Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002644

Physical Location & Seq

Genomic Coordinates Reverse (-)

36311444 .. 36312758

Gene Structure 1315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAAGGGAGCAGCAGCTATGGAGATTGGTGAGTCCAAAATCGGTTCAGCCCCAAGAAGCGGGGTGAACAGAGGCGCAGCGATACTCGACTTCATTCTAAGGATAATAGCGTTTCTTGGTACCTTAGCGAGTGCTATAGCTATGGGAACAACCAGGGAAAGACTTCCATTCTTCACACAGTTCCTTCAGTTCAGGGCTGAGTATGACGATCTTCCAACATTTACGTTCTTTGTGGTTGCCAATTCCATCGTATGTGTCTATCTGATGTTTTCCCTAGCTCTTTCCATCTTTCACATCCTAAGAAGCCATGCAAAGAACAGTAGAATTATCTTGATCTTCTTCGACACGGGAATGCTGGCTCTTCTGACATCAGGTGCCTCGGCCGCCACAGCTATTGTGTACTTAGCACACAAGGGGAATGCCAAAGCCAACTGGTTCGCAATCTGTCAACAATTCAATTCCTTCTGCGAACGAATCTCTGGCTCTTTGATCGGATCTTTCGTGGCAATTGTTATTTTCATTCTCTTGATCTTGATGTCAGCTGCAGCCCTTTCTCGGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007043 GO:0008150 GO:0009505 GO:0009531 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030312 GO:0034329 GO:0034330 GO:0042545 GO:0042802 GO:0042803 GO:0044085 GO:0044426 GO:0044462 GO:0044464 GO:0045216 GO:0045229 GO:0046983 GO:0048037 GO:0048226 GO:0051536 GO:0051540 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

188

Amino Acids

20.34

Weight (kDa)

9.85

Isoelectric Point (pI)

33.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	24 - 171	2.9e-48	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15290
fragaria_vesca	FvH4_4g31110 FvH4_6g48140
malus_domestica	MD09G1053500.v1.1 MD13G1069600.v1.1 MD13G1069700.v1.1 MD16G1070000.v1.1
prunus_persica	Prupe.1G277100_v2.0.a1 Prupe.1G277100_v2.0.a1 Prupe.3G264800_v2.0.a1 Prupe.3G264900_v2.0.a1
pyrus_communis	pycom13g06250 pycom16g06100
rosa_chinensis	RchiOBHm_Chr2g0167481 RchiOBHm_Chr4g0439491
rosa_laevigata	RLG00000006266 RLG00000021723
rosa_multiflora	Rmu_sc0001206.1_g000035 Rmu_sc0007276.1_g000008 Rmu_sc0043018.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083450 Rroxscaffold_2G00083460 Rroxscaffold_5G00380400
rosa_rugosa	Rorug02G0530500 Rorug04G0318700 Rorug04G0318800
rosa_samantha	Rh2AG597700 Rh2AG597800 Rh2BG609200 Rh2BG609300 Rh2CG580100 Rh2CG580200 Rh2DG620500 Rh2DG620600 Rh4AG370000 Rh4BG382000 Rh4CG396600 Rh4DG376700
rosa_wichuraiana	Rw2G049740 Rw4G031550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	119
AccB1I	GGYRCC	2 cut(s)	119, 374
AciI	CCGC	2 cut(s)	60, 384
AclWI	GGATC	1 cut(s)	502
AcoI	YGGCCR	1 cut(s)	381
AcuI	CTGAAG	1 cut(s)	170
AfaI	GTAC	2 cut(s)	121, 401
AfiI	CCNNNNNNNGG	2 cut(s)	59, 555
AgsI	TTSAA	1 cut(s)	457
AjnI	CCWGG	1 cut(s)	152
AluBI	AGCT	5 cut(s)	17, 140, 278, 392, 542
AluI	AGCT	5 cut(s)	17, 140, 278, 392, 542
AlwI	GGATC	1 cut(s)	502
AoxI	GGCC	1 cut(s)	381
ApeKI	GCWGC	5 cut(s)	11, 14, 77, 542, 545
Asp700I	GAANNNNTTC	1 cut(s)	162
Asp718I	GGTACC	1 cut(s)	119
AspLEI	GCGC	1 cut(s)	77
AsuHPI	GGTGA	2 cut(s)	41, 76
BanI	GGYRCC	2 cut(s)	119, 374
BbvI	GCAGC	5 cut(s)	23, 26, 89, 529, 557
BccI	CCATC	2 cut(s)	254, 293
BciT130I	CCWGG	1 cut(s)	154
BfaI	CTAG	1 cut(s)	275
BfmI	CTRYAG	2 cut(s)	135, 543
BisI	GCNGC	6 cut(s)	12, 15, 78, 384, 543, 546
BlsI	GCNGC	6 cut(s)	13, 16, 79, 385, 544, 547
Bme1390I	CCNGG	1 cut(s)	154
BmiI	GGNNCC	2 cut(s)	121, 376
BmrFI	CCNGG	1 cut(s)	154
Bpu10I	CCTNAGC	1 cut(s)	124
BsaJI	CCNNGG	2 cut(s)	153, 378
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 555
Bse1I	ACTGG	1 cut(s)	437
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	2 cut(s)	153, 378
BseGI	GGATG	1 cut(s)	294
BseLI	CCNNNNNNNGG	2 cut(s)	59, 555
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	1 cut(s)	437
BseX3I	CGGCCG	1 cut(s)	381
BseXI	GCAGC	5 cut(s)	23, 26, 89, 529, 557
Bsh1285I	CGRYCG	1 cut(s)	384
BshFI	GGCC	1 cut(s)	383
BshNI	GGYRCC	2 cut(s)	119, 374
BsiEI	CGRYCG	1 cut(s)	384
BslI	CCNNNNNNNGG	2 cut(s)	59, 555
BsmI	GAATGC	2 cut(s)	357, 424
BsnI	GGCC	1 cut(s)	383
Bsp143I	GATC	5 cut(s)	208, 333, 489, 494, 528
BspACI	CCGC	2 cut(s)	60, 384
BspANI	GGCC	1 cut(s)	383
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	2 cut(s)	121, 376
BspMAI	CTGCAG	1 cut(s)	547
BspPI	GGATC	1 cut(s)	502
BspQI	GCTCTTC	1 cut(s)	366
BspT107I	GGYRCC	2 cut(s)	119, 374
BsrI	ACTGG	1 cut(s)	437
BssECI	CCNNGG	2 cut(s)	153, 378
BssMI	GATC	5 cut(s)	208, 333, 489, 494, 528
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	2 cut(s)	180, 320
Bst6I	CTCTTC	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	5 cut(s)	98, 124, 198, 299, 403
BstF5I	GGATG	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	5 cut(s)	211, 336, 492, 497, 531
BstMBI	GATC	5 cut(s)	208, 333, 489, 494, 528
BstMCI	CGRYCG	1 cut(s)	384
BstMWI	GCNNNNNNNGC	2 cut(s)	383, 389
BstNI	CCWGG	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	152
BstSFI	CTRYAG	2 cut(s)	135, 543
BstV1I	GCAGC	5 cut(s)	23, 26, 89, 529, 557
BstX2I	RGATCY	1 cut(s)	494
BstYI	RGATCY	1 cut(s)	494
BstZI	CGGCCG	1 cut(s)	381
BsuRI	GGCC	1 cut(s)	383
BtsCI	GGATG	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	357
CfoI	GCGC	1 cut(s)	77
Csp6I	GTAC	2 cut(s)	120, 400
CspCI	CAANNNNNGTGG	2 cut(s)	376, 411
CviAII	CATG	1 cut(s)	308
CviQI	GTAC	2 cut(s)	120, 400
DdeI	CTNAG	5 cut(s)	98, 124, 198, 299, 403
DpnI	GATC	5 cut(s)	210, 335, 491, 496, 530
DpnII	GATC	5 cut(s)	208, 333, 489, 494, 528
EaeI	YGGCCR	1 cut(s)	381
EagI	CGGCCG	1 cut(s)	381
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
EclXI	CGGCCG	1 cut(s)	381
Eco52I	CGGCCG	1 cut(s)	381
Eco57I	CTGAAG	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	152
FaeI	CATG	1 cut(s)	311
FaiI	YATR	6 cut(s)	20, 137, 143, 204, 253, 309
FatI	CATG	1 cut(s)	307
FauI	CCCGC	1 cut(s)	53
Fnu4HI	GCNGC	6 cut(s)	12, 15, 78, 384, 543, 546
FokI	GGATG	1 cut(s)	281
Fsp4HI	GCNGC	6 cut(s)	12, 15, 78, 384, 543, 546
FspBI	CTAG	1 cut(s)	275
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	6 cut(s)	12, 15, 78, 384, 543, 546
HaeIII	GGCC	1 cut(s)	383
HhaI	GCGC	1 cut(s)	77
Hin1II	CATG	1 cut(s)	311
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HincII	GTYRAC	1 cut(s)	449
HindII	GTYRAC	1 cut(s)	449
HinfI	GANTC	2 cut(s)	32, 474
HphI	GGTGA	2 cut(s)	41, 76
Hpy166II	GTNNAC	3 cut(s)	67, 400, 449
Hpy188I	TCNGA	3 cut(s)	264, 366, 494
Hpy188III	TCNNGA	3 cut(s)	331, 526, 532
Hpy8I	GTNNAC	3 cut(s)	67, 400, 449
HpyAV	CCTTC	2 cut(s)	194, 472
HpyCH4III	ACNGT	2 cut(s)	180, 320
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	2 cut(s)	311, 545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	383, 389
HpyF3I	CTNAG	5 cut(s)	98, 124, 198, 299, 403
HpySE526I	ACGT	1 cut(s)	224
Hsp92II	CATG	1 cut(s)	311
HspAI	GCGC	1 cut(s)	75
KpnI	GGTACC	1 cut(s)	123
Kzo9I	GATC	5 cut(s)	208, 333, 489, 494, 528
LguI	GCTCTTC	1 cut(s)	366
LmnI	GCTCC	1 cut(s)	8
LpnPI	CCDG	7 cut(s)	139, 166, 178, 341, 357, 418, 465
Lsp1109I	GCAGC	5 cut(s)	23, 26, 89, 529, 557
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	1 cut(s)	224
MalI	GATC	5 cut(s)	210, 335, 491, 496, 530
MboI	GATC	5 cut(s)	208, 333, 489, 494, 528
MboII	GAAGA	5 cut(s)	163, 203, 328, 331, 353
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	1 cut(s)	494
MluCI	AATT	5 cut(s)	241, 324, 452, 457, 507
MlyI	GAGTC	1 cut(s)	41
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	2 cut(s)	65, 388
MroXI	GAANNNNTTC	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	350
MspA1I	CMGCKG	1 cut(s)	542
MspR9I	CCNGG	1 cut(s)	154
MunI	CAATTG	1 cut(s)	507
Mva1269I	GAATGC	2 cut(s)	357, 424
MvaI	CCWGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	2 cut(s)	383, 389
NdeII	GATC	5 cut(s)	208, 333, 489, 494, 528
NlaIII	CATG	1 cut(s)	311
NlaIV	GGNNCC	2 cut(s)	121, 376
NmeAIII	GCCGAG	2 cut(s)	359, 535
PciSI	GCTCTTC	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	1 cut(s)	498
PctI	GAATGC	2 cut(s)	357, 424
PdmI	GAANNNNTTC	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	474
PkrI	GCNGC	6 cut(s)	13, 16, 79, 385, 544, 547
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	2 cut(s)	121, 376
PstI	CTGCAG	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	494
PvuII	CAGCTG	1 cut(s)	542
RsaI	GTAC	2 cut(s)	121, 401
RsaNI	GTAC	2 cut(s)	120, 400
RseI	CAYNNNNRTG	1 cut(s)	350
SapI	GCTCTTC	1 cut(s)	366
SatI	GCNGC	6 cut(s)	12, 15, 78, 384, 543, 546
Sau3AI	GATC	5 cut(s)	208, 333, 489, 494, 528
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	154
SetI	ASST	8 cut(s)	19, 125, 142, 227, 280, 376, 394, 544
SfcI	CTRYAG	2 cut(s)	135, 543
SmiMI	CAYNNNNRTG	1 cut(s)	350
Sse9I	AATT	5 cut(s)	241, 324, 452, 457, 507
SsiI	CCGC	2 cut(s)	60, 384
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	1 cut(s)	152
TaaI	ACNGT	2 cut(s)	180, 320
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	2 cut(s)	87, 342
TasI	AATT	5 cut(s)	241, 324, 452, 457, 507
TatI	WGTACW	1 cut(s)	399
TauI	GCSGC	1 cut(s)	386
TfiI	GAWTC	1 cut(s)	474
TseI	GCWGC	5 cut(s)	11, 14, 77, 542, 545
TspDTI	ATGAA	3 cut(s)	17, 82, 508
XmnI	GAANNNNTTC	1 cut(s)	162
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.