Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002644

Physical Location & Seq

Genomic Coordinates Reverse (-)

77528838 .. 77531442

Gene Structure 2605 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021723

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGTGGAAGGTGGACCGAAATCAACTGTTATTATTATGTGGAAGGGATCAGGGAACGAGAATGAGGTCTTCGATGAGGACGAAGAGAAAATTTTCCGGCATGGCATAGAGGACGTTGTGGATTTGAAGTGTTTACAGTGGAATTGTGGAAGCAAGGAGCCAGTGTTTGTCCGAGAAAGGCTGAAGGAAGTAATGACTGATGCCGAAGTGTACTATATGCCTAGGTTCTTTGTGGTTGCCAATTCCATCGTATGTGCCTATCTGACGTTTTCCCTAGCTCTTTCTATCTTCCACATCATAAGAAGCAATGCAAAGAACAGTAGAATAATCTTGATCTTCTTCGACACGGGAATGCTGGCTCTTCTGACAGCAGGTGCCTCGGCCGCCACAGCTATTGTGTACTTAGCACACAAGGGGAATGCCAAGGCAAACTGGTTCGCAATCTGTCAACAATTCAATTCCTTCTGCGAACGAATCTCTGGCTCTTTGATTGGATCTTTCGTGGCAATTGTTATTTTCGTTCTCTTGATCTTAATGTCAGCTACCGCCCTTTCTCGGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007043 GO:0008150 GO:0009505 GO:0009531 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030312 GO:0034329 GO:0034330 GO:0042545 GO:0042802 GO:0042803 GO:0044085 GO:0044426 GO:0044462 GO:0044464 GO:0045216 GO:0045229 GO:0046983 GO:0048037 GO:0048226 GO:0051536 GO:0051540 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

188

Amino Acids

20.86

Weight (kDa)

6.82

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	75 - 171	4.6e-32	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15290
fragaria_vesca	FvH4_4g31110 FvH4_6g48140
malus_domestica	MD09G1053500.v1.1 MD13G1069600.v1.1 MD13G1069700.v1.1 MD16G1070000.v1.1
prunus_persica	Prupe.1G277100_v2.0.a1 Prupe.1G277100_v2.0.a1 Prupe.3G264800_v2.0.a1 Prupe.3G264900_v2.0.a1
pyrus_communis	pycom13g06250 pycom16g06100
rosa_chinensis	RchiOBHm_Chr2g0167481 RchiOBHm_Chr4g0439491
rosa_laevigata	RLG00000006266 RLG00000021723
rosa_multiflora	Rmu_sc0001206.1_g000035 Rmu_sc0007276.1_g000008 Rmu_sc0043018.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083450 Rroxscaffold_2G00083460 Rroxscaffold_5G00380400
rosa_rugosa	Rorug02G0530500 Rorug04G0318700 Rorug04G0318800
rosa_samantha	Rh2AG597700 Rh2AG597800 Rh2BG609200 Rh2BG609300 Rh2CG580100 Rh2CG580200 Rh2DG620500 Rh2DG620600 Rh4AG370000 Rh4BG382000 Rh4CG396600 Rh4DG376700
rosa_wichuraiana	Rw2G049740 Rw4G031550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	362
Acc36I	ACCTGC	1 cut(s)	362
AccB1I	GGYRCC	1 cut(s)	374
AciI	CCGC	2 cut(s)	384, 546
AclWI	GGATC	2 cut(s)	55, 502
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	1 cut(s)	90
AcuI	CTGAAG	1 cut(s)	203
AfaI	GTAC	2 cut(s)	212, 401
AfiI	CCNNNNNNNGG	1 cut(s)	555
AgsI	TTSAA	2 cut(s)	127, 457
AluBI	AGCT	3 cut(s)	278, 392, 542
AluI	AGCT	3 cut(s)	278, 392, 542
AlwI	GGATC	2 cut(s)	55, 502
AoxI	GGCC	1 cut(s)	381
ApoI	RAATTY	1 cut(s)	90
Asp700I	GAANNNNTTC	1 cut(s)	92
AspA2I	CCTAGG	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	14
AvrII	CCTAGG	1 cut(s)	221
BanI	GGYRCC	1 cut(s)	374
BbsI	GAAGAC	1 cut(s)	61
BccI	CCATC	1 cut(s)	254
BcgI	CGANNNNNNTGC	2 cut(s)	360, 394
BfaI	CTAG	2 cut(s)	222, 275
BfuAI	ACCTGC	1 cut(s)	362
BisI	GCNGC	1 cut(s)	384
BlnI	CCTAGG	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	385
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	2 cut(s)	159, 376
BmsI	GCATC	1 cut(s)	190
BpiI	GAAGAC	1 cut(s)	61
BsaJI	CCNNGG	3 cut(s)	221, 378, 423
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	1 cut(s)	555
Bse1I	ACTGG	2 cut(s)	161, 437
Bse3DI	GCAATG	1 cut(s)	313
BseDI	CCNNGG	3 cut(s)	221, 378, 423
BseLI	CCNNNNNNNGG	1 cut(s)	555
BseMI	GCAATG	1 cut(s)	313
BseNI	ACTGG	2 cut(s)	161, 437
BseX3I	CGGCCG	1 cut(s)	381
Bsh1285I	CGRYCG	1 cut(s)	384
BshFI	GGCC	1 cut(s)	383
BshNI	GGYRCC	1 cut(s)	374
BsiEI	CGRYCG	1 cut(s)	384
BsiSI	CCGG	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	555
BsmI	GAATGC	2 cut(s)	357, 424
BsnI	GGCC	1 cut(s)	383
Bsp143I	GATC	4 cut(s)	47, 333, 494, 528
BspACI	CCGC	2 cut(s)	384, 546
BspANI	GGCC	1 cut(s)	383
BspLI	GGNNCC	2 cut(s)	159, 376
BspMI	ACCTGC	1 cut(s)	362
BspPI	GGATC	2 cut(s)	55, 502
BspQI	GCTCTTC	1 cut(s)	366
BspT107I	GGYRCC	1 cut(s)	374
BsrDI	GCAATG	1 cut(s)	313
BsrI	ACTGG	2 cut(s)	161, 437
BssECI	CCNNGG	3 cut(s)	221, 378, 423
BssMI	GATC	4 cut(s)	47, 333, 494, 528
BssT1I	CCWWGG	2 cut(s)	221, 423
Bst4CI	ACNGT	3 cut(s)	28, 138, 320
Bst6I	CTCTTC	2 cut(s)	78, 366
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	1 cut(s)	403
BstKTI	GATC	4 cut(s)	50, 336, 497, 531
BstMBI	GATC	4 cut(s)	47, 333, 494, 528
BstMCI	CGRYCG	1 cut(s)	384
BstMWI	GCNNNNNNNGC	2 cut(s)	383, 389
BstV2I	GAAGAC	1 cut(s)	61
BstX2I	RGATCY	1 cut(s)	494
BstYI	RGATCY	1 cut(s)	494
BstZI	CGGCCG	1 cut(s)	381
BsuRI	GGCC	1 cut(s)	383
BtsIMutI	CAGTG	2 cut(s)	143, 168
BveI	ACCTGC	1 cut(s)	362
Cac8I	GCNNGC	1 cut(s)	357
Cfr13I	GGNCC	1 cut(s)	14
Csp6I	GTAC	2 cut(s)	211, 400
CspCI	CAANNNNNGTGG	2 cut(s)	376, 411
CviAII	CATG	1 cut(s)	101
CviJI	RGCY	8 cut(s)	160, 181, 278, 359, 383, 392, 483, 542
CviKI_1	RGCY	8 cut(s)	160, 181, 278, 359, 383, 392, 483, 542
CviQI	GTAC	2 cut(s)	211, 400
DdeI	CTNAG	1 cut(s)	403
DpnI	GATC	4 cut(s)	49, 335, 496, 530
DpnII	GATC	4 cut(s)	47, 333, 494, 528
EaeI	YGGCCR	1 cut(s)	381
EagI	CGGCCG	1 cut(s)	381
Eam1104I	CTCTTC	2 cut(s)	78, 366
EarI	CTCTTC	2 cut(s)	78, 366
EclXI	CGGCCG	1 cut(s)	381
Eco130I	CCWWGG	2 cut(s)	221, 423
Eco47I	GGWCC	1 cut(s)	14
Eco52I	CGGCCG	1 cut(s)	381
Eco57I	CTGAAG	1 cut(s)	203
EcoT14I	CCWWGG	2 cut(s)	221, 423
ErhI	CCWWGG	2 cut(s)	221, 423
FaeI	CATG	1 cut(s)	104
FaiI	YATR	7 cut(s)	38, 102, 107, 216, 218, 253, 299
FatI	CATG	1 cut(s)	100
Fnu4HI	GCNGC	1 cut(s)	384
Fsp4HI	GCNGC	1 cut(s)	384
FspBI	CTAG	2 cut(s)	222, 275
GluI	GCNGC	1 cut(s)	384
HaeIII	GGCC	1 cut(s)	383
HapII	CCGG	1 cut(s)	97
Hin1II	CATG	1 cut(s)	104
HincII	GTYRAC	1 cut(s)	449
HindII	GTYRAC	1 cut(s)	449
HinfI	GANTC	1 cut(s)	474
HpaII	CCGG	1 cut(s)	97
Hpy166II	GTNNAC	5 cut(s)	14, 134, 211, 400, 449
Hpy188I	TCNGA	3 cut(s)	173, 264, 366
Hpy188III	TCNNGA	2 cut(s)	331, 526
Hpy8I	GTNNAC	5 cut(s)	14, 134, 211, 400, 449
HpyAV	CCTTC	3 cut(s)	37, 178, 472
HpyCH4III	ACNGT	3 cut(s)	28, 138, 320
HpyCH4IV	ACGT	2 cut(s)	114, 266
HpyCH4V	TGCA	1 cut(s)	311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	383, 389
HpyF3I	CTNAG	1 cut(s)	403
HpySE526I	ACGT	2 cut(s)	114, 266
Hsp92II	CATG	1 cut(s)	104
Kzo9I	GATC	4 cut(s)	47, 333, 494, 528
LguI	GCTCTTC	1 cut(s)	366
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	7 cut(s)	36, 110, 174, 341, 357, 418, 465
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	2 cut(s)	222, 275
MaeII	ACGT	2 cut(s)	114, 266
MalI	GATC	4 cut(s)	49, 335, 496, 530
MboI	GATC	4 cut(s)	47, 333, 494, 528
MboII	GAAGA	6 cut(s)	61, 95, 280, 328, 331, 353
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	1 cut(s)	494
MluCI	AATT	6 cut(s)	90, 142, 241, 452, 457, 507
MnlI	CCTC	4 cut(s)	58, 70, 103, 388
MroXI	GAANNNNTTC	1 cut(s)	92
MseI	TTAA	1 cut(s)	533
MslI	CAYNNNNRTG	1 cut(s)	350
MspI	CCGG	1 cut(s)	97
MunI	CAATTG	1 cut(s)	507
Mva1269I	GAATGC	2 cut(s)	357, 424
MwoI	GCNNNNNNNGC	2 cut(s)	383, 389
NdeII	GATC	4 cut(s)	47, 333, 494, 528
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	2 cut(s)	159, 376
NmeAIII	GCCGAG	2 cut(s)	359, 535
PaqCI	CACCTGC	1 cut(s)	362
PciSI	GCTCTTC	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PctI	GAATGC	2 cut(s)	357, 424
PdmI	GAANNNNTTC	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	474
PkrI	GCNGC	1 cut(s)	385
PspN4I	GGNNCC	2 cut(s)	159, 376
PspPI	GGNCC	1 cut(s)	14
PsuI	RGATCY	1 cut(s)	494
RsaI	GTAC	2 cut(s)	212, 401
RsaNI	GTAC	2 cut(s)	211, 400
RseI	CAYNNNNRTG	1 cut(s)	350
SapI	GCTCTTC	1 cut(s)	366
SaqAI	TTAA	1 cut(s)	533
SatI	GCNGC	1 cut(s)	384
Sau3AI	GATC	4 cut(s)	47, 333, 494, 528
Sau96I	GGNCC	1 cut(s)	14
SetI	ASST	9 cut(s)	13, 69, 117, 227, 269, 280, 376, 394, 544
SfaNI	GCATC	1 cut(s)	190
SinI	GGWCC	1 cut(s)	14
SmiMI	CAYNNNNRTG	1 cut(s)	350
Sse9I	AATT	6 cut(s)	90, 142, 241, 452, 457, 507
SsiI	CCGC	2 cut(s)	384, 546
SspMI	CTAG	2 cut(s)	222, 275
StyI	CCWWGG	2 cut(s)	221, 423
TaaI	ACNGT	3 cut(s)	28, 138, 320
TaiI	ACGT	2 cut(s)	117, 269
TaqI	TCGA	2 cut(s)	72, 342
TaqII	GACCGA	1 cut(s)	31
TasI	AATT	6 cut(s)	90, 142, 241, 452, 457, 507
TatI	WGTACW	2 cut(s)	210, 399
TauI	GCSGC	1 cut(s)	386
TfiI	GAWTC	1 cut(s)	474
Tru1I	TTAA	1 cut(s)	533
Tru9I	TTAA	1 cut(s)	533
TscAI	CASTG	2 cut(s)	143, 168
TspRI	CASTG	2 cut(s)	143, 168
VpaK11BI	GGWCC	1 cut(s)	14
XapI	RAATTY	1 cut(s)	90
XmaJI	CCTAGG	1 cut(s)	221
XmnI	GAANNNNTTC	1 cut(s)	92
XspI	CTAG	2 cut(s)	222, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.