Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006250

Physical Location & Seq

Genomic Coordinates Reverse (-)

5818548 .. 5820975

Gene Structure 2428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G17660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCTTCTCTATGTCAAGCTTGCTCTTCGTCTTCAGCTACACCATTGCTCCTGGCGAAAAGGGTGTTCTCCTTAGCATCATCTCCGTTTATCTTCATGAGGGAACACAAAATCCCTCGCCATTGTAACAGCTTTAGAGCATTTAATGCCGTTTCTGCGTCTTCGTCAGCGTCTACCTCAGTTTGTGTCGATTTTAAGGATCTGAGAAGCAATGAATTGGTGGAATTGGAGTATGCAGAACTTAACCTCAATCATAAGATATCTGAAGAAGTGGGTCATGTAAGAATCAGACAGCATGTTAATCCTCTCAGTTCCTCTTTCTCTAAACCAGCTCCAGTTCCTGTTTGGGATGAAGTTTATAAGGATCCATCACTTCCTCTTATGGTGGATATTGGAAGTGGTAGTGGCAGATTTCTCCTATGGCAAGCCAATAAGAATGTTGAATCAAGAAATTACTTGGGGCTGGAAATACGTCAGAAACTGGTCAAGCGCGCCAACTTTTGGGTGAATGAGCTCGGACTTTCAAACGTACACTTCATATTTGCAAACGCCATGGTTTCTTTTGAACATCTTATATCGAGCTATCCTGGACCATTGGAGATTGTCTCAATCTTGTGTCCGGATCCTCATTTCAAGAAACGTCATCAAAAGAGACGTGTTGTTCAAAAGCCTTTGGTGAATTCCATTCTTCAAAACCTAAAACCCGGTGGAAAAATATTTGTGCAATCCGATGTGCTGGATGTGGCTCAAGACATGAGAGATCAGTTGGACGAGGAATCAAATGTTCTTCAACACATGGACACAGTTGACACAGAGGATGGGTGGTTAACGGAAAACCCGATGGGTATAAGAACAGAACGAGAGATCCACGCAGAGTTCGAAGGTGCAAGAATCTACAGAAGACTTTACCAGAAACGTCAGCTATTACCAGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_4

Protein Analysis

312

Amino Acids

35.49

Weight (kDa)

7.72

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_4	PF02390	126 - 300	4.6e-37	Putative methyltransferase
Methyltransf_31	PF13847	128 - 265	3e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006250)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17660
fragaria_vesca	FvH4_7g08330
malus_domestica	MD02G1232000.v1.1
prunus_persica	Prupe.2G106600_v2.0.a1 Prupe.2G106600_v2.0.a1
pyrus_communis	pycom02g20030
rosa_chinensis	RchiOBHm_Chr1g0340401 RchiOBHm_Chr1g0340511 RchiOBHm_Chr1g0340671 RchiOBHm_Chr1g0340701
rosa_laevigata	RLG00000029036
rosa_multiflora	Rmu_sc0000566.1_g000055 Rmu_sc0009976.1_g000002
rosa_roxburghii	Rroxscaffold_4G00311200 Rroxscaffold_4G00311260 Rroxscaffold_4G00315920
rosa_rugosa	Rorug01G0162900.1 Rorug01G0164000.1
rosa_samantha	Rh1AG177700 Rh1BG145200 Rh1BG146600 Rh1CG164900 Rh1DG178700
rosa_wichuraiana	Rw1G014620 Rw1G014790 Rw1G014840 Rw1G014880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	360
AccB7I	CCANNNNNTGG	1 cut(s)	501
AccI	GTMKAC	1 cut(s)	173
AccII	CGCG	1 cut(s)	492
AccIII	TCCGGA	1 cut(s)	619
AclWI	GGATC	6 cut(s)	207, 359, 372, 617, 630, 859
AcsI	RAATTY	1 cut(s)	679
AcuI	CTGAAG	2 cut(s)	18, 285
AfaI	GTAC	1 cut(s)	531
AfiI	CCNNNNNNNGG	1 cut(s)	501
AflIII	ACRYGT	1 cut(s)	655
AgsI	TTSAA	7 cut(s)	443, 525, 566, 634, 665, 692, 791
AjiI	CACGTC	1 cut(s)	656
AjnI	CCWGG	2 cut(s)	51, 586
AloI	GAACNNNNNNTCC	4 cut(s)	96, 128, 849, 881
AluBI	AGCT	7 cut(s)	20, 38, 132, 332, 514, 582, 922
AluI	AGCT	7 cut(s)	20, 38, 132, 332, 514, 582, 922
Alw21I	GWGCWC	1 cut(s)	516
Alw26I	GTCTC	2 cut(s)	610, 646
AlwI	GGATC	6 cut(s)	207, 359, 372, 617, 630, 859
AlwNI	CAGNNNCTG	2 cut(s)	341, 481
Aor13HI	TCCGGA	1 cut(s)	619
ApoI	RAATTY	1 cut(s)	679
AspLEI	GCGC	2 cut(s)	492, 494
AspS9I	GGNCC	1 cut(s)	590
AsuC2I	CCSGG	1 cut(s)	705
AsuHPI	GGTGA	2 cut(s)	517, 688
AsuII	TTCGAA	1 cut(s)	879
AvaII	GGWCC	1 cut(s)	590
BamHI	GGATCC	2 cut(s)	364, 622
BanII	GRGCYC	1 cut(s)	516
BbsI	GAAGAC	3 cut(s)	24, 153, 907
Bbv12I	GWGCWC	1 cut(s)	516
BccI	CCATC	3 cut(s)	376, 812, 835
BceAI	ACGGC	1 cut(s)	134
BciT130I	CCWGG	2 cut(s)	53, 588
BcnI	CCSGG	1 cut(s)	705
BcoDI	GTCTC	2 cut(s)	610, 646
BfmI	CTRYAG	1 cut(s)	895
Bme1390I	CCNGG	3 cut(s)	53, 588, 705
Bme18I	GGWCC	1 cut(s)	590
BmgBI	CACGTC	1 cut(s)	656
BmgT120I	GGNCC	1 cut(s)	590
BmiI	GGNNCC	2 cut(s)	366, 624
BmrFI	CCNGG	3 cut(s)	53, 588, 705
BmsI	GCATC	1 cut(s)	86
BpiI	GAAGAC	3 cut(s)	24, 153, 907
BplI	GAGNNNNNCTC	2 cut(s)	590, 622
BpmI	CTGGAG	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	73
Bpu14I	TTCGAA	1 cut(s)	879
BpuEI	CTTGAG	1 cut(s)	732
BpuMI	CCSGG	1 cut(s)	705
BsaJI	CCNNGG	1 cut(s)	552
BsaWI	WCCGGW	1 cut(s)	619
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	1 cut(s)	501
Bse1I	ACTGG	2 cut(s)	335, 486
Bse3DI	GCAATG	2 cut(s)	44, 217
BseAI	TCCGGA	1 cut(s)	619
BseBI	CCWGG	2 cut(s)	53, 588
BseDI	CCNNGG	1 cut(s)	552
BseGI	GGATG	3 cut(s)	355, 745, 823
BseLI	CCNNNNNNNGG	1 cut(s)	501
BseMI	GCAATG	2 cut(s)	44, 217
BseMII	CTCAG	3 cut(s)	192, 194, 322
BseNI	ACTGG	2 cut(s)	335, 486
BsePI	GCGCGC	1 cut(s)	490
Bsh1236I	CGCG	1 cut(s)	492
BsiHKAI	GWGCWC	1 cut(s)	516
BsiSI	CCGG	2 cut(s)	620, 705
BslI	CCNNNNNNNGG	1 cut(s)	501
BsmAI	GTCTC	2 cut(s)	610, 646
BsmBI	CGTCTC	1 cut(s)	646
Bsp119I	TTCGAA	1 cut(s)	879
Bsp1286I	GDGCHC	1 cut(s)	516
Bsp13I	TCCGGA	1 cut(s)	619
Bsp143I	GATC	5 cut(s)	199, 364, 622, 760, 864
Bsp19I	CCATGG	1 cut(s)	552
BspCNI	CTCAG	3 cut(s)	191, 195, 321
BspEI	TCCGGA	1 cut(s)	619
BspFNI	CGCG	1 cut(s)	492
BspHI	TCATGA	1 cut(s)	96
BspLI	GGNNCC	2 cut(s)	366, 624
BspPI	GGATC	6 cut(s)	207, 359, 372, 617, 630, 859
BspQI	GCTCTTC	1 cut(s)	31
BspT104I	TTCGAA	1 cut(s)	879
BsrDI	GCAATG	2 cut(s)	44, 217
BsrI	ACTGG	2 cut(s)	335, 486
BssECI	CCNNGG	1 cut(s)	552
BssHII	GCGCGC	1 cut(s)	490
BssMI	GATC	5 cut(s)	199, 364, 622, 760, 864
BssT1I	CCWWGG	1 cut(s)	552
Bst2UI	CCWGG	2 cut(s)	53, 588
Bst4CI	ACNGT	1 cut(s)	805
Bst6I	CTCTTC	1 cut(s)	31
BstAPI	GCANNNNNTGC	1 cut(s)	146
BstBI	TTCGAA	1 cut(s)	879
BstC8I	GCNNGC	3 cut(s)	22, 426, 492
BstDEI	CTNAG	4 cut(s)	73, 178, 203, 308
BstDSI	CCRYGG	1 cut(s)	552
BstF5I	GGATG	3 cut(s)	355, 745, 823
BstFNI	CGCG	1 cut(s)	492
BstHHI	GCGC	2 cut(s)	492, 494
BstKTI	GATC	5 cut(s)	202, 367, 625, 763, 867
BstMAI	GTCTC	2 cut(s)	610, 646
BstMBI	GATC	5 cut(s)	199, 364, 622, 760, 864
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 155
BstNI	CCWGG	2 cut(s)	53, 588
BstNSI	RCATGY	1 cut(s)	299
BstSCI	CCNGG	3 cut(s)	51, 586, 703
BstSFI	CTRYAG	1 cut(s)	895
BstUI	CGCG	1 cut(s)	492
BstV2I	GAAGAC	3 cut(s)	24, 153, 907
BstX2I	RGATCY	4 cut(s)	199, 364, 622, 864
BstYI	RGATCY	4 cut(s)	199, 364, 622, 864
BtgI	CCRYGG	1 cut(s)	552
BtrI	CACGTC	1 cut(s)	656
BtsCI	GGATG	3 cut(s)	355, 745, 823
Cac8I	GCNNGC	3 cut(s)	22, 426, 492
CaiI	CAGNNNCTG	2 cut(s)	341, 481
CciI	TCATGA	1 cut(s)	96
CfoI	GCGC	2 cut(s)	492, 494
Cfr13I	GGNCC	1 cut(s)	590
CseI	GACGC	2 cut(s)	147, 159
Csp6I	GTAC	1 cut(s)	530
CviAII	CATG	7 cut(s)	97, 278, 296, 553, 754, 796, 936
CviQI	GTAC	1 cut(s)	530
DdeI	CTNAG	4 cut(s)	73, 178, 203, 308
DpnI	GATC	5 cut(s)	201, 366, 624, 762, 866
DpnII	GATC	5 cut(s)	199, 364, 622, 760, 864
Eam1104I	CTCTTC	1 cut(s)	31
EarI	CTCTTC	1 cut(s)	31
Ecl136II	GAGCTC	1 cut(s)	514
Eco130I	CCWWGG	1 cut(s)	552
Eco24I	GRGCYC	1 cut(s)	516
Eco32I	GATATC	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	590
Eco53kI	GAGCTC	1 cut(s)	514
Eco57I	CTGAAG	2 cut(s)	18, 285
EcoICRI	GAGCTC	1 cut(s)	514
EcoRI	GAATTC	1 cut(s)	679
EcoRII	CCWGG	2 cut(s)	51, 586
EcoRV	GATATC	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	552
EcoT38I	GRGCYC	1 cut(s)	516
ErhI	CCWWGG	1 cut(s)	552
Esp3I	CGTCTC	1 cut(s)	646
FaeI	CATG	7 cut(s)	100, 281, 299, 556, 757, 799, 939
FatI	CATG	7 cut(s)	96, 277, 295, 552, 753, 795, 935
FblI	GTMKAC	1 cut(s)	173
FokI	GGATG	3 cut(s)	362, 752, 830
FriOI	GRGCYC	1 cut(s)	516
GlaI	GCGC	2 cut(s)	491, 493
GsuI	CTGGAG	1 cut(s)	318
HapII	CCGG	2 cut(s)	620, 705
HgaI	GACGC	2 cut(s)	147, 159
HhaI	GCGC	2 cut(s)	492, 494
Hin1II	CATG	7 cut(s)	100, 281, 299, 556, 757, 799, 939
Hin6I	GCGC	2 cut(s)	490, 492
HinP1I	GCGC	2 cut(s)	490, 492
HincII	GTYRAC	2 cut(s)	808, 828
HindII	GTYRAC	2 cut(s)	808, 828
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	4 cut(s)	285, 443, 776, 891
HpaI	GTTAAC	1 cut(s)	828
HpaII	CCGG	2 cut(s)	620, 705
HphI	GGTGA	2 cut(s)	517, 688
Hpy166II	GTNNAC	4 cut(s)	174, 532, 808, 828
Hpy188I	TCNGA	6 cut(s)	204, 265, 290, 477, 518, 730
Hpy188III	TCNNGA	5 cut(s)	97, 447, 620, 634, 749
Hpy8I	GTNNAC	4 cut(s)	174, 532, 808, 828
HpyAV	CCTTC	1 cut(s)	875
HpyCH4III	ACNGT	1 cut(s)	805
HpyCH4IV	ACGT	5 cut(s)	472, 528, 640, 655, 916
HpyCH4V	TGCA	4 cut(s)	236, 545, 724, 887
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 155
HpyF3I	CTNAG	4 cut(s)	73, 178, 203, 308
HpySE526I	ACGT	5 cut(s)	472, 528, 640, 655, 916
Hsp92II	CATG	7 cut(s)	100, 281, 299, 556, 757, 799, 939
HspAI	GCGC	2 cut(s)	490, 492
Kpn2I	TCCGGA	1 cut(s)	619
KspAI	GTTAAC	1 cut(s)	828
Kzo9I	GATC	5 cut(s)	199, 364, 622, 760, 864
LguI	GCTCTTC	1 cut(s)	31
LmnI	GCTCC	2 cut(s)	54, 337
LweI	GCATC	1 cut(s)	86
MaeII	ACGT	5 cut(s)	472, 528, 640, 655, 916
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	5 cut(s)	201, 366, 624, 762, 866
MboI	GATC	5 cut(s)	199, 364, 622, 760, 864
MboII	GAAGA	8 cut(s)	18, 24, 85, 153, 278, 680, 779, 912
MflI	RGATCY	4 cut(s)	199, 364, 622, 864
MhlI	GDGCHC	1 cut(s)	516
MluCI	AATT	4 cut(s)	215, 224, 451, 679
MmeI	TCCRAC	1 cut(s)	747
MroI	TCCGGA	1 cut(s)	619
MseI	TTAA	5 cut(s)	144, 195, 243, 300, 827
MspI	CCGG	2 cut(s)	620, 705
MspR9I	CCNGG	3 cut(s)	53, 588, 705
MvaI	CCWGG	2 cut(s)	53, 588
MvnI	CGCG	1 cut(s)	492
MwoI	GCNNNNNNNGC	2 cut(s)	146, 155
NciI	CCSGG	1 cut(s)	705
NcoI	CCATGG	1 cut(s)	552
NdeII	GATC	5 cut(s)	199, 364, 622, 760, 864
NlaIII	CATG	7 cut(s)	100, 281, 299, 556, 757, 799, 939
NlaIV	GGNNCC	2 cut(s)	366, 624
NspI	RCATGY	1 cut(s)	299
NspV	TTCGAA	1 cut(s)	879
PagI	TCATGA	1 cut(s)	96
PauI	GCGCGC	1 cut(s)	490
PciSI	GCTCTTC	1 cut(s)	31
PcsI	WCGNNNNNNNCGW	2 cut(s)	836, 876
PfeI	GAWTC	4 cut(s)	285, 443, 776, 891
PflMI	CCANNNNNTGG	1 cut(s)	501
PfoI	TCCNGGA	1 cut(s)	586
PsiI	TTATAA	1 cut(s)	360
Psp124BI	GAGCTC	1 cut(s)	516
Psp6I	CCWGG	2 cut(s)	51, 586
PspGI	CCWGG	2 cut(s)	51, 586
PspN4I	GGNNCC	2 cut(s)	366, 624
PspPI	GGNCC	1 cut(s)	590
PstNI	CAGNNNCTG	2 cut(s)	341, 481
PsuI	RGATCY	4 cut(s)	199, 364, 622, 864
PteI	GCGCGC	1 cut(s)	490
RsaI	GTAC	1 cut(s)	531
RsaNI	GTAC	1 cut(s)	530
SacI	GAGCTC	1 cut(s)	516
SapI	GCTCTTC	1 cut(s)	31
SaqAI	TTAA	5 cut(s)	144, 195, 243, 300, 827
Sau3AI	GATC	5 cut(s)	199, 364, 622, 760, 864
Sau96I	GGNCC	1 cut(s)	590
ScrFI	CCNGG	3 cut(s)	53, 588, 705
SduI	GDGCHC	1 cut(s)	516
SfaNI	GCATC	1 cut(s)	86
SfcI	CTRYAG	1 cut(s)	895
SfuI	TTCGAA	1 cut(s)	879
SinI	GGWCC	1 cut(s)	590
SmlI	CTYRAG	1 cut(s)	747
SmoI	CTYRAG	1 cut(s)	747
Sse9I	AATT	4 cut(s)	215, 224, 451, 679
SspI	AATATT	1 cut(s)	717
SstI	GAGCTC	1 cut(s)	516
StyD4I	CCNGG	3 cut(s)	51, 586, 703
StyI	CCWWGG	1 cut(s)	552
TaaI	ACNGT	1 cut(s)	805
TaiI	ACGT	5 cut(s)	475, 531, 643, 658, 919
TaqI	TCGA	3 cut(s)	189, 578, 879
TasI	AATT	4 cut(s)	215, 224, 451, 679
TfiI	GAWTC	4 cut(s)	285, 443, 776, 891
Tru1I	TTAA	5 cut(s)	144, 195, 243, 300, 827
Tru9I	TTAA	5 cut(s)	144, 195, 243, 300, 827
TspDTI	ATGAA	4 cut(s)	85, 228, 366, 526
TspGWI	ACGGA	2 cut(s)	75, 845
Van91I	CCANNNNNTGG	1 cut(s)	501
VpaK11BI	GGWCC	1 cut(s)	590
XapI	RAATTY	1 cut(s)	679
XceI	RCATGY	1 cut(s)	299
XcmI	CCANNNNNNNNNTGG	1 cut(s)	342
XmiI	GTMKAC	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.