Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002644

Physical Location & Seq

Genomic Coordinates Forward (+)

3545081 .. 3546104

Gene Structure 1024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1053500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAAGGCAGGAGCAGCTATTGAGCTTGGTCGTGGTGAGTCCAACTCCAAAGGGATGACTTCGACCGCTGCAAGGGCAGGGGTGAACCGAGGAGCGTCTATCCTCGACTTCATTCTACGTATAGTTGCGTTTCTAGGGACGTTGGTGAGCGCAGTCACCATGGGAACCACCCGGGAGAGGCTTCCTTTCTTCACTCAGTTCCTTCAGTTTCGGGCTGAGTACGATGATCTTCCCACATTCACGTTTTTCGTGGTTGCGAATTCCATCGTGTGCGCATATCTGGTGTTTTCTCTAGCCCTTTCCGTCTTCCACATCATACGAAGCAATGCTAAGAAGAGCAGGATTATCTTGATCTTCTTCGACACGGCAATGCTTGCTCTTCTGACGGCAGGCGCCTCCGCAGCAGCAGCTATTGTTTACTTATCACACAAGGGAAGCGCCAAGGCGAATTGGTTTGCCATCTGCCAACAATTCAACTCCTTCTGCGAGCGCATCTCTGGATCTTTAATAGGATCCTTTGTTGGAGTTGTTGTGTTCATCCTCTTAATCTTGCTGTCAGCTGCGGCCCTCTCCAGGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007043 GO:0008150 GO:0009505 GO:0009531 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030312 GO:0034329 GO:0034330 GO:0042545 GO:0042802 GO:0042803 GO:0044085 GO:0044426 GO:0044462 GO:0044464 GO:0045216 GO:0045229 GO:0046983 GO:0048037 GO:0048226 GO:0051536 GO:0051540 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

194

Amino Acids

20.78

Weight (kDa)

10.11

Isoelectric Point (pI)

28.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	30 - 177	2.2e-46	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15290
fragaria_vesca	FvH4_4g31110 FvH4_6g48140
malus_domestica	MD09G1053500.v1.1 MD13G1069600.v1.1 MD13G1069700.v1.1 MD16G1070000.v1.1
prunus_persica	Prupe.1G277100_v2.0.a1 Prupe.1G277100_v2.0.a1 Prupe.3G264800_v2.0.a1 Prupe.3G264900_v2.0.a1
pyrus_communis	pycom13g06250 pycom16g06100
rosa_chinensis	RchiOBHm_Chr2g0167481 RchiOBHm_Chr4g0439491
rosa_laevigata	RLG00000006266 RLG00000021723
rosa_multiflora	Rmu_sc0001206.1_g000035 Rmu_sc0007276.1_g000008 Rmu_sc0043018.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083450 Rroxscaffold_2G00083460 Rroxscaffold_5G00380400
rosa_rugosa	Rorug02G0530500 Rorug04G0318700 Rorug04G0318800
rosa_samantha	Rh2AG597700 Rh2AG597800 Rh2BG609200 Rh2BG609300 Rh2CG580100 Rh2CG580200 Rh2DG620500 Rh2DG620600 Rh4AG370000 Rh4BG382000 Rh4CG396600 Rh4DG376700
rosa_wichuraiana	Rw2G049740 Rw4G031550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	274
AccB1I	GGYRCC	1 cut(s)	392
AciI	CCGC	3 cut(s)	66, 399, 563
AclWI	GGATC	3 cut(s)	507, 508, 520
AcsI	RAATTY	1 cut(s)	259
AcuI	CTGAAG	1 cut(s)	188
AcyI	GRCGYC	1 cut(s)	393
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	3 cut(s)	72, 177, 573
AgsI	TTSAA	1 cut(s)	475
AjnI	CCWGG	1 cut(s)	572
AluBI	AGCT	4 cut(s)	17, 25, 410, 560
AluI	AGCT	4 cut(s)	17, 25, 410, 560
AlwI	GGATC	3 cut(s)	507, 508, 520
AlwNI	CAGNNNCTG	1 cut(s)	579
Ama87I	CYCGRG	1 cut(s)	171
AoxI	GGCC	1 cut(s)	564
ApeKI	GCWGC	6 cut(s)	14, 68, 401, 404, 407, 560
ApoI	RAATTY	1 cut(s)	259
AspLEI	GCGC	6 cut(s)	152, 275, 395, 440, 492, 579
AspS9I	GGNCC	1 cut(s)	565
AsuC2I	CCSGG	2 cut(s)	172, 173
AsuHPI	GGTGA	4 cut(s)	47, 94, 148, 157
AvaI	CYCGRG	1 cut(s)	171
BamHI	GGATCC	1 cut(s)	512
BanI	GGYRCC	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	298
BbvI	GCAGC	6 cut(s)	26, 55, 413, 416, 419, 547
BccI	CCATC	2 cut(s)	272, 467
BceAI	ACGGC	2 cut(s)	381, 402
BciT130I	CCWGG	1 cut(s)	574
BcnI	CCSGG	2 cut(s)	172, 173
BfaI	CTAG	2 cut(s)	134, 293
BfoI	RGCGCY	3 cut(s)	396, 441, 580
BisI	GCNGC	7 cut(s)	15, 69, 402, 405, 408, 561, 564
BlsI	GCNGC	7 cut(s)	16, 70, 403, 406, 409, 562, 565
Bme1390I	CCNGG	3 cut(s)	172, 173, 574
BmeT110I	CYCGRG	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	565
BmiI	GGNNCC	3 cut(s)	166, 394, 514
BmrFI	CCNGG	3 cut(s)	172, 173, 574
BmsI	GCATC	1 cut(s)	501
BpiI	GAAGAC	1 cut(s)	298
BplI	GAGNNNNNCTC	4 cut(s)	29, 61, 479, 511
BpmI	CTGGAG	1 cut(s)	556
BpuMI	CCSGG	2 cut(s)	172, 173
BsaAI	YACGTR	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	393
BsaJI	CCNNGG	4 cut(s)	88, 159, 171, 441
BsaXI	ACNNNNNCTCC	2 cut(s)	516, 546
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 177, 573
Bse3DI	GCAATG	2 cut(s)	331, 375
BseBI	CCWGG	1 cut(s)	574
BseDI	CCNNGG	4 cut(s)	88, 159, 171, 441
BseGI	GGATG	2 cut(s)	60, 537
BseLI	CCNNNNNNNGG	3 cut(s)	72, 177, 573
BseMI	GCAATG	2 cut(s)	331, 375
BseMII	CTCAG	2 cut(s)	207, 209
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	6 cut(s)	26, 55, 413, 416, 419, 547
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	566
BshNI	GGYRCC	1 cut(s)	392
BsiEI	CGRYCG	1 cut(s)	66
BsiHKCI	CYCGRG	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	172
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	3 cut(s)	72, 177, 573
BsmFI	GGGAC	1 cut(s)	151
BsnI	GGCC	1 cut(s)	566
BsoBI	CYCGRG	1 cut(s)	171
Bsp143I	GATC	4 cut(s)	226, 351, 500, 512
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	3 cut(s)	66, 399, 563
BspANI	GGCC	1 cut(s)	566
BspCNI	CTCAG	2 cut(s)	208, 208
BspLI	GGNNCC	3 cut(s)	166, 394, 514
BspPI	GGATC	3 cut(s)	507, 508, 520
BspQI	GCTCTTC	2 cut(s)	329, 384
BspT107I	GGYRCC	1 cut(s)	392
BsrDI	GCAATG	2 cut(s)	331, 375
BssECI	CCNNGG	4 cut(s)	88, 159, 171, 441
BssMI	GATC	4 cut(s)	226, 351, 500, 512
BssNI	GRCGYC	1 cut(s)	393
BssT1I	CCWWGG	2 cut(s)	159, 441
Bst2UI	CCWGG	1 cut(s)	574
Bst6I	CTCTTC	2 cut(s)	329, 384
BstACI	GRCGYC	1 cut(s)	393
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstBAI	YACGTR	1 cut(s)	119
BstC8I	GCNNGC	3 cut(s)	375, 391, 488
BstDEI	CTNAG	3 cut(s)	195, 216, 330
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	2 cut(s)	60, 537
BstH2I	RGCGCY	3 cut(s)	396, 441, 580
BstHHI	GCGC	6 cut(s)	152, 275, 395, 440, 492, 579
BstKTI	GATC	4 cut(s)	229, 354, 503, 515
BstMBI	GATC	4 cut(s)	226, 351, 500, 512
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 74, 374, 401, 407
BstNI	CCWGG	1 cut(s)	574
BstSCI	CCNGG	3 cut(s)	170, 171, 572
BstSNI	TACGTA	1 cut(s)	119
BstV1I	GCAGC	6 cut(s)	26, 55, 413, 416, 419, 547
BstV2I	GAAGAC	1 cut(s)	298
BstX2I	RGATCY	2 cut(s)	500, 512
BstYI	RGATCY	2 cut(s)	500, 512
BsuRI	GGCC	1 cut(s)	566
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	60, 537
Cac8I	GCNNGC	3 cut(s)	375, 391, 488
CaiI	CAGNNNCTG	1 cut(s)	579
CfoI	GCGC	6 cut(s)	152, 275, 395, 440, 492, 579
Cfr13I	GGNCC	1 cut(s)	565
Cfr9I	CCCGGG	1 cut(s)	171
CseI	GACGC	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	8 cut(s)	17, 25, 181, 215, 296, 410, 560, 566
CviKI_1	RGCY	8 cut(s)	17, 25, 181, 215, 296, 410, 560, 566
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	3 cut(s)	195, 216, 330
DinI	GGCGCC	1 cut(s)	394
DpnI	GATC	4 cut(s)	228, 353, 502, 514
DpnII	GATC	4 cut(s)	226, 351, 500, 512
Eam1104I	CTCTTC	2 cut(s)	329, 384
EarI	CTCTTC	2 cut(s)	329, 384
Eco105I	TACGTA	1 cut(s)	119
Eco130I	CCWWGG	2 cut(s)	159, 441
Eco57I	CTGAAG	1 cut(s)	188
Eco88I	CYCGRG	1 cut(s)	171
EcoRI	GAATTC	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	572
EcoT14I	CCWWGG	2 cut(s)	159, 441
EgeI	GGCGCC	1 cut(s)	394
EheI	GGCGCC	1 cut(s)	394
ErhI	CCWWGG	2 cut(s)	159, 441
FaeI	CATG	1 cut(s)	163
FaiI	YATR	4 cut(s)	122, 161, 277, 317
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	1 cut(s)	159
Fnu4HI	GCNGC	7 cut(s)	15, 69, 402, 405, 408, 561, 564
FokI	GGATG	2 cut(s)	67, 524
Fsp4HI	GCNGC	7 cut(s)	15, 69, 402, 405, 408, 561, 564
FspAI	RTGCGCAY	1 cut(s)	274
FspBI	CTAG	2 cut(s)	134, 293
FspI	TGCGCA	1 cut(s)	274
GlaI	GCGC	6 cut(s)	151, 274, 394, 439, 491, 578
GluI	GCNGC	7 cut(s)	15, 69, 402, 405, 408, 561, 564
GsuI	CTGGAG	1 cut(s)	556
HaeII	RGCGCY	3 cut(s)	396, 441, 580
HaeIII	GGCC	1 cut(s)	566
HapII	CCGG	1 cut(s)	172
HgaI	GACGC	1 cut(s)	84
HhaI	GCGC	6 cut(s)	152, 275, 395, 440, 492, 579
Hin1I	GRCGYC	1 cut(s)	393
Hin1II	CATG	1 cut(s)	163
Hin6I	GCGC	6 cut(s)	150, 273, 393, 438, 490, 577
HinP1I	GCGC	6 cut(s)	150, 273, 393, 438, 490, 577
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	1 cut(s)	172
HphI	GGTGA	4 cut(s)	47, 94, 148, 157
Hpy166II	GTNNAC	2 cut(s)	85, 418
Hpy188I	TCNGA	1 cut(s)	384
Hpy188III	TCNNGA	2 cut(s)	349, 498
Hpy8I	GTNNAC	2 cut(s)	85, 418
HpyAV	CCTTC	2 cut(s)	212, 490
HpyCH4IV	ACGT	3 cut(s)	118, 140, 242
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 74, 374, 401, 407
HpyF3I	CTNAG	3 cut(s)	195, 216, 330
HpySE526I	ACGT	3 cut(s)	118, 140, 242
Hsp92I	GRCGYC	1 cut(s)	393
Hsp92II	CATG	1 cut(s)	163
HspAI	GCGC	6 cut(s)	150, 273, 393, 438, 490, 577
KasI	GGCGCC	1 cut(s)	392
Kzo9I	GATC	4 cut(s)	226, 351, 500, 512
LguI	GCTCTTC	2 cut(s)	329, 384
LmnI	GCTCC	2 cut(s)	11, 92
LpnPI	CCDG	7 cut(s)	63, 185, 266, 325, 375, 483, 559
Lsp1109I	GCAGC	6 cut(s)	26, 55, 413, 416, 419, 547
LweI	GCATC	1 cut(s)	501
MaeI	CTAG	2 cut(s)	134, 293
MaeII	ACGT	3 cut(s)	118, 140, 242
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	4 cut(s)	228, 353, 502, 514
MboI	GATC	4 cut(s)	226, 351, 500, 512
MboII	GAAGA	7 cut(s)	181, 221, 298, 346, 346, 349, 371
MflI	RGATCY	2 cut(s)	500, 512
MluCI	AATT	3 cut(s)	259, 448, 470
Mly113I	GGCGCC	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	2 cut(s)	66, 502
MnlI	CCTC	6 cut(s)	83, 113, 171, 406, 551, 578
MseI	TTAA	2 cut(s)	506, 545
MslI	CAYNNNNRTG	1 cut(s)	368
MspA1I	CMGCKG	2 cut(s)	68, 560
MspI	CCGG	1 cut(s)	172
MspR9I	CCNGG	3 cut(s)	172, 173, 574
MvaI	CCWGG	1 cut(s)	574
MwoI	GCNNNNNNNGC	5 cut(s)	14, 74, 374, 401, 407
NarI	GGCGCC	1 cut(s)	393
NciI	CCSGG	2 cut(s)	172, 173
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	4 cut(s)	226, 351, 500, 512
NlaIII	CATG	1 cut(s)	163
NlaIV	GGNNCC	3 cut(s)	166, 394, 514
NmuCI	GTSAC	1 cut(s)	154
NsbI	TGCGCA	1 cut(s)	274
PciSI	GCTCTTC	2 cut(s)	329, 384
PkrI	GCNGC	7 cut(s)	16, 70, 403, 406, 409, 562, 565
PleI	GAGTC	1 cut(s)	46
PluTI	GGCGCC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	46
Ppu21I	YACGTR	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	572
PspGI	CCWGG	1 cut(s)	572
PspN4I	GGNNCC	3 cut(s)	166, 394, 514
PspPI	GGNCC	1 cut(s)	565
PstNI	CAGNNNCTG	1 cut(s)	579
PsuI	RGATCY	2 cut(s)	500, 512
PvuII	CAGCTG	1 cut(s)	560
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	368
SapI	GCTCTTC	2 cut(s)	329, 384
SaqAI	TTAA	2 cut(s)	506, 545
SatI	GCNGC	7 cut(s)	15, 69, 402, 405, 408, 561, 564
Sau3AI	GATC	4 cut(s)	226, 351, 500, 512
Sau96I	GGNCC	1 cut(s)	565
SchI	GAGTC	1 cut(s)	47
ScrFI	CCNGG	3 cut(s)	172, 173, 574
SetI	ASST	7 cut(s)	19, 27, 121, 143, 245, 412, 562
SfaNI	GCATC	1 cut(s)	501
SfoI	GGCGCC	1 cut(s)	394
SmaI	CCCGGG	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	368
SnaBI	TACGTA	1 cut(s)	119
Sse9I	AATT	3 cut(s)	259, 448, 470
SsiI	CCGC	3 cut(s)	66, 399, 563
SspDI	GGCGCC	1 cut(s)	392
SspMI	CTAG	2 cut(s)	134, 293
StyD4I	CCNGG	3 cut(s)	170, 171, 572
StyI	CCWWGG	2 cut(s)	159, 441
TaiI	ACGT	3 cut(s)	121, 143, 245
TaqI	TCGA	3 cut(s)	62, 105, 360
TasI	AATT	3 cut(s)	259, 448, 470
TauI	GCSGC	1 cut(s)	566
Tru1I	TTAA	2 cut(s)	506, 545
Tru9I	TTAA	2 cut(s)	506, 545
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	6 cut(s)	14, 68, 401, 404, 407, 560
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	3 cut(s)	17, 100, 526
TspGWI	ACGGA	1 cut(s)	292
TspMI	CCCGGG	1 cut(s)	171
XapI	RAATTY	1 cut(s)	259
XmaI	CCCGGG	1 cut(s)	171
XspI	CTAG	2 cut(s)	134, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.