAAAAGAGCGGTCTGATGAGCAGAAGGATCGCGATTCTTGAGTTTATCCTCAGGATTGTTGCATTCTTCAACACTATAGGTAGTGCAATCCTCATGGGAACCACACACGAAACTCTGCCTTTCTTTACTCAATTCATACGGTTCCAAGCAGAATACAACGACCTTCCAGCCTTAACGTTTTTCGTGGTTGCAAATGCTGTTGTGAGTGGTTACCTCATCTTGTCTCTAACTTTGGCCTTTGTACACATCGTCAAGAGAAAGACTCAGAACACTAGAATTCTTCTTATCATCCTTGATGTGGCAATGTTGGGTCTTCTAACTTCTGGAGCATCCTCAGCAGCAGCCATTGTCTACTTGGCACACAATGGGAACAATAAAACAAACTGGTTTGCTATTTGTCAACAGTTCAACTCCTTCTGTGAGCGTATCTCCGGTTCTTTGATTGGATCTTTCATTGCCATTGTCCTCCTCATTCTTCTTATTCTCCTATCAGCCATTGCTCTTTCTCGACGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007043 GO:0008150 GO:0009505 GO:0009531 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030312 GO:0034329 GO:0034330 GO:0042545 GO:0042802 GO:0042803 GO:0044085 GO:0044426 GO:0044462 GO:0044464 GO:0045216 GO:0045229 GO:0046983 GO:0048037 GO:0048226 GO:0051536 GO:0051540 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

187

Amino Acids

20.58

Weight (kDa)

9.93

Isoelectric Point (pI)

34.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	23 - 171	3.2e-49	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15290
fragaria_vesca	FvH4_4g31110 FvH4_6g48140
malus_domestica	MD09G1053500.v1.1 MD13G1069600.v1.1 MD13G1069700.v1.1 MD16G1070000.v1.1
prunus_persica	Prupe.1G277100_v2.0.a1 Prupe.1G277100_v2.0.a1 Prupe.3G264800_v2.0.a1 Prupe.3G264900_v2.0.a1
pyrus_communis	pycom13g06250 pycom16g06100
rosa_chinensis	RchiOBHm_Chr2g0167481 RchiOBHm_Chr4g0439491
rosa_laevigata	RLG00000006266 RLG00000021723
rosa_multiflora	Rmu_sc0001206.1_g000035 Rmu_sc0007276.1_g000008 Rmu_sc0043018.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083450 Rroxscaffold_2G00083460 Rroxscaffold_5G00380400
rosa_rugosa	Rorug02G0530500 Rorug04G0318700 Rorug04G0318800
rosa_samantha	Rh2AG597700 Rh2AG597800 Rh2BG609200 Rh2BG609300 Rh2CG580100 Rh2CG580200 Rh2DG620500 Rh2DG620600 Rh4AG370000 Rh4BG382000 Rh4CG396600 Rh4DG376700
rosa_wichuraiana	Rw2G049740 Rw4G031550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	54
AccI	GTMKAC	1 cut(s)	396
AccII	CGCG	1 cut(s)	77
AciI	CCGC	1 cut(s)	54
AclI	AACGTT	1 cut(s)	221
AclWI	GGATC	2 cut(s)	80, 499
AcsI	RAATTY	1 cut(s)	321
AcyI	GRCGYC	1 cut(s)	556
AfaI	GTAC	1 cut(s)	288
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgsI	TTSAA	2 cut(s)	115, 454
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	2 cut(s)	80, 499
AoxI	GGCC	1 cut(s)	279
ApeKI	GCWGC	2 cut(s)	383, 386
ApoI	RAATTY	1 cut(s)	321
ArsI	GACNNNNNNTTYG	2 cut(s)	40, 72
AxyI	CCTNAGG	1 cut(s)	95
BbsI	GAAGAC	1 cut(s)	350
BbvCI	CCTCAGC	1 cut(s)	379
BbvI	GCAGC	2 cut(s)	395, 398
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BciVI	GTATCC	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	120
BfuI	GTATCC	1 cut(s)	53
BisI	GCNGC	2 cut(s)	384, 387
BlsI	GCNGC	2 cut(s)	385, 388
BmiI	GGNNCC	2 cut(s)	145, 188
BmsI	GCATC	1 cut(s)	383
BpiI	GAAGAC	1 cut(s)	350
BplI	GAGNNNNNCTC	4 cut(s)	292, 324, 458, 490
BpmI	CTGGAG	1 cut(s)	390
Bpu10I	CCTNAGC	1 cut(s)	379
BpuEI	CTTGAG	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	556
BsaWI	WCCGGW	2 cut(s)	8, 476
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse1I	ACTGG	1 cut(s)	434
Bse21I	CCTNAGG	1 cut(s)	95
Bse3DI	GCAATG	3 cut(s)	354, 498, 540
BseGI	GGATG	2 cut(s)	333, 374
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMI	GCAATG	3 cut(s)	354, 498, 540
BseMII	CTCAG	3 cut(s)	109, 323, 393
BseNI	ACTGG	1 cut(s)	434
BseRI	GAGGAG	1 cut(s)	503
BseXI	GCAGC	2 cut(s)	395, 398
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	281
BsiSI	CCGG	2 cut(s)	9, 477
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	1 cut(s)	273
BsmI	GAATGC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	281
Bsp1407I	TGTACA	1 cut(s)	286
Bsp143I	GATC	2 cut(s)	72, 491
Bsp68I	TCGCGA	1 cut(s)	77
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	3 cut(s)	108, 322, 392
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	2 cut(s)	145, 188
BspPI	GGATC	2 cut(s)	80, 499
BsrBI	CCGCTC	1 cut(s)	54
BsrDI	GCAATG	3 cut(s)	354, 498, 540
BsrGI	TGTACA	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	434
BssMI	GATC	2 cut(s)	72, 491
BssNI	GRCGYC	1 cut(s)	556
Bst4CI	ACNGT	2 cut(s)	186, 450
BstACI	GRCGYC	1 cut(s)	556
BstAUI	TGTACA	1 cut(s)	286
BstDEI	CTNAG	3 cut(s)	95, 309, 379
BstEII	GGTNACC	1 cut(s)	254
BstF5I	GGATG	2 cut(s)	333, 374
BstFNI	CGCG	1 cut(s)	77
BstKTI	GATC	2 cut(s)	75, 494
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	2 cut(s)	72, 491
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstPI	GGTNACC	1 cut(s)	254
BstSFI	CTRYAG	1 cut(s)	120
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	395, 398
BstV2I	GAAGAC	1 cut(s)	350
BstX2I	RGATCY	1 cut(s)	491
BstYI	RGATCY	1 cut(s)	491
Bsu36I	CCTNAGG	1 cut(s)	95
BsuI	GTATCC	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	281
BtsCI	GGATG	2 cut(s)	333, 374
BtuMI	TCGCGA	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	287
CviAII	CATG	2 cut(s)	25, 139
CviJI	RGCY	5 cut(s)	17, 215, 281, 389, 539
CviKI_1	RGCY	5 cut(s)	17, 215, 281, 389, 539
CviQI	GTAC	1 cut(s)	287
DdeI	CTNAG	3 cut(s)	95, 309, 379
DpnI	GATC	2 cut(s)	74, 493
DpnII	GATC	2 cut(s)	72, 491
Eco81I	CCTNAGG	1 cut(s)	95
Eco91I	GGTNACC	1 cut(s)	254
EcoO65I	GGTNACC	1 cut(s)	254
EcoRI	GAATTC	1 cut(s)	321
FaeI	CATG	2 cut(s)	28, 142
FaiI	YATR	4 cut(s)	26, 122, 140, 182
FatI	CATG	2 cut(s)	24, 138
FblI	GTMKAC	1 cut(s)	396
Fnu4HI	GCNGC	2 cut(s)	384, 387
FokI	GGATG	2 cut(s)	320, 361
Fsp4HI	GCNGC	2 cut(s)	384, 387
FspBI	CTAG	1 cut(s)	318
GluI	GCNGC	2 cut(s)	384, 387
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	2 cut(s)	9, 477
Hin1I	GRCGYC	1 cut(s)	556
Hin1II	CATG	2 cut(s)	28, 142
HincII	GTYRAC	1 cut(s)	446
HindII	GTYRAC	1 cut(s)	446
HinfI	GANTC	2 cut(s)	79, 307
HpaII	CCGG	2 cut(s)	9, 477
Hpy166II	GTNNAC	3 cut(s)	289, 397, 446
Hpy188I	TCNGA	2 cut(s)	60, 312
Hpy188III	TCNNGA	6 cut(s)	76, 83, 97, 298, 369, 552
Hpy8I	GTNNAC	3 cut(s)	289, 397, 446
Hpy99I	CGWCG	1 cut(s)	558
HpyAV	CCTTC	3 cut(s)	63, 218, 469
HpyCH4III	ACNGT	2 cut(s)	186, 450
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	3 cut(s)	107, 131, 236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpyF3I	CTNAG	3 cut(s)	95, 309, 379
HpySE526I	ACGT	1 cut(s)	221
Hsp92I	GRCGYC	1 cut(s)	556
Hsp92II	CATG	2 cut(s)	28, 142
Kzo9I	GATC	2 cut(s)	72, 491
LmnI	GCTCC	1 cut(s)	371
LpnPI	CCDG	6 cut(s)	22, 82, 225, 354, 415, 490
Lsp1109I	GCAGC	2 cut(s)	395, 398
LweI	GCATC	1 cut(s)	383
MaeI	CTAG	1 cut(s)	318
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	2 cut(s)	74, 493
MbiI	CCGCTC	1 cut(s)	54
MboI	GATC	2 cut(s)	72, 491
MboII	GAAGA	4 cut(s)	103, 317, 350, 512
MflI	RGATCY	1 cut(s)	491
MluCI	AATT	2 cut(s)	176, 321
MlyI	GAGTC	1 cut(s)	301
MnlI	CCTC	6 cut(s)	104, 146, 269, 388, 521, 524
MseI	TTAA	1 cut(s)	218
MspI	CCGG	2 cut(s)	9, 477
Mva1269I	GAATGC	1 cut(s)	107
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	1 cut(s)	380
NdeII	GATC	2 cut(s)	72, 491
NlaIII	CATG	2 cut(s)	28, 142
NlaIV	GGNNCC	2 cut(s)	145, 188
NruI	TCGCGA	1 cut(s)	77
PctI	GAATGC	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	79
PkrI	GCNGC	2 cut(s)	385, 388
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
Psp1406I	AACGTT	1 cut(s)	221
PspEI	GGTNACC	1 cut(s)	254
PspN4I	GGNNCC	2 cut(s)	145, 188
PsrI	GAACNNNNNNTAC	2 cut(s)	463, 495
PsuI	RGATCY	1 cut(s)	491
RruI	TCGCGA	1 cut(s)	77
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
SaqAI	TTAA	1 cut(s)	218
SatI	GCNGC	2 cut(s)	384, 387
Sau3AI	GATC	2 cut(s)	72, 491
SchI	GAGTC	1 cut(s)	301
SetI	ASST	5 cut(s)	43, 127, 210, 224, 261
SfaNI	GCATC	1 cut(s)	383
SfcI	CTRYAG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	2 cut(s)	176, 321
SsiI	CCGC	1 cut(s)	54
SspMI	CTAG	1 cut(s)	318
TaaI	ACNGT	2 cut(s)	186, 450
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	1 cut(s)	553
TasI	AATT	2 cut(s)	176, 321
TatI	WGTACW	1 cut(s)	286
TfiI	GAWTC	1 cut(s)	79
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TseI	GCWGC	2 cut(s)	383, 386
TspDTI	ATGAA	3 cut(s)	17, 169, 487
XapI	RAATTY	1 cut(s)	321
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397
XmiI	GTMKAC	1 cut(s)	396
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.