Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002644

Physical Location & Seq

Genomic Coordinates Reverse (-)

85082204 .. 85082437

Gene Structure 234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG620600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGAAAGCTCTATGACGGTGGTGGAAGGTGGACCGAAATCAATTGTTATTATTATGTGGAAGGGATCAGGGAACGAGAATGAGGTCTTCGATGAGGACGAAGAGAAAAGTTTCCTGCATGGCATAGAGGACGTTGTGGATTTGAAGTGTTTACAGTGGAATTGTGGAAGCAAGGAGCCAGTGTTTGTCCGAGAAAGGCTGAAGGAAGTAATGACTGATGCCAAAGTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

77

Amino Acids

8.72

Weight (kDa)

4.56

Isoelectric Point (pI)

34.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15290
fragaria_vesca	FvH4_4g31110 FvH4_6g48140
malus_domestica	MD09G1053500.v1.1 MD13G1069600.v1.1 MD13G1069700.v1.1 MD16G1070000.v1.1
prunus_persica	Prupe.1G277100_v2.0.a1 Prupe.1G277100_v2.0.a1 Prupe.3G264800_v2.0.a1 Prupe.3G264900_v2.0.a1
pyrus_communis	pycom13g06250 pycom16g06100
rosa_chinensis	RchiOBHm_Chr2g0167481 RchiOBHm_Chr4g0439491
rosa_laevigata	RLG00000006266 RLG00000021723
rosa_multiflora	Rmu_sc0001206.1_g000035 Rmu_sc0007276.1_g000008 Rmu_sc0043018.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083450 Rroxscaffold_2G00083460 Rroxscaffold_5G00380400
rosa_rugosa	Rorug02G0530500 Rorug04G0318700 Rorug04G0318800
rosa_samantha	Rh2AG597700 Rh2AG597800 Rh2BG609200 Rh2BG609300 Rh2CG580100 Rh2CG580200 Rh2DG620500 Rh2DG620600 Rh4AG370000 Rh4BG382000 Rh4CG396600 Rh4DG376700
rosa_wichuraiana	Rw2G049740 Rw4G031550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	73
AcuI	CTGAAG	1 cut(s)	221
AgsI	TTSAA	1 cut(s)	145
AluBI	AGCT	1 cut(s)	9
AluI	AGCT	1 cut(s)	9
AlwI	GGATC	1 cut(s)	73
Asp700I	GAANNNNTTC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	79
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	177
BmsI	GCATC	1 cut(s)	208
BpiI	GAAGAC	1 cut(s)	79
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bse1I	ACTGG	1 cut(s)	179
BseNI	ACTGG	1 cut(s)	179
Bsp143I	GATC	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	177
BspPI	GGATC	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	179
BssMI	GATC	1 cut(s)	65
Bst4CI	ACNGT	2 cut(s)	19, 156
Bst6I	CTCTTC	1 cut(s)	96
BstKTI	GATC	1 cut(s)	68
BstMBI	GATC	1 cut(s)	65
BstV2I	GAAGAC	1 cut(s)	79
BtsIMutI	CAGTG	2 cut(s)	161, 186
Cfr13I	GGNCC	1 cut(s)	32
CviAII	CATG	1 cut(s)	119
CviJI	RGCY	3 cut(s)	9, 178, 199
CviKI_1	RGCY	3 cut(s)	9, 178, 199
DpnI	GATC	1 cut(s)	67
DpnII	GATC	1 cut(s)	65
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	221
FaeI	CATG	1 cut(s)	122
FaiI	YATR	4 cut(s)	14, 56, 120, 125
FatI	CATG	1 cut(s)	118
Hin1II	CATG	1 cut(s)	122
Hpy166II	GTNNAC	2 cut(s)	32, 152
Hpy188I	TCNGA	1 cut(s)	191
Hpy8I	GTNNAC	2 cut(s)	32, 152
HpyAV	CCTTC	3 cut(s)	20, 55, 196
HpyCH4III	ACNGT	2 cut(s)	19, 156
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	1 cut(s)	118
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	1 cut(s)	122
Kzo9I	GATC	1 cut(s)	65
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	3 cut(s)	54, 128, 192
LweI	GCATC	1 cut(s)	208
MaeII	ACGT	1 cut(s)	132
MalI	GATC	1 cut(s)	67
MboI	GATC	1 cut(s)	65
MboII	GAAGA	2 cut(s)	79, 113
MfeI	CAATTG	1 cut(s)	42
MluCI	AATT	2 cut(s)	42, 160
MnlI	CCTC	3 cut(s)	76, 88, 121
MroXI	GAANNNNTTC	1 cut(s)	110
MunI	CAATTG	1 cut(s)	42
NdeII	GATC	1 cut(s)	65
NlaIII	CATG	1 cut(s)	122
NlaIV	GGNNCC	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PdmI	GAANNNNTTC	1 cut(s)	110
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	1 cut(s)	32
Sau3AI	GATC	1 cut(s)	65
Sau96I	GGNCC	1 cut(s)	32
SetI	ASST	4 cut(s)	11, 31, 87, 135
SfaNI	GCATC	1 cut(s)	208
SgeI	CNNG	7 cut(s)	81, 88, 127, 131, 184, 191, 203
SinI	GGWCC	1 cut(s)	32
Sse9I	AATT	2 cut(s)	42, 160
TaaI	ACNGT	2 cut(s)	19, 156
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	1 cut(s)	90
TaqII	GACCGA	1 cut(s)	49
TasI	AATT	2 cut(s)	42, 160
TscAI	CASTG	2 cut(s)	161, 186
TspRI	CASTG	2 cut(s)	161, 186
VpaK11BI	GGWCC	1 cut(s)	32
XmnI	GAANNNNTTC	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.