Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002644

Physical Location & Seq

Genomic Coordinates Reverse (-)

64609587 .. 64610345

Gene Structure 759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG396600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGAAGGCAGCAACAGTAGCAGCAGGACCAGAACTACTCGAGGGTAGCGAAGCCCACAAAACAATCCCAAAAGTGAGGGTGAGCAGAGTGCTCTCTGTTATCGATTTCATTCTGCGAGTAGTTGCAGCCGTCGGAACACTAGCAAGTGCCATAGCCATGGGAACCAGCAGGCAAACACTTCCCTTTGTCACACGGTTTGTTCGATTCAAGGCTAATTACAAGGATCTTCCCACGTTCACGTTCTTTGTGATTGTCAATTCAATTGTATGTGTCTACCTTGTGCTTTCACTTCCGGTGTCTATTGTCCACATAATCTGGACTGGAGCAGTGAAAAGTAGGATCACCTTGGTCATCTTAGACACGGCAATGCTGGGTCTTTTAACTGCTGGTGCATCCTCAGCAACAGCAATAGTGGCCATGGCACACTATGGCAGCACCCTTGCCAATTGGTTTCCATTCTGCCGCCAATTCAACAACTTCTGTCAGCGCATTTCAGGCTCTCTGATCGGCTCGTTCGTCGCCATTGTTGTGATCATACTGCTAATCATCTTGTCCTCTGTCGCAATCTCTCGCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0048037 GO:0051536 GO:0051540

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

192

Amino Acids

20.67

Weight (kDa)

10.48

Isoelectric Point (pI)

29.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	29 - 177	5.4e-44	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15290
fragaria_vesca	FvH4_4g31110 FvH4_6g48140
malus_domestica	MD09G1053500.v1.1 MD13G1069600.v1.1 MD13G1069700.v1.1 MD16G1070000.v1.1
prunus_persica	Prupe.1G277100_v2.0.a1 Prupe.1G277100_v2.0.a1 Prupe.3G264800_v2.0.a1 Prupe.3G264900_v2.0.a1
pyrus_communis	pycom13g06250 pycom16g06100
rosa_chinensis	RchiOBHm_Chr2g0167481 RchiOBHm_Chr4g0439491
rosa_laevigata	RLG00000006266 RLG00000021723
rosa_multiflora	Rmu_sc0001206.1_g000035 Rmu_sc0007276.1_g000008 Rmu_sc0043018.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083450 Rroxscaffold_2G00083460 Rroxscaffold_5G00380400
rosa_rugosa	Rorug02G0530500 Rorug04G0318700 Rorug04G0318800
rosa_samantha	Rh2AG597700 Rh2AG597800 Rh2BG609200 Rh2BG609300 Rh2CG580100 Rh2CG580200 Rh2DG620500 Rh2DG620600 Rh4AG370000 Rh4BG382000 Rh4CG396600 Rh4DG376700
rosa_wichuraiana	Rw2G049740 Rw4G031550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	273
AciI	CCGC	2 cut(s)	463, 574
AclWI	GGATC	2 cut(s)	231, 347
AcoI	YGGCCR	1 cut(s)	414
AgsI	TTSAA	3 cut(s)	208, 261, 472
Alw21I	GWGCWC	1 cut(s)	93
AlwI	GGATC	2 cut(s)	231, 347
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	4 cut(s)	8, 20, 125, 432
AspLEI	GCGC	1 cut(s)	489
AspS9I	GGNCC	1 cut(s)	26
AsuHPI	GGTGA	2 cut(s)	91, 334
AvaI	CYCGRG	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	26
BalI	TGGCCA	1 cut(s)	416
Bbv12I	GWGCWC	1 cut(s)	93
BbvCI	CCTCAGC	1 cut(s)	397
BbvI	GCAGC	4 cut(s)	20, 32, 137, 444
BceAI	ACGGC	2 cut(s)	113, 378
BclI	TGATCA	1 cut(s)	531
BfaI	CTAG	2 cut(s)	140, 577
BisI	GCNGC	6 cut(s)	9, 21, 126, 433, 463, 574
BlsI	GCNGC	6 cut(s)	10, 22, 127, 434, 464, 575
Bme18I	GGWCC	1 cut(s)	26
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	163
BmsI	GCATC	1 cut(s)	401
BpmI	CTGGAG	1 cut(s)	342
Bpu10I	CCTNAGC	1 cut(s)	397
Bsa29I	ATCGAT	1 cut(s)	102
BsaJI	CCNNGG	3 cut(s)	156, 345, 417
BsaWI	WCCGGW	1 cut(s)	292
Bse1I	ACTGG	1 cut(s)	325
Bse3DI	GCAATG	1 cut(s)	372
BseCI	ATCGAT	1 cut(s)	102
BseDI	CCNNGG	3 cut(s)	156, 345, 417
BseGI	GGATG	1 cut(s)	392
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	1 cut(s)	325
BseXI	GCAGC	4 cut(s)	20, 32, 137, 444
BseYI	CCCAGC	1 cut(s)	370
BshFI	GGCC	1 cut(s)	416
BshVI	ATCGAT	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	93
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	293
BsnI	GGCC	1 cut(s)	416
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	4 cut(s)	223, 339, 504, 531
Bsp19I	CCATGG	2 cut(s)	156, 417
BspACI	CCGC	2 cut(s)	463, 574
BspANI	GGCC	1 cut(s)	416
BspCNI	CTCAG	1 cut(s)	410
BspDI	ATCGAT	1 cut(s)	102
BspLI	GGNNCC	1 cut(s)	163
BspPI	GGATC	2 cut(s)	231, 347
BsrDI	GCAATG	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	325
BssECI	CCNNGG	3 cut(s)	156, 345, 417
BssMI	GATC	4 cut(s)	223, 339, 504, 531
BssT1I	CCWWGG	3 cut(s)	156, 345, 417
Bst4CI	ACNGT	2 cut(s)	16, 195
BstC8I	GCNNGC	1 cut(s)	170
BstDEI	CTNAG	2 cut(s)	355, 397
BstDSI	CCRYGG	2 cut(s)	156, 417
BstF5I	GGATG	1 cut(s)	392
BstHHI	GCGC	1 cut(s)	489
BstKTI	GATC	4 cut(s)	226, 342, 507, 534
BstMBI	GATC	4 cut(s)	223, 339, 504, 531
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 398, 413, 495
BstV1I	GCAGC	4 cut(s)	20, 32, 137, 444
BstX2I	RGATCY	1 cut(s)	223
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	223
Bsu15I	ATCGAT	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	416
BsuTUI	ATCGAT	1 cut(s)	102
BtgI	CCRYGG	2 cut(s)	156, 417
BtsCI	GGATG	1 cut(s)	392
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	1 cut(s)	170
CfoI	GCGC	1 cut(s)	489
Cfr13I	GGNCC	1 cut(s)	26
ClaI	ATCGAT	1 cut(s)	102
CviAII	CATG	2 cut(s)	157, 418
CviJI	RGCY	7 cut(s)	53, 128, 155, 212, 416, 498, 510
CviKI_1	RGCY	7 cut(s)	53, 128, 155, 212, 416, 498, 510
DdeI	CTNAG	2 cut(s)	355, 397
DpnI	GATC	4 cut(s)	225, 341, 506, 533
DpnII	GATC	4 cut(s)	223, 339, 504, 531
EaeI	YGGCCR	1 cut(s)	414
Eco130I	CCWWGG	3 cut(s)	156, 345, 417
Eco47I	GGWCC	1 cut(s)	26
Eco88I	CYCGRG	1 cut(s)	38
EcoT14I	CCWWGG	3 cut(s)	156, 345, 417
ErhI	CCWWGG	3 cut(s)	156, 345, 417
FaeI	CATG	2 cut(s)	160, 421
FaiI	YATR	7 cut(s)	152, 158, 268, 311, 419, 429, 536
FatI	CATG	2 cut(s)	156, 417
FbaI	TGATCA	1 cut(s)	531
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	6 cut(s)	9, 21, 126, 433, 463, 574
FokI	GGATG	1 cut(s)	379
Fsp4HI	GCNGC	6 cut(s)	9, 21, 126, 433, 463, 574
FspBI	CTAG	2 cut(s)	140, 577
GlaI	GCGC	1 cut(s)	488
GluI	GCNGC	6 cut(s)	9, 21, 126, 433, 463, 574
GsaI	CCCAGC	1 cut(s)	374
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	1 cut(s)	416
HapII	CCGG	1 cut(s)	293
HhaI	GCGC	1 cut(s)	489
Hin1II	CATG	2 cut(s)	160, 421
Hin6I	GCGC	1 cut(s)	487
HinP1I	GCGC	1 cut(s)	487
HinfI	GANTC	1 cut(s)	204
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	2 cut(s)	91, 334
Hpy166II	GTNNAC	3 cut(s)	237, 274, 307
Hpy188I	TCNGA	2 cut(s)	134, 504
Hpy188III	TCNNGA	1 cut(s)	316
Hpy8I	GTNNAC	3 cut(s)	237, 274, 307
Hpy99I	CGWCG	2 cut(s)	134, 521
HpyCH4III	ACNGT	2 cut(s)	16, 195
HpyCH4IV	ACGT	2 cut(s)	233, 239
HpyCH4V	TGCA	2 cut(s)	125, 392
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 398, 413, 495
HpyF3I	CTNAG	2 cut(s)	355, 397
HpySE526I	ACGT	2 cut(s)	233, 239
Hsp92II	CATG	2 cut(s)	160, 421
HspAI	GCGC	1 cut(s)	487
Ksp22I	TGATCA	1 cut(s)	531
Kzo9I	GATC	4 cut(s)	223, 339, 504, 531
LmnI	GCTCC	1 cut(s)	323
Lsp1109I	GCAGC	4 cut(s)	20, 32, 137, 444
LweI	GCATC	1 cut(s)	401
MaeI	CTAG	2 cut(s)	140, 577
MaeII	ACGT	2 cut(s)	233, 239
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	4 cut(s)	225, 341, 506, 533
MboI	GATC	4 cut(s)	223, 339, 504, 531
MboII	GAAGA	1 cut(s)	218
MfeI	CAATTG	2 cut(s)	261, 445
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	93
MlsI	TGGCCA	1 cut(s)	416
MluCI	AATT	5 cut(s)	214, 256, 261, 445, 467
MluNI	TGGCCA	1 cut(s)	416
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	4 cut(s)	34, 69, 406, 565
Mox20I	TGGCCA	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	416
MseI	TTAA	1 cut(s)	380
MslI	CAYNNNNRTG	3 cut(s)	155, 365, 527
Msp20I	TGGCCA	1 cut(s)	416
MspI	CCGG	1 cut(s)	293
MunI	CAATTG	2 cut(s)	261, 445
MwoI	GCNNNNNNNGC	4 cut(s)	17, 398, 413, 495
NcoI	CCATGG	2 cut(s)	156, 417
NdeII	GATC	4 cut(s)	223, 339, 504, 531
NlaIII	CATG	2 cut(s)	160, 421
NlaIV	GGNNCC	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	187
PaeR7I	CTCGAG	1 cut(s)	38
PcsI	WCGNNNNNNNCGW	3 cut(s)	45, 199, 513
PfeI	GAWTC	1 cut(s)	204
PkrI	GCNGC	6 cut(s)	10, 22, 127, 434, 464, 575
PspFI	CCCAGC	1 cut(s)	370
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	26
PspXI	VCTCGAGB	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	223
RseI	CAYNNNNRTG	3 cut(s)	155, 365, 527
SaqAI	TTAA	1 cut(s)	380
SatI	GCNGC	6 cut(s)	9, 21, 126, 433, 463, 574
Sau3AI	GATC	4 cut(s)	223, 339, 504, 531
Sau96I	GGNCC	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	4 cut(s)	236, 242, 279, 347
SfaNI	GCATC	1 cut(s)	401
Sfr274I	CTCGAG	1 cut(s)	38
SinI	GGWCC	1 cut(s)	26
SlaI	CTCGAG	1 cut(s)	38
SmiMI	CAYNNNNRTG	3 cut(s)	155, 365, 527
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	5 cut(s)	214, 256, 261, 445, 467
SsiI	CCGC	2 cut(s)	463, 574
SspMI	CTAG	2 cut(s)	140, 577
StyI	CCWWGG	3 cut(s)	156, 345, 417
TaaI	ACNGT	2 cut(s)	16, 195
TaiI	ACGT	2 cut(s)	236, 242
TaqI	TCGA	3 cut(s)	39, 102, 202
TasI	AATT	5 cut(s)	214, 256, 261, 445, 467
TauI	GCSGC	2 cut(s)	465, 576
TfiI	GAWTC	1 cut(s)	204
Tru1I	TTAA	1 cut(s)	380
Tru9I	TTAA	1 cut(s)	380
TscAI	CASTG	1 cut(s)	333
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	4 cut(s)	8, 20, 125, 432
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	2 cut(s)	17, 97
TspRI	CASTG	1 cut(s)	333
VpaK11BI	GGWCC	1 cut(s)	26
XhoI	CTCGAG	1 cut(s)	38
XmiI	GTMKAC	1 cut(s)	273
XspI	CTAG	2 cut(s)	140, 577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.