Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002644

Physical Location & Seq

Genomic Coordinates Reverse (-)

66064143 .. 66064679

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0530500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGATCAGAGGGAGGATTACCTCGTCAAGGAGGCGTTCGTGTATTAGGTCCGGTGGCCATGGAGCCAGCATGGATGATATTGATAGGGGATGGACTCTACTTCACGTTGGTTGCCGCAAGGGCGATCTCAAAGAGGTGAAGCGGCTTCTCGACCAGGGTGTACTGGATGTGAATATGGCTACATGCGGTGGTCAAAAATCAAGAGGGGTCACCCCTCTTCACCTCGCCGCAGAGGGCGGCCATGTTGACGTCATGGATGAGTTGCTTCAGCGTGGGGCTAACATAGATGCCAGAACTAAGCAGCTGGGCGGTGCTTGCGGCTGGACTCCGCTTCACAATGCGGCGAAAGAGAGGAGGAGGGAGGCAATGAAGTTTCTGGTGGAGAATGGGGCGTTCTTGCCGGTTGACATGCATGATTGTAGGTTCAACCCTCCACTCCATTACTGCCTCGGTCTCGAGTGGGCTTACGAGGACATGAAACGGCTTCAGCAACAAACCTCATCTTCAGGGGAGAGCTCTTGCGGATCCGAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007043 GO:0008150 GO:0009505 GO:0009531 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030312 GO:0034329 GO:0034330 GO:0042545 GO:0042802 GO:0042803 GO:0044085 GO:0044426 GO:0044462 GO:0044464 GO:0045216 GO:0045229 GO:0046983 GO:0048037 GO:0048226 GO:0051536 GO:0051540 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

178

Amino Acids

19.65

Weight (kDa)

8.52

Isoelectric Point (pI)

59.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	25 - 98	6.3e-12	Ankyrin repeats (3 copies)
Ank	PF00023	69 - 100	1e-09	Ankyrin repeat
Ank_3	PF13606	69 - 97	3.6e-06	Ankyrin repeat
Ank_4	PF13637	73 - 127	1.7e-09	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15290
fragaria_vesca	FvH4_4g31110 FvH4_6g48140
malus_domestica	MD09G1053500.v1.1 MD13G1069600.v1.1 MD13G1069700.v1.1 MD16G1070000.v1.1
prunus_persica	Prupe.1G277100_v2.0.a1 Prupe.1G277100_v2.0.a1 Prupe.3G264800_v2.0.a1 Prupe.3G264900_v2.0.a1
pyrus_communis	pycom13g06250 pycom16g06100
rosa_chinensis	RchiOBHm_Chr2g0167481 RchiOBHm_Chr4g0439491
rosa_laevigata	RLG00000006266 RLG00000021723
rosa_multiflora	Rmu_sc0001206.1_g000035 Rmu_sc0007276.1_g000008 Rmu_sc0043018.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083450 Rroxscaffold_2G00083460 Rroxscaffold_5G00380400
rosa_rugosa	Rorug02G0530500 Rorug04G0318700 Rorug04G0318800
rosa_samantha	Rh2AG597700 Rh2AG597800 Rh2BG609200 Rh2BG609300 Rh2CG580100 Rh2CG580200 Rh2DG620500 Rh2DG620600 Rh4AG370000 Rh4BG382000 Rh4CG396600 Rh4DG376700
rosa_wichuraiana	Rw2G049740 Rw4G031550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	252
AclWI	GGATC	2 cut(s)	519, 532
AcoI	YGGCCR	2 cut(s)	55, 238
AcuI	CTGAAG	3 cut(s)	251, 470, 489
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	1 cut(s)	162
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	1 cut(s)	427
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	2 cut(s)	304, 516
AluI	AGCT	2 cut(s)	304, 516
Alw21I	GWGCWC	1 cut(s)	518
Alw26I	GTCTC	1 cut(s)	458
AlwI	GGATC	2 cut(s)	519, 532
Ama87I	CYCGRG	1 cut(s)	455
AoxI	GGCC	2 cut(s)	55, 238
ApeKI	GCWGC	1 cut(s)	301
AspS9I	GGNCC	1 cut(s)	48
AsuHPI	GGTGA	3 cut(s)	148, 202, 212
AvaI	CYCGRG	1 cut(s)	455
AvaII	GGWCC	1 cut(s)	48
BalI	TGGCCA	1 cut(s)	57
BamHI	GGATCC	1 cut(s)	524
BanII	GRGCYC	1 cut(s)	518
Bbv12I	GWGCWC	1 cut(s)	518
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	1 cut(s)	84
BceAI	ACGGC	1 cut(s)	497
BciT130I	CCWGG	1 cut(s)	155
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	458
BglI	GCCNNNNNGGC	1 cut(s)	120
BisI	GCNGC	7 cut(s)	115, 143, 228, 238, 302, 319, 342
BlsI	GCNGC	7 cut(s)	116, 144, 229, 239, 303, 320, 343
Bme1390I	CCNGG	1 cut(s)	155
Bme18I	GGWCC	1 cut(s)	48
BmeT110I	CYCGRG	1 cut(s)	455
BmgT120I	GGNCC	1 cut(s)	48
BmiI	GGNNCC	2 cut(s)	64, 526
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	1 cut(s)	277
BsaHI	GRCGYC	1 cut(s)	249
BsaI	GGTCTC	1 cut(s)	458
BsaJI	CCNNGG	3 cut(s)	58, 154, 448
BsaWI	WCCGGW	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse118I	RCCGGY	1 cut(s)	400
Bse1I	ACTGG	1 cut(s)	168
Bse3DI	GCAATG	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	3 cut(s)	58, 154, 448
BseGI	GGATG	4 cut(s)	79, 95, 172, 262
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMI	GCAATG	1 cut(s)	372
BseNI	ACTGG	1 cut(s)	168
BseRI	GAGGAG	2 cut(s)	367, 370
BseXI	GCAGC	1 cut(s)	313
BseYI	CCCAGC	1 cut(s)	304
BshFI	GGCC	2 cut(s)	57, 240
BsiHKAI	GWGCWC	1 cut(s)	518
BsiHKCI	CYCGRG	1 cut(s)	455
BsiSI	CCGG	2 cut(s)	51, 401
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	458
BsnI	GGCC	2 cut(s)	57, 240
Bso31I	GGTCTC	1 cut(s)	458
BsoBI	CYCGRG	1 cut(s)	455
Bsp1286I	GDGCHC	1 cut(s)	518
Bsp143I	GATC	3 cut(s)	3, 124, 524
Bsp19I	CCATGG	1 cut(s)	58
BspANI	GGCC	2 cut(s)	57, 240
BspLI	GGNNCC	2 cut(s)	64, 526
BspPI	GGATC	2 cut(s)	519, 532
BspTNI	GGTCTC	1 cut(s)	458
BsrDI	GCAATG	1 cut(s)	372
BsrFI	RCCGGY	1 cut(s)	400
BsrI	ACTGG	1 cut(s)	168
BssAI	RCCGGY	1 cut(s)	400
BssECI	CCNNGG	3 cut(s)	58, 154, 448
BssMI	GATC	3 cut(s)	3, 124, 524
BssNI	GRCGYC	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	58
Bst2UI	CCWGG	1 cut(s)	155
Bst6I	CTCTTC	1 cut(s)	222
BstACI	GRCGYC	1 cut(s)	249
BstC8I	GCNNGC	2 cut(s)	67, 316
BstDEI	CTNAG	1 cut(s)	297
BstDSI	CCRYGG	1 cut(s)	58
BstEII	GGTNACC	1 cut(s)	208
BstENI	CCTNNNNNAGG	1 cut(s)	25
BstF5I	GGATG	4 cut(s)	79, 95, 172, 262
BstKTI	GATC	3 cut(s)	6, 127, 527
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	3 cut(s)	3, 124, 524
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 315
BstNI	CCWGG	1 cut(s)	155
BstNSI	RCATGY	2 cut(s)	186, 412
BstPI	GGTNACC	1 cut(s)	208
BstSCI	CCNGG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	313
BstX2I	RGATCY	1 cut(s)	524
BstYI	RGATCY	1 cut(s)	524
BsuRI	GGCC	2 cut(s)	57, 240
BtgI	CCRYGG	1 cut(s)	58
BtsCI	GGATG	4 cut(s)	79, 95, 172, 262
Cac8I	GCNNGC	2 cut(s)	67, 316
Cfr10I	RCCGGY	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	161
CviAII	CATG	8 cut(s)	59, 70, 183, 242, 253, 409, 413, 475
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	3 cut(s)	5, 126, 526
DpnII	GATC	3 cut(s)	3, 124, 524
EaeI	YGGCCR	2 cut(s)	55, 238
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Ecl136II	GAGCTC	1 cut(s)	516
Eco130I	CCWWGG	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	518
Eco31I	GGTCTC	1 cut(s)	458
Eco47I	GGWCC	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	516
Eco57I	CTGAAG	3 cut(s)	251, 470, 489
Eco88I	CYCGRG	1 cut(s)	455
Eco91I	GGTNACC	1 cut(s)	208
EcoICRI	GAGCTC	1 cut(s)	516
EcoNI	CCTNNNNNAGG	1 cut(s)	25
EcoO65I	GGTNACC	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	58
EcoT22I	ATGCAT	1 cut(s)	414
EcoT38I	GRGCYC	1 cut(s)	518
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	8 cut(s)	62, 73, 186, 245, 256, 412, 416, 478
FatI	CATG	8 cut(s)	58, 69, 182, 241, 252, 408, 412, 474
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	7 cut(s)	115, 143, 228, 238, 302, 319, 342
FokI	GGATG	4 cut(s)	86, 102, 179, 269
FriOI	GRGCYC	1 cut(s)	518
Fsp4HI	GCNGC	7 cut(s)	115, 143, 228, 238, 302, 319, 342
GluI	GCNGC	7 cut(s)	115, 143, 228, 238, 302, 319, 342
GsaI	CCCAGC	1 cut(s)	308
HaeIII	GGCC	2 cut(s)	57, 240
HapII	CCGG	2 cut(s)	51, 401
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	8 cut(s)	62, 73, 186, 245, 256, 412, 416, 478
HincII	GTYRAC	2 cut(s)	247, 406
HindII	GTYRAC	2 cut(s)	247, 406
HinfI	GANTC	2 cut(s)	94, 325
HpaII	CCGG	2 cut(s)	51, 401
HphI	GGTGA	3 cut(s)	148, 202, 212
Hpy166II	GTNNAC	3 cut(s)	161, 247, 406
Hpy188I	TCNGA	2 cut(s)	8, 529
Hpy188III	TCNNGA	3 cut(s)	149, 201, 455
Hpy8I	GTNNAC	3 cut(s)	161, 247, 406
HpyCH4IV	ACGT	2 cut(s)	105, 249
HpyCH4V	TGCA	1 cut(s)	412
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 315
HpyF3I	CTNAG	1 cut(s)	297
HpySE526I	ACGT	2 cut(s)	105, 249
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	8 cut(s)	62, 73, 186, 245, 256, 412, 416, 478
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 124, 524
LmnI	GCTCC	1 cut(s)	62
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	1 cut(s)	277
MaeII	ACGT	2 cut(s)	105, 249
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	3 cut(s)	5, 126, 526
MboI	GATC	3 cut(s)	3, 124, 524
MboII	GAAGA	2 cut(s)	209, 495
MflI	RGATCY	1 cut(s)	524
MhlI	GDGCHC	1 cut(s)	518
MlsI	TGGCCA	1 cut(s)	57
MluNI	TGGCCA	1 cut(s)	57
MlyI	GAGTC	2 cut(s)	88, 319
Mox20I	TGGCCA	1 cut(s)	57
Mph1103I	ATGCAT	1 cut(s)	414
MscI	TGGCCA	1 cut(s)	57
Msp20I	TGGCCA	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	304
MspI	CCGG	2 cut(s)	51, 401
MspR9I	CCNGG	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	2 cut(s)	120, 315
NcoI	CCATGG	1 cut(s)	58
NdeII	GATC	3 cut(s)	3, 124, 524
NlaIII	CATG	8 cut(s)	62, 73, 186, 245, 256, 412, 416, 478
NlaIV	GGNNCC	2 cut(s)	64, 526
NmuCI	GTSAC	1 cut(s)	208
NsiI	ATGCAT	1 cut(s)	414
NspI	RCATGY	2 cut(s)	186, 412
PaeR7I	CTCGAG	1 cut(s)	455
PkrI	GCNGC	7 cut(s)	116, 144, 229, 239, 303, 320, 343
PleI	GAGTC	2 cut(s)	88, 319
PpsI	GAGTC	2 cut(s)	88, 319
Psp124BI	GAGCTC	1 cut(s)	518
Psp6I	CCWGG	1 cut(s)	153
PspEI	GGTNACC	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	2 cut(s)	64, 526
PspPI	GGNCC	1 cut(s)	48
PsuI	RGATCY	1 cut(s)	524
PvuII	CAGCTG	1 cut(s)	304
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
SacI	GAGCTC	1 cut(s)	518
SatI	GCNGC	7 cut(s)	115, 143, 228, 238, 302, 319, 342
Sau3AI	GATC	3 cut(s)	3, 124, 524
Sau96I	GGNCC	1 cut(s)	48
SchI	GAGTC	2 cut(s)	88, 319
ScrFI	CCNGG	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	518
SfaNI	GCATC	1 cut(s)	277
Sfr274I	CTCGAG	1 cut(s)	455
SinI	GGWCC	1 cut(s)	48
SlaI	CTCGAG	1 cut(s)	455
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
SstI	GAGCTC	1 cut(s)	518
StyD4I	CCNGG	1 cut(s)	153
StyI	CCWWGG	1 cut(s)	58
TaiI	ACGT	2 cut(s)	108, 252
TaqI	TCGA	2 cut(s)	150, 456
TaqII	GACCGA	1 cut(s)	440
TatI	WGTACW	1 cut(s)	160
TauI	GCSGC	6 cut(s)	117, 145, 230, 240, 321, 344
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	1 cut(s)	301
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	2 cut(s)	383, 491
VpaK11BI	GGWCC	1 cut(s)	48
XagI	CCTNNNNNAGG	1 cut(s)	25
XceI	RCATGY	2 cut(s)	186, 412
XhoI	CTCGAG	1 cut(s)	455
ZraI	GACGTC	1 cut(s)	250
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.