Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion (By similarity)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G15290 |
| fragaria_vesca | FvH4_4g31110 FvH4_6g48140 |
| malus_domestica | MD09G1053500.v1.1 MD13G1069600.v1.1 MD13G1069700.v1.1 MD16G1070000.v1.1 |
| prunus_persica | Prupe.1G277100_v2.0.a1 Prupe.1G277100_v2.0.a1 Prupe.3G264800_v2.0.a1 Prupe.3G264900_v2.0.a1 |
| pyrus_communis | pycom13g06250 pycom16g06100 |
| rosa_chinensis | RchiOBHm_Chr2g0167481 RchiOBHm_Chr4g0439491 |
| rosa_laevigata | RLG00000006266 RLG00000021723 |
| rosa_multiflora | Rmu_sc0001206.1_g000035 Rmu_sc0007276.1_g000008 Rmu_sc0043018.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00083450 Rroxscaffold_2G00083460 Rroxscaffold_5G00380400 |
| rosa_rugosa | Rorug02G0530500 Rorug04G0318700 Rorug04G0318800 |
| rosa_samantha | Rh2AG597700 Rh2AG597800 Rh2BG609200 Rh2BG609300 Rh2CG580100 Rh2CG580200 Rh2DG620500 Rh2DG620600 Rh4AG370000 Rh4BG382000 Rh4CG396600 Rh4DG376700 |
| rosa_wichuraiana | Rw2G049740 Rw4G031550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 365 |
| Acc36I | ACCTGC | 1 cut(s) | 365 |
| Acc65I | GGTACC | 1 cut(s) | 122 |
| AccB1I | GGYRCC | 2 cut(s) | 122, 377 |
| AciI | CCGC | 3 cut(s) | 63, 387, 549 |
| AclWI | GGATC | 1 cut(s) | 505 |
| AcoI | YGGCCR | 1 cut(s) | 384 |
| AcuI | CTGAAG | 1 cut(s) | 173 |
| AfaI | GTAC | 2 cut(s) | 124, 404 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 62, 558 |
| AgsI | TTSAA | 2 cut(s) | 51, 460 |
| AjnI | CCWGG | 1 cut(s) | 155 |
| AluBI | AGCT | 7 cut(s) | 11, 20, 28, 143, 281, 395, 545 |
| AluI | AGCT | 7 cut(s) | 11, 20, 28, 143, 281, 395, 545 |
| AlwI | GGATC | 1 cut(s) | 505 |
| AoxI | GGCC | 1 cut(s) | 384 |
| ApeKI | GCWGC | 5 cut(s) | 11, 14, 17, 80, 545 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 165 |
| Asp718I | GGTACC | 1 cut(s) | 122 |
| AsuHPI | GGTGA | 2 cut(s) | 44, 79 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 114, 147 |
| BanI | GGYRCC | 2 cut(s) | 122, 377 |
| BbvI | GCAGC | 4 cut(s) | 26, 29, 92, 532 |
| BccI | CCATC | 2 cut(s) | 92, 257 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 363, 397 |
| BciT130I | CCWGG | 1 cut(s) | 157 |
| BfaI | CTAG | 1 cut(s) | 278 |
| BfmI | CTRYAG | 2 cut(s) | 12, 138 |
| BfuAI | ACCTGC | 1 cut(s) | 365 |
| BisI | GCNGC | 7 cut(s) | 12, 15, 18, 81, 387, 546, 549 |
| BlsI | GCNGC | 7 cut(s) | 13, 16, 19, 82, 388, 547, 550 |
| Bme1390I | CCNGG | 1 cut(s) | 157 |
| BmiI | GGNNCC | 3 cut(s) | 124, 379, 440 |
| BmrFI | CCNGG | 1 cut(s) | 157 |
| BsaJI | CCNNGG | 3 cut(s) | 156, 381, 426 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 62, 558 |
| Bse1I | ACTGG | 1 cut(s) | 440 |
| BseBI | CCWGG | 1 cut(s) | 157 |
| BseDI | CCNNGG | 3 cut(s) | 156, 381, 426 |
| BseGI | GGATG | 1 cut(s) | 84 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 62, 558 |
| BseMII | CTCAG | 1 cut(s) | 192 |
| BseNI | ACTGG | 1 cut(s) | 440 |
| BseX3I | CGGCCG | 1 cut(s) | 384 |
| BseXI | GCAGC | 4 cut(s) | 26, 29, 92, 532 |
| Bsh1285I | CGRYCG | 1 cut(s) | 387 |
| BshFI | GGCC | 1 cut(s) | 386 |
| BshNI | GGYRCC | 2 cut(s) | 122, 377 |
| BsiEI | CGRYCG | 1 cut(s) | 387 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 62, 558 |
| BsmI | GAATGC | 2 cut(s) | 360, 427 |
| BsnI | GGCC | 1 cut(s) | 386 |
| Bsp143I | GATC | 4 cut(s) | 211, 336, 497, 531 |
| BspACI | CCGC | 3 cut(s) | 63, 387, 549 |
| BspANI | GGCC | 1 cut(s) | 386 |
| BspCNI | CTCAG | 1 cut(s) | 193 |
| BspLI | GGNNCC | 3 cut(s) | 124, 379, 440 |
| BspMAI | CTGCAG | 1 cut(s) | 16 |
| BspMI | ACCTGC | 1 cut(s) | 365 |
| BspPI | GGATC | 1 cut(s) | 505 |
| BspQI | GCTCTTC | 1 cut(s) | 369 |
| BspT107I | GGYRCC | 2 cut(s) | 122, 377 |
| BsrI | ACTGG | 1 cut(s) | 440 |
| BssECI | CCNNGG | 3 cut(s) | 156, 381, 426 |
| BssMI | GATC | 4 cut(s) | 211, 336, 497, 531 |
| BssT1I | CCWWGG | 1 cut(s) | 426 |
| Bst2UI | CCWGG | 1 cut(s) | 157 |
| Bst4CI | ACNGT | 2 cut(s) | 183, 323 |
| Bst6I | CTCTTC | 1 cut(s) | 369 |
| BstC8I | GCNNGC | 1 cut(s) | 360 |
| BstDEI | CTNAG | 4 cut(s) | 101, 127, 201, 406 |
| BstF5I | GGATG | 1 cut(s) | 84 |
| BstKTI | GATC | 4 cut(s) | 214, 339, 500, 534 |
| BstMBI | GATC | 4 cut(s) | 211, 336, 497, 531 |
| BstMCI | CGRYCG | 1 cut(s) | 387 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 17, 386, 392 |
| BstNI | CCWGG | 1 cut(s) | 157 |
| BstSCI | CCNGG | 1 cut(s) | 155 |
| BstSFI | CTRYAG | 2 cut(s) | 12, 138 |
| BstV1I | GCAGC | 4 cut(s) | 26, 29, 92, 532 |
| BstX2I | RGATCY | 1 cut(s) | 497 |
| BstYI | RGATCY | 1 cut(s) | 497 |
| BstZI | CGGCCG | 1 cut(s) | 384 |
| BsuRI | GGCC | 1 cut(s) | 386 |
| BtsCI | GGATG | 1 cut(s) | 84 |
| BveI | ACCTGC | 1 cut(s) | 365 |
| Cac8I | GCNNGC | 1 cut(s) | 360 |
| Csp6I | GTAC | 2 cut(s) | 123, 403 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 379, 414 |
| CviQI | GTAC | 2 cut(s) | 123, 403 |
| DdeI | CTNAG | 4 cut(s) | 101, 127, 201, 406 |
| DpnI | GATC | 4 cut(s) | 213, 338, 499, 533 |
| DpnII | GATC | 4 cut(s) | 211, 336, 497, 531 |
| EaeI | YGGCCR | 1 cut(s) | 384 |
| EagI | CGGCCG | 1 cut(s) | 384 |
| Eam1104I | CTCTTC | 1 cut(s) | 369 |
| EarI | CTCTTC | 1 cut(s) | 369 |
| EclXI | CGGCCG | 1 cut(s) | 384 |
| Eco130I | CCWWGG | 1 cut(s) | 426 |
| Eco52I | CGGCCG | 1 cut(s) | 384 |
| Eco57I | CTGAAG | 1 cut(s) | 173 |
| EcoRII | CCWGG | 1 cut(s) | 155 |
| EcoT14I | CCWWGG | 1 cut(s) | 426 |
| ErhI | CCWWGG | 1 cut(s) | 426 |
| FaiI | YATR | 5 cut(s) | 140, 146, 207, 256, 302 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 154, 186 |
| FauI | CCCGC | 1 cut(s) | 56 |
| Fnu4HI | GCNGC | 7 cut(s) | 12, 15, 18, 81, 387, 546, 549 |
| FokI | GGATG | 1 cut(s) | 71 |
| Fsp4HI | GCNGC | 7 cut(s) | 12, 15, 18, 81, 387, 546, 549 |
| FspBI | CTAG | 1 cut(s) | 278 |
| GluI | GCNGC | 7 cut(s) | 12, 15, 18, 81, 387, 546, 549 |
| HaeIII | GGCC | 1 cut(s) | 386 |
| HincII | GTYRAC | 1 cut(s) | 452 |
| HindII | GTYRAC | 1 cut(s) | 452 |
| HinfI | GANTC | 2 cut(s) | 35, 477 |
| HphI | GGTGA | 2 cut(s) | 44, 79 |
| Hpy166II | GTNNAC | 3 cut(s) | 70, 403, 452 |
| Hpy188I | TCNGA | 2 cut(s) | 267, 369 |
| Hpy188III | TCNNGA | 2 cut(s) | 334, 529 |
| Hpy8I | GTNNAC | 3 cut(s) | 70, 403, 452 |
| HpyAV | CCTTC | 2 cut(s) | 197, 475 |
| HpyCH4III | ACNGT | 2 cut(s) | 183, 323 |
| HpyCH4IV | ACGT | 1 cut(s) | 227 |
| HpyCH4V | TGCA | 2 cut(s) | 14, 314 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 17, 386, 392 |
| HpyF3I | CTNAG | 4 cut(s) | 101, 127, 201, 406 |
| HpySE526I | ACGT | 1 cut(s) | 227 |
| KpnI | GGTACC | 1 cut(s) | 126 |
| Kzo9I | GATC | 4 cut(s) | 211, 336, 497, 531 |
| LguI | GCTCTTC | 1 cut(s) | 369 |
| LmnI | GCTCC | 1 cut(s) | 8 |
| LpnPI | CCDG | 6 cut(s) | 142, 169, 344, 360, 421, 468 |
| Lsp1109I | GCAGC | 4 cut(s) | 26, 29, 92, 532 |
| MaeI | CTAG | 1 cut(s) | 278 |
| MaeII | ACGT | 1 cut(s) | 227 |
| MalI | GATC | 4 cut(s) | 213, 338, 499, 533 |
| MboI | GATC | 4 cut(s) | 211, 336, 497, 531 |
| MboII | GAAGA | 5 cut(s) | 206, 283, 331, 334, 356 |
| MfeI | CAATTG | 1 cut(s) | 510 |
| MflI | RGATCY | 1 cut(s) | 497 |
| MluCI | AATT | 4 cut(s) | 244, 455, 460, 510 |
| MlyI | GAGTC | 1 cut(s) | 44 |
| MmeI | TCCRAC | 1 cut(s) | 242 |
| MnlI | CCTC | 3 cut(s) | 68, 98, 391 |
| MroXI | GAANNNNTTC | 1 cut(s) | 165 |
| MseI | TTAA | 1 cut(s) | 536 |
| MslI | CAYNNNNRTG | 1 cut(s) | 353 |
| MspA1I | CMGCKG | 1 cut(s) | 545 |
| MspR9I | CCNGG | 1 cut(s) | 157 |
| MunI | CAATTG | 1 cut(s) | 510 |
| Mva1269I | GAATGC | 2 cut(s) | 360, 427 |
| MvaI | CCWGG | 1 cut(s) | 157 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 17, 386, 392 |
| NdeII | GATC | 4 cut(s) | 211, 336, 497, 531 |
| NlaIV | GGNNCC | 3 cut(s) | 124, 379, 440 |
| NmeAIII | GCCGAG | 2 cut(s) | 362, 538 |
| PaqCI | CACCTGC | 1 cut(s) | 365 |
| PciSI | GCTCTTC | 1 cut(s) | 369 |
| PctI | GAATGC | 2 cut(s) | 360, 427 |
| PdmI | GAANNNNTTC | 1 cut(s) | 165 |
| PfeI | GAWTC | 1 cut(s) | 477 |
| PkrI | GCNGC | 7 cut(s) | 13, 16, 19, 82, 388, 547, 550 |
| PleI | GAGTC | 1 cut(s) | 43 |
| PpsI | GAGTC | 1 cut(s) | 43 |
| Psp6I | CCWGG | 1 cut(s) | 155 |
| PspGI | CCWGG | 1 cut(s) | 155 |
| PspN4I | GGNNCC | 3 cut(s) | 124, 379, 440 |
| PstI | CTGCAG | 1 cut(s) | 16 |
| PsuI | RGATCY | 1 cut(s) | 497 |
| PvuII | CAGCTG | 1 cut(s) | 545 |
| RsaI | GTAC | 2 cut(s) | 124, 404 |
| RsaNI | GTAC | 2 cut(s) | 123, 403 |
| RseI | CAYNNNNRTG | 1 cut(s) | 353 |
| SapI | GCTCTTC | 1 cut(s) | 369 |
| SaqAI | TTAA | 1 cut(s) | 536 |
| SatI | GCNGC | 7 cut(s) | 12, 15, 18, 81, 387, 546, 549 |
| Sau3AI | GATC | 4 cut(s) | 211, 336, 497, 531 |
| SchI | GAGTC | 1 cut(s) | 44 |
| ScrFI | CCNGG | 1 cut(s) | 157 |
| SfcI | CTRYAG | 2 cut(s) | 12, 138 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 353 |
| Sse9I | AATT | 4 cut(s) | 244, 455, 460, 510 |
| SsiI | CCGC | 3 cut(s) | 63, 387, 549 |
| SspMI | CTAG | 1 cut(s) | 278 |
| StyD4I | CCNGG | 1 cut(s) | 155 |
| StyI | CCWWGG | 1 cut(s) | 426 |
| TaaI | ACNGT | 2 cut(s) | 183, 323 |
| TaiI | ACGT | 1 cut(s) | 230 |
| TaqI | TCGA | 2 cut(s) | 90, 345 |
| TasI | AATT | 4 cut(s) | 244, 455, 460, 510 |
| TatI | WGTACW | 1 cut(s) | 402 |
| TauI | GCSGC | 2 cut(s) | 389, 551 |
| TfiI | GAWTC | 1 cut(s) | 477 |
| Tru1I | TTAA | 1 cut(s) | 536 |
| Tru9I | TTAA | 1 cut(s) | 536 |
| TseI | GCWGC | 5 cut(s) | 11, 14, 17, 80, 545 |
| TspDTI | ATGAA | 2 cut(s) | 17, 85 |
| XmnI | GAANNNNTTC | 1 cut(s) | 165 |
| XspI | CTAG | 1 cut(s) | 278 |